Wall clock time and date at job start Mon Mar 30 2020 02:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47559 * 2 1 4 4 C 1.52999 * 109.47365 * 239.99606 * 2 1 3 5 5 O 1.42901 * 109.47268 * 305.00382 * 4 2 1 6 6 N 1.46500 * 109.46899 * 119.99889 * 2 1 3 7 7 C 1.38859 * 119.99987 * 274.99963 * 6 2 1 8 8 C 1.39563 * 119.84485 * 359.72884 * 7 6 2 9 9 C 1.36333 * 120.16395 * 179.72064 * 8 7 6 10 10 C 1.40889 * 119.83512 * 0.54673 * 9 8 7 11 11 C 1.41136 * 120.15695 * 179.69878 * 10 9 8 12 12 H 1.08000 * 120.00219 * 204.63059 * 11 10 9 13 13 C 1.39867 * 119.99818 * 24.64016 * 11 10 9 14 14 N 1.30905 * 120.00071 * 17.94439 * 13 11 10 15 15 Si 1.86798 * 119.99661 * 197.95494 * 13 11 10 16 16 H 1.48496 * 109.47461 * 89.99351 * 15 13 11 17 17 H 1.48504 * 109.46925 * 209.99641 * 15 13 11 18 18 H 1.48494 * 109.47370 * 329.99246 * 15 13 11 19 19 C 1.40889 * 119.68959 * 359.72887 * 10 9 8 20 20 C 1.36340 * 119.83295 * 359.97438 * 19 10 9 21 21 H 1.08998 * 109.47559 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46919 * 60.00130 * 1 2 3 23 23 H 1.08996 * 109.47193 * 300.00441 * 1 2 3 24 24 H 1.09007 * 109.47101 * 65.00154 * 4 2 1 25 25 H 1.08997 * 109.47365 * 184.99884 * 4 2 1 26 26 H 0.96698 * 113.99853 * 179.97438 * 5 4 2 27 27 H 0.97008 * 120.00291 * 95.00396 * 6 2 1 28 28 H 1.08001 * 119.91554 * 359.97438 * 8 7 6 29 29 H 1.07999 * 120.08489 * 180.27911 * 9 8 7 30 30 H 0.97002 * 119.99637 * 179.97438 * 14 13 11 31 31 H 1.07992 * 120.08266 * 179.97438 * 19 10 9 32 32 H 1.08008 * 119.91512 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.4702 -2.0304 -1.3094 6 7 2.0182 -0.6906 1.1962 7 6 2.1508 0.0021 2.3923 8 6 1.8234 1.3576 2.4499 9 6 1.9457 2.0427 3.6222 10 6 2.4149 1.3818 4.7746 11 6 2.5501 2.0860 5.9902 12 1 3.2482 1.7417 6.7390 13 6 1.7801 3.2297 6.2253 14 7 0.7073 3.4549 5.5097 15 14 2.2826 4.4358 7.5602 16 1 3.1851 5.4645 6.9837 17 1 1.0720 5.0938 8.1141 18 1 2.9902 3.7081 8.6441 19 6 2.7490 0.0147 4.7077 20 6 2.6159 -0.6592 3.5300 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8899 24 1 1.7517 -0.1584 -2.1370 25 1 3.1263 -0.7995 -1.2055 26 1 1.7500 -2.5462 -2.0780 27 1 2.2490 -1.6318 1.1527 28 1 1.4683 1.8640 1.5645 29 1 1.6876 3.0905 3.6664 30 1 0.1730 4.2479 5.6731 31 1 3.1097 -0.4980 5.5870 32 1 2.8721 -1.7071 3.4771 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307514718.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:15 Heat of formation + Delta-G solvation = -33.238474 kcal Electronic energy + Delta-G solvation = -14610.909704 eV Core-core repulsion = 12149.833605 eV Total energy + Delta-G solvation = -2461.076100 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.37611 -37.05955 -34.90936 -33.12016 -30.59932 -29.40136 -27.92927 -26.21966 -24.19942 -21.65004 -20.66317 -19.40722 -17.58279 -17.15781 -16.07172 -15.40581 -14.88644 -14.40510 -13.88341 -13.43479 -13.15608 -12.62682 -12.36245 -12.32000 -11.85035 -11.72208 -11.28194 -11.15320 -11.00718 -10.70695 -10.56383 -10.41444 -10.04402 -9.64041 -9.23246 -9.19240 -8.47873 -7.44383 -6.59865 -6.32310 -3.98443 2.95151 3.14478 3.17837 3.21212 3.39816 4.08737 4.22463 4.43157 4.80845 5.10771 5.26898 5.41624 5.71326 5.84163 5.94097 6.08139 6.29754 6.33486 6.40911 6.70293 6.98219 7.01428 7.24978 7.40799 7.56083 7.63162 7.74404 7.90446 8.19736 8.35351 8.56317 8.78081 8.88138 9.10567 9.20586 10.41859 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.059817 B = 0.006096 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.982560 B = 4592.125098 C = 4887.772537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.161 3.839 3 H 0.081 0.919 4 C 0.069 3.931 5 O -0.567 6.567 6 N -0.752 5.752 7 C 0.095 3.905 8 C -0.167 4.167 9 C -0.123 4.123 10 C 0.072 3.928 11 C -0.468 4.468 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.809 5.809 15 Si 0.903 3.097 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.265 1.265 19 C -0.185 4.185 20 C -0.161 4.161 21 H 0.060 0.940 22 H 0.047 0.953 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.373 0.627 27 H 0.387 0.613 28 H 0.089 0.911 29 H 0.118 0.882 30 H 0.275 0.725 31 H 0.091 0.909 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.349 -4.027 -10.552 11.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.054 3.946 3 H 0.099 0.901 4 C -0.009 4.009 5 O -0.372 6.372 6 N -0.387 5.387 7 C -0.002 4.002 8 C -0.189 4.189 9 C -0.143 4.143 10 C 0.069 3.931 11 C -0.499 4.499 12 H 0.090 0.910 13 C -0.140 4.140 14 N -0.437 5.437 15 Si 0.728 3.272 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.189 1.189 19 C -0.206 4.206 20 C -0.183 4.183 21 H 0.079 0.921 22 H 0.066 0.934 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.219 0.781 27 H 0.220 0.780 28 H 0.107 0.893 29 H 0.136 0.864 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.808 -3.494 -10.093 10.711 hybrid contribution 0.413 0.106 0.054 0.429 sum 1.221 -3.388 -10.039 10.666 Atomic orbital electron populations 1.22189 0.96534 1.02243 1.01198 1.20676 0.93938 0.95859 0.84167 0.90107 1.22549 0.96674 0.83879 0.97827 1.86545 1.72930 1.27509 1.50179 1.43889 1.76791 1.11292 1.06755 1.17394 1.05024 0.91966 0.85795 1.20108 1.08114 0.92757 0.97931 1.20930 1.02638 0.99727 0.91025 1.17499 0.91983 0.90554 0.93070 1.19367 1.20450 1.08231 1.01842 0.90980 1.25785 0.93448 0.98021 0.96785 1.69863 1.11001 1.25327 1.37459 0.86409 0.78818 0.80683 0.81278 1.19587 1.20621 1.18891 1.20543 1.09581 0.94585 0.95851 1.19814 1.07872 0.97541 0.93076 0.92134 0.93377 0.92062 0.93156 0.93354 0.78099 0.77958 0.89345 0.86426 0.91389 0.89105 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.22 37.15 0.34 -2.19 16 2 C 0.16 2.49 2.66 -67.93 -0.18 2.31 16 3 H 0.08 1.29 6.44 -51.93 -0.33 0.96 16 4 C 0.07 0.82 6.79 37.16 0.25 1.07 16 5 O -0.57 -6.61 12.51 -35.23 -0.44 -7.05 16 6 N -0.75 -13.84 5.20 -52.04 -0.27 -14.11 16 7 C 0.10 2.14 6.65 -83.69 -0.56 1.59 16 8 C -0.17 -3.98 8.76 -39.77 -0.35 -4.33 16 9 C -0.12 -3.29 8.64 -39.27 -0.34 -3.63 16 10 C 0.07 1.98 5.57 -106.79 -0.60 1.39 16 11 C -0.47 -12.94 9.03 -37.87 -0.34 -13.29 16 12 H 0.07 1.93 7.91 -52.49 -0.41 1.52 16 13 C 0.07 1.95 5.13 -17.34 -0.09 1.87 16 14 N -0.81 -21.86 10.96 55.54 0.61 -21.25 16 15 Si 0.90 19.53 29.60 -169.99 -5.03 14.50 16 16 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 17 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 19 C -0.19 -4.72 9.74 -39.26 -0.38 -5.10 16 20 C -0.16 -3.74 9.82 -39.77 -0.39 -4.13 16 21 H 0.06 0.98 7.56 -51.93 -0.39 0.58 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 1.10 7.69 -51.93 -0.40 0.70 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.37 2.49 9.12 45.56 0.42 2.91 16 27 H 0.39 6.75 8.38 -40.82 -0.34 6.41 16 28 H 0.09 1.91 6.06 -52.49 -0.32 1.60 16 29 H 0.12 3.25 6.16 -52.49 -0.32 2.92 16 30 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 31 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 32 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 269.75 15.07 4.07 4.07 Total: -1.00 -29.86 269.75 -7.05 -36.91 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -3.36 Total: 11.39 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: -2.63 Total: -24.46 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.34 Total: -35.36 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.44 Total: -7.05 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.86 -7.05 -36.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307514718.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.673 kcal (2) G-P(sol) polarization free energy of solvation -29.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds