Wall clock time and date at job start Mon Mar 30 2020 02:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46624 * 2 1 4 4 C 1.50700 * 109.46986 * 119.99942 * 2 1 3 5 5 H 1.07999 * 119.99988 * 120.00054 * 4 2 1 6 6 C 1.37885 * 120.00047 * 300.00234 * 4 2 1 7 7 N 1.31518 * 119.99792 * 359.72305 * 6 4 2 8 8 Si 1.86795 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47021 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47081 * 119.99727 * 8 6 4 11 11 H 1.48501 * 109.47213 * 240.00099 * 8 6 4 12 12 N 1.46497 * 109.47133 * 239.99872 * 2 1 3 13 13 C 1.39678 * 119.99559 * 85.00203 * 12 2 1 14 14 C 1.38922 * 120.07909 * 359.97438 * 13 12 2 15 15 C 1.38085 * 119.92767 * 179.97438 * 14 13 12 16 16 C 1.38307 * 120.07495 * 359.97438 * 15 14 13 17 17 C 1.38268 * 120.14785 * 0.02562 * 16 15 14 18 18 C 1.50696 * 119.96244 * 179.97438 * 17 16 15 19 19 O 1.42902 * 109.46972 * 89.99836 * 18 17 16 20 20 C 1.38127 * 120.07083 * 359.74674 * 17 16 15 21 21 H 1.08998 * 109.47453 * 300.00026 * 1 2 3 22 22 H 1.08996 * 109.47248 * 60.00351 * 1 2 3 23 23 H 1.09005 * 109.46932 * 180.02562 * 1 2 3 24 24 H 0.97000 * 119.99468 * 179.97438 * 7 6 4 25 25 H 0.97000 * 120.00203 * 264.99839 * 12 2 1 26 26 H 1.08007 * 120.03847 * 359.97438 * 14 13 12 27 27 H 1.08002 * 119.95990 * 179.97438 * 15 14 13 28 28 H 1.07991 * 119.92522 * 180.02562 * 16 15 14 29 29 H 1.09002 * 109.46970 * 210.00030 * 18 17 16 30 30 H 1.08998 * 109.46919 * 329.99801 * 18 17 16 31 31 H 0.96702 * 113.99676 * 180.02562 * 19 18 17 32 32 H 1.08004 * 120.03373 * 180.27772 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9475 0.8331 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.1474 -2.2863 3.6038 10 1 3.1471 -0.1857 4.8161 11 1 1.1677 -1.5866 4.8165 12 7 2.0184 -0.6906 -1.1961 13 6 2.1518 0.0063 -2.3993 14 6 1.8213 1.3541 -2.4636 15 6 1.9549 2.0401 -3.6545 16 6 2.4176 1.3870 -4.7824 17 6 2.7474 0.0456 -4.7220 18 6 3.2505 -0.6620 -5.9536 19 8 4.6747 -0.5598 -6.0133 20 6 2.6205 -0.6454 -3.5327 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7129 1.1642 3.4844 25 1 2.2491 -1.6318 -1.1526 26 1 1.4604 1.8649 -1.5830 27 1 1.6978 3.0878 -3.7051 28 1 2.5215 1.9260 -5.7124 29 1 2.9631 -1.7126 -5.9120 30 1 2.8157 -0.2012 -6.8405 31 1 5.0682 -0.9936 -6.7828 32 1 2.8826 -1.6921 -3.4850 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306205009.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:32 Heat of formation + Delta-G solvation = -51.340140 kcal Electronic energy + Delta-G solvation = -14509.507750 eV Core-core repulsion = 12047.646704 eV Total energy + Delta-G solvation = -2461.861047 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.42992 -37.98661 -36.86528 -34.62245 -32.31799 -31.71292 -28.82221 -27.32646 -26.73631 -23.21283 -23.16850 -20.96947 -18.99806 -18.29134 -17.61221 -17.10300 -16.71372 -16.10372 -15.38180 -15.19510 -14.52737 -14.32103 -14.27998 -14.15822 -13.59391 -13.05281 -12.94144 -12.80883 -12.75704 -12.28073 -12.24266 -12.05333 -11.60259 -11.11268 -10.90506 -10.84484 -10.50192 -9.70139 -8.23443 -8.06731 -6.35849 0.51312 0.84477 1.40241 1.41868 1.53350 2.35983 2.90555 2.98179 3.10357 3.72155 4.07124 4.18505 4.34212 4.46911 4.61418 4.63293 4.70058 4.76965 4.93767 5.02577 5.10373 5.19156 5.41400 5.55622 5.60445 5.72748 5.79180 5.84789 6.07765 6.18060 6.54564 6.84060 7.00197 7.20144 7.37056 8.85352 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046683 B = 0.006092 C = 0.005666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.642683 B = 4595.346077 C = 4940.724311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.276 3.724 3 H 0.008 0.992 4 C -0.548 4.548 5 H 0.060 0.940 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.968 3.032 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.277 1.277 12 N -0.733 5.733 13 C 0.208 3.792 14 C -0.221 4.221 15 C -0.076 4.076 16 C -0.180 4.180 17 C -0.057 4.057 18 C 0.122 3.878 19 O -0.589 6.589 20 C -0.202 4.202 21 H 0.066 0.934 22 H 0.023 0.977 23 H 0.029 0.971 24 H 0.266 0.734 25 H 0.393 0.607 26 H 0.102 0.898 27 H 0.139 0.861 28 H 0.140 0.860 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.398 0.602 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.481 -2.243 -14.735 15.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.172 3.828 3 H 0.026 0.974 4 C -0.587 4.587 5 H 0.078 0.922 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.793 3.207 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.202 1.202 12 N -0.358 5.358 13 C 0.102 3.898 14 C -0.245 4.245 15 C -0.095 4.095 16 C -0.200 4.200 17 C -0.058 4.058 18 C 0.045 3.955 19 O -0.398 6.398 20 C -0.225 4.225 21 H 0.085 0.915 22 H 0.042 0.958 23 H 0.048 0.952 24 H 0.075 0.925 25 H 0.227 0.773 26 H 0.120 0.880 27 H 0.156 0.844 28 H 0.158 0.842 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.248 0.752 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.230 -1.695 -13.854 14.134 hybrid contribution 0.210 -0.852 0.800 1.187 sum 2.440 -2.548 -13.054 13.522 Atomic orbital electron populations 1.21983 0.98641 0.99173 0.99834 1.18351 0.90725 0.91951 0.81754 0.97419 1.21570 1.32272 1.13385 0.91431 0.92212 1.25695 0.94904 0.95643 1.01948 1.70011 1.37135 1.23536 1.24551 0.85365 0.78158 0.78479 0.78741 1.19230 1.20579 1.20211 1.45244 1.71043 1.12116 1.07355 1.18259 0.92783 0.92016 0.86788 1.20868 1.10313 0.93868 0.99416 1.21099 0.96658 1.00038 0.91655 1.20947 1.05666 0.94162 0.99215 1.19684 0.97329 0.94423 0.94383 1.21009 0.81080 0.99010 0.94384 1.86548 1.20258 1.81003 1.52032 1.20574 1.09319 1.00592 0.91990 0.91482 0.95813 0.95214 0.92464 0.77317 0.87963 0.84355 0.84240 0.91682 0.90429 0.75151 0.85877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.83 9.20 71.98 0.66 -6.16 16 2 C 0.28 14.20 2.25 44.25 0.10 14.30 16 3 H 0.01 0.46 6.49 -2.39 -0.02 0.44 16 4 C -0.55 -29.93 8.73 25.60 0.22 -29.71 16 5 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 6 C 0.02 0.99 5.30 84.66 0.45 1.44 16 7 N -0.91 -51.71 11.33 21.45 0.24 -51.46 16 8 Si 0.97 42.88 29.54 68.60 2.03 44.90 16 9 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 12 N -0.73 -32.52 5.24 -322.52 -1.69 -34.21 16 13 C 0.21 8.51 6.64 38.21 0.25 8.76 16 14 C -0.22 -8.93 8.85 22.40 0.20 -8.73 16 15 C -0.08 -2.49 10.04 22.25 0.22 -2.27 16 16 C -0.18 -5.28 9.70 22.29 0.22 -5.07 16 17 C -0.06 -1.73 5.51 -19.88 -0.11 -1.84 16 18 C 0.12 2.62 7.17 71.23 0.51 3.13 16 19 O -0.59 -13.25 13.64 -148.98 -2.03 -15.28 16 20 C -0.20 -7.03 9.55 22.40 0.21 -6.81 16 21 H 0.07 3.62 6.08 -2.39 -0.01 3.61 16 22 H 0.02 1.08 7.71 -2.39 -0.02 1.06 16 23 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 24 H 0.27 14.20 8.31 -92.71 -0.77 13.42 16 25 H 0.39 16.25 8.55 -92.71 -0.79 15.46 16 26 H 0.10 4.54 6.12 -2.91 -0.02 4.52 16 27 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 28 H 0.14 3.21 8.06 -2.92 -0.02 3.19 16 29 H 0.07 1.20 8.09 -2.39 -0.02 1.18 16 30 H 0.08 1.25 8.08 -2.39 -0.02 1.23 16 31 H 0.40 4.31 9.12 -74.06 -0.68 3.64 16 32 H 0.12 3.90 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -63.86 272.59 1.15 -62.70 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: -0.33 Total: 26.31 kcal Atomic # 6 Polarization: -35.91 SS G_CDS: 2.94 Total: -32.96 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -1.45 Total: -85.67 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -2.03 Total: -15.28 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -63.86 1.15 -62.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306205009.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.363 kcal (2) G-P(sol) polarization free energy of solvation -63.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds