Wall clock time and date at job start Mon Mar 30 2020 02:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47616 * 2 1 4 4 C 1.52995 * 109.47337 * 120.00315 * 2 1 3 5 5 O 1.42903 * 109.47359 * 54.99678 * 4 2 1 6 6 N 1.46508 * 109.47011 * 240.00369 * 2 1 3 7 7 C 1.39674 * 120.00145 * 85.00055 * 6 2 1 8 8 C 1.39335 * 119.95662 * 359.97438 * 7 6 2 9 9 C 1.38475 * 120.43124 * 179.97438 * 8 7 6 10 10 C 1.37687 * 120.32304 * 359.97438 * 9 8 7 11 11 C 1.40758 * 119.89364 * 0.02562 * 10 9 8 12 12 C 1.41400 * 120.20684 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99904 * 24.32972 * 12 11 10 14 14 C 1.39938 * 119.99811 * 204.32744 * 12 11 10 15 15 N 1.30823 * 119.99673 * 17.74242 * 14 12 11 16 16 Si 1.86802 * 119.99892 * 197.74324 * 14 12 11 17 17 H 1.48501 * 109.47202 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46811 * 119.99960 * 16 14 12 19 19 H 1.48493 * 109.47017 * 240.00163 * 16 14 12 20 20 C 1.38279 * 119.95303 * 179.72859 * 7 6 2 21 21 H 1.08999 * 109.47231 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46986 * 299.99771 * 1 2 3 23 23 H 1.09001 * 109.47314 * 59.99654 * 1 2 3 24 24 H 1.09007 * 109.47513 * 174.99938 * 4 2 1 25 25 H 1.08997 * 109.47402 * 294.99824 * 4 2 1 26 26 H 0.96700 * 114.00446 * 179.97438 * 5 4 2 27 27 H 0.97006 * 119.99635 * 264.72127 * 6 2 1 28 28 H 1.08001 * 119.78361 * 359.97438 * 8 7 6 29 29 H 1.07996 * 119.84179 * 179.97438 * 9 8 7 30 30 H 1.08002 * 120.05553 * 179.97438 * 10 9 8 31 31 H 0.97005 * 119.99267 * 179.97438 * 15 14 12 32 32 H 1.08005 * 120.16231 * 359.97132 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 8 1.4702 -2.0304 1.3094 6 7 2.0183 -0.6906 -1.1963 7 6 2.1517 0.0063 -2.3994 8 6 1.8196 1.3580 -2.4610 9 6 1.9485 2.0586 -3.6485 10 6 2.4074 1.4262 -4.7823 11 6 2.7468 0.0610 -4.7355 12 6 3.2181 -0.5951 -5.8960 13 1 3.6875 -0.0262 -6.6849 14 6 3.0764 -1.9816 -6.0222 15 7 2.2242 -2.6235 -5.2651 16 14 4.1040 -2.9156 -7.2716 17 1 4.9852 -1.9656 -7.9972 18 1 4.9368 -3.9261 -6.5713 19 1 3.2075 -3.5975 -8.2392 20 6 2.6180 -0.6451 -3.5265 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 3.1264 -0.7995 1.2055 25 1 1.7517 -0.1584 2.1369 26 1 1.7505 -2.5465 2.0776 27 1 2.2528 -1.6308 -1.1517 28 1 1.4592 1.8628 -1.5768 29 1 1.6880 3.1060 -3.6856 30 1 2.5059 1.9767 -5.7063 31 1 2.1258 -3.5845 -5.3529 32 1 2.8800 -1.6918 -3.4790 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306335534.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:12 Heat of formation + Delta-G solvation = -57.977950 kcal Electronic energy + Delta-G solvation = -14745.282025 eV Core-core repulsion = 12283.133142 eV Total energy + Delta-G solvation = -2462.148884 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.88449 -38.33652 -36.28794 -35.10376 -32.31105 -31.34128 -28.66046 -27.30310 -26.97492 -23.16255 -22.32906 -21.11376 -19.14496 -18.38512 -17.58157 -16.68228 -16.49738 -16.26650 -15.33944 -14.90698 -14.79667 -14.33056 -13.98632 -13.86952 -13.55723 -13.22706 -12.88150 -12.76436 -12.54060 -12.37923 -12.01543 -11.83978 -11.46556 -11.27735 -11.08482 -10.90111 -10.48741 -9.24145 -8.61353 -7.87577 -6.31570 1.08520 1.34915 1.37979 1.53262 1.57928 2.23187 2.78345 2.85852 3.46931 3.87684 3.99090 4.23047 4.41632 4.55491 4.59877 4.74039 4.80377 4.90449 5.02741 5.04158 5.20552 5.33092 5.41816 5.50765 5.62268 5.98167 6.12481 6.22832 6.29645 6.59672 6.93989 6.96528 7.07296 7.10321 7.27377 8.39105 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.031407 B = 0.007824 C = 0.006581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.302375 B = 3577.773878 C = 4253.605322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.146 3.854 3 H 0.088 0.912 4 C 0.076 3.924 5 O -0.588 6.588 6 N -0.747 5.747 7 C 0.221 3.779 8 C -0.302 4.302 9 C -0.062 4.062 10 C -0.287 4.287 11 C 0.107 3.893 12 C -0.504 4.504 13 H 0.072 0.928 14 C 0.035 3.965 15 N -0.823 5.823 16 Si 0.981 3.019 17 H -0.258 1.258 18 H -0.265 1.265 19 H -0.266 1.266 20 C -0.263 4.263 21 H 0.046 0.954 22 H 0.081 0.919 23 H 0.036 0.964 24 H 0.052 0.948 25 H 0.086 0.914 26 H 0.396 0.604 27 H 0.391 0.609 28 H 0.116 0.884 29 H 0.120 0.880 30 H 0.090 0.910 31 H 0.284 0.716 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.171 0.843 11.576 11.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.041 3.959 3 H 0.106 0.894 4 C -0.002 4.002 5 O -0.396 6.396 6 N -0.378 5.378 7 C 0.120 3.880 8 C -0.325 4.325 9 C -0.081 4.081 10 C -0.308 4.308 11 C 0.104 3.896 12 C -0.534 4.534 13 H 0.090 0.910 14 C -0.180 4.180 15 N -0.450 5.450 16 Si 0.802 3.198 17 H -0.182 1.182 18 H -0.189 1.189 19 H -0.190 1.190 20 C -0.287 4.287 21 H 0.066 0.934 22 H 0.100 0.900 23 H 0.055 0.945 24 H 0.070 0.930 25 H 0.104 0.896 26 H 0.246 0.754 27 H 0.224 0.776 28 H 0.134 0.866 29 H 0.138 0.862 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.291 0.965 11.225 11.270 hybrid contribution 0.576 -1.028 -0.299 1.215 sum 0.285 -0.063 10.926 10.930 Atomic orbital electron populations 1.22085 0.96090 1.01592 1.01496 1.21089 0.94240 0.96479 0.84092 0.89409 1.22436 0.96726 0.84178 0.96824 1.86504 1.73159 1.27857 1.52091 1.44611 1.74455 1.11823 1.06939 1.17813 0.92861 0.91520 0.85842 1.20248 1.20148 0.93271 0.98828 1.20663 0.96594 0.98402 0.92420 1.21021 1.15391 0.96239 0.98166 1.17738 0.87400 0.91837 0.92607 1.19828 1.36611 0.93245 1.03680 0.90992 1.26757 0.94335 0.98533 0.98339 1.69948 1.27851 1.10516 1.36640 0.85191 0.78693 0.78050 0.77905 1.18193 1.18943 1.19046 1.20654 1.16001 0.99956 0.92108 0.93444 0.90016 0.94487 0.92988 0.89633 0.75448 0.77621 0.86593 0.86243 0.89202 0.90541 0.88585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.55 9.22 71.98 0.66 -3.89 16 2 C 0.15 4.37 2.67 44.99 0.12 4.49 16 3 H 0.09 2.54 6.47 -2.38 -0.02 2.53 16 4 C 0.08 1.67 6.79 71.98 0.49 2.16 16 5 O -0.59 -13.55 12.51 -148.98 -1.86 -15.42 16 6 N -0.75 -29.56 5.23 -319.12 -1.67 -31.23 16 7 C 0.22 10.66 6.63 38.17 0.25 10.91 16 8 C -0.30 -13.62 8.85 22.59 0.20 -13.42 16 9 C -0.06 -2.88 10.02 22.20 0.22 -2.66 16 10 C -0.29 -15.18 9.79 22.76 0.22 -14.96 16 11 C 0.11 6.21 5.57 -21.31 -0.12 6.09 16 12 C -0.50 -28.96 9.05 23.46 0.21 -28.74 16 13 H 0.07 4.01 7.91 -2.91 -0.02 3.98 16 14 C 0.03 1.86 5.14 85.26 0.44 2.30 16 15 N -0.82 -45.54 10.95 21.82 0.24 -45.30 16 16 Si 0.98 40.22 29.59 68.60 2.03 42.25 16 17 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 18 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 19 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 20 C -0.26 -14.67 8.53 22.86 0.19 -14.47 16 21 H 0.05 1.53 7.56 -2.39 -0.02 1.51 16 22 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.04 1.25 7.69 -2.39 -0.02 1.23 16 24 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.40 4.99 9.12 -74.06 -0.68 4.31 16 27 H 0.39 15.74 8.39 -92.70 -0.78 14.96 16 28 H 0.12 4.47 6.07 -2.91 -0.02 4.45 16 29 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 30 H 0.09 4.53 8.06 -2.91 -0.02 4.50 16 31 H 0.28 14.19 8.30 -92.70 -0.77 13.42 16 32 H 0.10 5.63 6.16 -2.91 -0.02 5.62 16 Total: -1.00 -66.87 270.07 1.32 -65.56 By element: Atomic # 1 Polarization: 36.65 SS G_CDS: -0.32 Total: 36.33 kcal Atomic # 6 Polarization: -55.09 SS G_CDS: 2.90 Total: -52.19 kcal Atomic # 7 Polarization: -75.10 SS G_CDS: -1.43 Total: -76.53 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -1.86 Total: -15.42 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -66.87 1.32 -65.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306335534.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.580 kcal (2) G-P(sol) polarization free energy of solvation -66.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds