Wall clock time and date at job start Mon Mar 30 2020 02:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46327 * 2 1 4 4 C 1.50693 * 109.47016 * 119.99681 * 2 1 3 5 5 H 1.08006 * 119.99755 * 120.00665 * 4 2 1 6 6 C 1.37878 * 120.00454 * 300.00201 * 4 2 1 7 7 N 1.31513 * 119.99765 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00039 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47183 * 90.00434 * 8 6 4 10 10 H 1.48502 * 109.47313 * 210.00256 * 8 6 4 11 11 H 1.48499 * 109.47522 * 330.00142 * 8 6 4 12 12 N 1.46500 * 109.47336 * 240.00283 * 2 1 3 13 13 C 1.39676 * 120.00062 * 84.99377 * 12 2 1 14 14 C 1.38906 * 120.07171 * 179.97438 * 13 12 2 15 15 C 1.38111 * 119.92343 * 179.97438 * 14 13 12 16 16 C 1.38288 * 120.07382 * 0.28047 * 15 14 13 17 17 C 1.50698 * 119.92407 * 179.69843 * 16 15 14 18 18 O 1.42900 * 109.46870 * 90.00157 * 17 16 15 19 19 C 1.38286 * 120.14755 * 359.44532 * 16 15 14 20 20 C 1.38112 * 120.07587 * 0.55318 * 19 16 15 21 21 H 1.08995 * 109.47203 * 299.99792 * 1 2 3 22 22 H 1.08997 * 109.47101 * 59.99888 * 1 2 3 23 23 H 1.09003 * 109.46942 * 179.97438 * 1 2 3 24 24 H 0.97005 * 120.00083 * 179.97438 * 7 6 4 25 25 H 0.96994 * 119.99675 * 264.99805 * 12 2 1 26 26 H 1.07999 * 120.03932 * 0.02562 * 14 13 12 27 27 H 1.08002 * 119.96028 * 179.97438 * 15 14 13 28 28 H 1.09001 * 109.46776 * 210.00059 * 17 16 15 29 29 H 1.09003 * 109.47041 * 330.00009 * 17 16 15 30 30 H 0.96703 * 113.99453 * 180.02562 * 18 17 16 31 31 H 1.08002 * 119.96005 * 180.25011 * 19 16 15 32 32 H 1.07998 * 120.03717 * 179.70130 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3213 -1.1203 4.0079 9 1 3.6296 -0.5458 4.4124 10 1 1.3431 -0.9493 5.1120 11 1 2.4859 -2.5661 3.7120 12 7 2.0184 -0.6905 -1.1962 13 6 2.1517 0.0063 -2.3994 14 6 2.6152 -0.6469 -3.5343 15 6 2.7453 0.0450 -4.7225 16 6 2.4203 1.3878 -4.7817 17 6 2.5700 2.1411 -6.0783 18 8 1.3518 2.0582 -6.8207 19 6 1.9533 2.0397 -3.6551 20 6 1.8208 1.3538 -2.4636 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7080 1.1609 3.4844 25 1 2.2491 -1.6316 -1.1526 26 1 2.8726 -1.6947 -3.4878 27 1 3.1059 -0.4622 -5.6052 28 1 2.7966 3.1862 -5.8672 29 1 3.3810 1.7039 -6.6609 30 1 1.3760 2.5216 -7.6691 31 1 1.6966 3.0875 -3.7058 32 1 1.4606 1.8647 -1.5830 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306474780.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:37 Heat of formation + Delta-G solvation = -31.608998 kcal Electronic energy + Delta-G solvation = -14464.058712 eV Core-core repulsion = 12003.053271 eV Total energy + Delta-G solvation = -2461.005440 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.01746 -36.77385 -35.30979 -32.81569 -30.57362 -30.08128 -28.08356 -25.37311 -24.45878 -22.43833 -20.99013 -19.74995 -17.29976 -17.25477 -16.05040 -15.34903 -15.08486 -14.63080 -13.82447 -13.69351 -13.05924 -12.97204 -12.68067 -12.35512 -12.28192 -11.69410 -11.09792 -11.07283 -10.96177 -10.62766 -10.52457 -10.26095 -10.09143 -9.90689 -9.30351 -9.03061 -8.50984 -8.36596 -6.53438 -6.17117 -4.25435 2.02208 2.11638 3.22295 3.29105 3.31637 4.24717 4.27748 4.58195 4.82907 5.15362 5.21437 5.30064 5.55604 5.59121 5.60839 5.97183 6.24247 6.38540 6.55170 6.70795 6.90350 6.94459 7.03684 7.06300 7.18471 7.34720 7.54005 7.66781 7.72689 7.84780 8.06237 8.35629 8.69592 8.90164 9.41809 10.88719 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.063110 B = 0.005635 C = 0.005427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.563442 B = 4967.577556 C = 5158.176333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.266 3.734 3 H 0.041 0.959 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.723 5.723 13 C 0.245 3.755 14 C -0.223 4.223 15 C -0.050 4.050 16 C -0.187 4.187 17 C 0.131 3.869 18 O -0.571 6.571 19 C -0.049 4.049 20 C -0.206 4.206 21 H 0.090 0.910 22 H 0.014 0.986 23 H 0.028 0.972 24 H 0.264 0.736 25 H 0.390 0.610 26 H 0.113 0.887 27 H 0.110 0.890 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.370 0.630 31 H 0.112 0.888 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.760 1.505 -12.455 12.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.163 3.837 3 H 0.058 0.942 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.344 5.344 13 C 0.135 3.865 14 C -0.247 4.247 15 C -0.069 4.069 16 C -0.190 4.190 17 C 0.054 3.946 18 O -0.376 6.376 19 C -0.068 4.068 20 C -0.229 4.229 21 H 0.108 0.892 22 H 0.033 0.967 23 H 0.047 0.953 24 H 0.074 0.926 25 H 0.223 0.777 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.215 0.785 31 H 0.130 0.870 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.409 1.370 -11.537 11.865 hybrid contribution 0.556 -0.485 0.459 0.869 sum 2.965 0.885 -11.078 11.502 Atomic orbital electron populations 1.22183 0.98776 0.99561 1.00634 1.18740 0.90728 0.93477 0.80735 0.94173 1.21210 1.32151 1.13241 0.90298 0.92149 1.24876 0.94755 0.94995 0.99068 1.69879 1.35977 1.22635 1.23936 0.86437 0.78600 0.79910 0.82111 1.20530 1.21036 1.19866 1.45636 1.69037 1.12081 1.07671 1.18097 0.90247 0.91576 0.86619 1.20487 1.11522 0.99863 0.92798 1.20548 0.96868 0.93086 0.96372 1.19084 1.10914 0.94908 0.94075 1.20831 0.85687 0.97779 0.90296 1.86655 1.37206 1.78370 1.35341 1.20672 0.95417 0.98758 0.91922 1.20783 1.09661 0.93606 0.98852 0.89195 0.96706 0.95263 0.92565 0.77731 0.86880 0.87209 0.93675 0.93792 0.78459 0.87018 0.85515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.20 37.16 0.34 -3.36 16 2 C 0.27 6.55 2.25 -69.08 -0.16 6.39 16 3 H 0.04 1.08 6.49 -51.93 -0.34 0.74 16 4 C -0.53 -14.06 8.73 -34.44 -0.30 -14.36 16 5 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.44 11.32 55.43 0.63 -23.81 16 8 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.72 -15.45 5.24 -53.29 -0.28 -15.73 16 13 C 0.24 4.89 6.64 -83.79 -0.56 4.34 16 14 C -0.22 -3.91 9.90 -39.38 -0.39 -4.30 16 15 C -0.05 -0.80 9.69 -39.61 -0.38 -1.19 16 16 C -0.19 -3.03 5.51 -104.59 -0.58 -3.61 16 17 C 0.13 1.66 7.17 36.00 0.26 1.92 16 18 O -0.57 -7.42 13.64 -35.23 -0.48 -7.90 16 19 C -0.05 -0.84 9.69 -39.61 -0.38 -1.23 16 20 C -0.21 -4.07 8.85 -39.38 -0.35 -4.42 16 21 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 22 H 0.01 0.32 7.70 -51.93 -0.40 -0.08 16 23 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 25 H 0.39 7.76 8.55 -40.82 -0.35 7.41 16 26 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 27 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 28 H 0.05 0.50 8.09 -51.93 -0.42 0.08 16 29 H 0.04 0.47 8.08 -51.93 -0.42 0.05 16 30 H 0.37 2.73 9.12 45.56 0.42 3.15 16 31 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.13 2.65 6.12 -52.49 -0.32 2.33 16 LS Contribution 272.57 15.07 4.11 4.11 Total: -1.00 -29.25 272.57 -7.01 -36.27 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -3.38 Total: 9.60 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -2.59 Total: -18.15 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.35 Total: -39.54 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.48 Total: -7.90 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.25 -7.01 -36.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306474780.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.658 kcal (2) G-P(sol) polarization free energy of solvation -29.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds