Wall clock time and date at job start Mon Mar 30 2020 02:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47493 * 2 1 4 4 C 1.53001 * 109.47094 * 120.00232 * 2 1 3 5 5 O 1.42900 * 109.47051 * 54.99561 * 4 2 1 6 6 N 1.46497 * 109.46943 * 239.99887 * 2 1 3 7 7 C 1.38859 * 120.00079 * 85.00363 * 6 2 1 8 8 C 1.39572 * 119.83995 * 359.72218 * 7 6 2 9 9 C 1.36342 * 120.15797 * 179.71941 * 8 7 6 10 10 C 1.40884 * 119.83771 * 0.55352 * 9 8 7 11 11 C 1.41132 * 120.15590 * 179.69615 * 10 9 8 12 12 H 1.07997 * 120.00548 * 204.63038 * 11 10 9 13 13 C 1.39865 * 120.00050 * 24.63611 * 11 10 9 14 14 N 1.30906 * 119.99794 * 17.95061 * 13 11 10 15 15 Si 1.86794 * 120.00203 * 197.95122 * 13 11 10 16 16 H 1.48504 * 109.47127 * 59.99836 * 15 13 11 17 17 H 1.48504 * 109.47448 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47167 * 300.00026 * 15 13 11 19 19 C 1.40883 * 119.68941 * 359.72255 * 10 9 8 20 20 C 1.36349 * 119.83656 * 359.97438 * 19 10 9 21 21 H 1.09001 * 109.47246 * 299.99857 * 1 2 3 22 22 H 1.08998 * 109.46985 * 59.99938 * 1 2 3 23 23 H 1.09005 * 109.47665 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46865 * 295.00180 * 4 2 1 25 25 H 1.08995 * 109.47539 * 174.99863 * 4 2 1 26 26 H 0.96707 * 113.99573 * 179.97438 * 5 4 2 27 27 H 0.96997 * 120.00347 * 264.99763 * 6 2 1 28 28 H 1.07995 * 119.91551 * 359.97438 * 8 7 6 29 29 H 1.08001 * 120.07766 * 180.27656 * 9 8 7 30 30 H 0.97005 * 120.00112 * 180.02562 * 14 13 11 31 31 H 1.07997 * 120.08608 * 179.97438 * 19 10 9 32 32 H 1.08001 * 119.91977 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.4701 -2.0304 1.3094 6 7 2.0183 -0.6906 -1.1961 7 6 2.1509 0.0021 -2.3923 8 6 1.8126 1.3548 -2.4526 9 6 1.9458 2.0426 -3.6223 10 6 2.4151 1.3818 -4.7746 11 6 2.5494 2.0857 -5.9904 12 1 2.5153 1.5532 -6.9294 13 6 2.7268 3.4730 -5.9794 14 7 3.1167 4.0743 -4.8839 15 14 2.4075 4.4678 -7.5278 16 1 0.9942 4.2903 -7.9476 17 1 2.6656 5.9046 -7.2552 18 1 3.3083 3.9996 -8.6116 19 6 2.7492 0.0148 -4.7077 20 6 2.6169 -0.6590 -3.5297 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.7515 -0.1584 2.1370 25 1 3.1262 -0.7996 1.2056 26 1 1.7505 -2.5464 2.0777 27 1 2.2490 -1.6318 -1.1526 28 1 1.4484 1.8588 -1.5697 29 1 1.6878 3.0905 -3.6664 30 1 3.2394 5.0365 -4.8761 31 1 3.1092 -0.4983 -5.5872 32 1 2.8722 -1.7071 -3.4769 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307514729.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:17 Heat of formation + Delta-G solvation = -53.992273 kcal Electronic energy + Delta-G solvation = -14605.648901 eV Core-core repulsion = 12143.672849 eV Total energy + Delta-G solvation = -2461.976052 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.99443 -38.37291 -36.37948 -34.88230 -32.18925 -31.32423 -29.71045 -27.33893 -26.02879 -23.35172 -22.45484 -20.94751 -19.14851 -18.58486 -17.66994 -16.83653 -16.62645 -15.77821 -15.33928 -14.89157 -14.78173 -14.27397 -14.03834 -13.79250 -13.42634 -13.36422 -13.17477 -12.72803 -12.52073 -12.36328 -12.20328 -11.78702 -11.57207 -11.15214 -11.03421 -10.88172 -10.30343 -9.39470 -8.53952 -8.14068 -5.99337 1.12207 1.19679 1.40538 1.51530 1.60989 2.28278 2.85403 2.89530 3.48059 3.86113 4.00755 4.24554 4.39656 4.50329 4.55307 4.63809 4.75410 4.91294 5.03008 5.07737 5.18176 5.29576 5.44759 5.46940 5.71661 5.82293 5.97802 6.19564 6.40804 6.69102 6.88726 6.97657 7.09359 7.17438 7.34693 8.49416 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.059658 B = 0.006048 C = 0.005741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.225656 B = 4628.439838 C = 4875.937624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.148 3.852 3 H 0.074 0.926 4 C 0.079 3.921 5 O -0.584 6.584 6 N -0.743 5.743 7 C 0.113 3.887 8 C -0.174 4.174 9 C -0.142 4.142 10 C 0.032 3.968 11 C -0.507 4.507 12 H 0.067 0.933 13 C 0.032 3.968 14 N -0.842 5.842 15 Si 0.977 3.023 16 H -0.264 1.264 17 H -0.269 1.269 18 H -0.262 1.262 19 C -0.195 4.195 20 C -0.170 4.170 21 H 0.074 0.926 22 H 0.033 0.967 23 H 0.055 0.945 24 H 0.079 0.921 25 H 0.053 0.947 26 H 0.396 0.604 27 H 0.395 0.605 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.282 0.718 31 H 0.096 0.904 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.140 -5.508 11.054 12.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.042 3.958 3 H 0.092 0.908 4 C 0.001 3.999 5 O -0.393 6.393 6 N -0.378 5.378 7 C 0.014 3.986 8 C -0.196 4.196 9 C -0.162 4.162 10 C 0.030 3.970 11 C -0.539 4.539 12 H 0.085 0.915 13 C -0.179 4.179 14 N -0.471 5.471 15 Si 0.798 3.202 16 H -0.188 1.188 17 H -0.194 1.194 18 H -0.186 1.186 19 C -0.216 4.216 20 C -0.192 4.192 21 H 0.093 0.907 22 H 0.052 0.948 23 H 0.074 0.926 24 H 0.097 0.903 25 H 0.072 0.928 26 H 0.246 0.754 27 H 0.230 0.770 28 H 0.125 0.875 29 H 0.118 0.882 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.409 -4.944 10.729 12.056 hybrid contribution 0.353 0.118 -0.331 0.498 sum -2.056 -4.826 10.397 11.646 Atomic orbital electron populations 1.22095 0.96180 1.01871 1.01187 1.20963 0.94169 0.96086 0.84616 0.90778 1.22373 0.96755 0.84227 0.96586 1.86473 1.73173 1.27560 1.52047 1.43979 1.75864 1.11608 1.06314 1.17509 1.02664 0.91416 0.87025 1.20261 1.08210 0.93380 0.97782 1.20872 1.02633 0.99331 0.93396 1.17827 0.92860 0.92282 0.94073 1.19561 1.47609 0.93075 0.93631 0.91477 1.26606 0.91688 0.98942 1.00704 1.69915 1.34866 1.11622 1.30655 0.85345 0.79711 0.76971 0.78145 1.18835 1.19360 1.18634 1.20744 1.08034 0.95580 0.97203 1.20101 1.07667 0.98896 0.92533 0.90678 0.94755 0.92569 0.90304 0.92849 0.75401 0.77045 0.87487 0.88244 0.90738 0.88599 0.86798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.34 9.20 71.98 0.66 -3.67 16 2 C 0.15 4.21 2.66 44.99 0.12 4.33 16 3 H 0.07 2.25 6.46 -2.39 -0.02 2.23 16 4 C 0.08 1.59 6.79 71.98 0.49 2.07 16 5 O -0.58 -11.43 12.51 -148.98 -1.86 -13.29 16 6 N -0.74 -25.74 5.20 -318.55 -1.66 -27.40 16 7 C 0.11 4.99 6.65 38.67 0.26 5.24 16 8 C -0.17 -8.33 8.73 22.15 0.19 -8.14 16 9 C -0.14 -7.84 8.64 22.48 0.19 -7.65 16 10 C 0.03 1.85 5.57 -21.27 -0.12 1.73 16 11 C -0.51 -29.13 9.03 23.37 0.21 -28.91 16 12 H 0.07 3.73 7.91 -2.91 -0.02 3.71 16 13 C 0.03 1.74 5.13 85.22 0.44 2.17 16 14 N -0.84 -46.61 10.96 21.82 0.24 -46.37 16 15 Si 0.98 40.67 29.59 68.60 2.03 42.70 16 16 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 17 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 18 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 19 C -0.20 -10.11 9.74 22.48 0.22 -9.89 16 20 C -0.17 -7.76 9.82 22.15 0.22 -7.54 16 21 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.03 1.12 7.63 -2.39 -0.02 1.10 16 23 H 0.06 1.62 7.56 -2.38 -0.02 1.61 16 24 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.40 3.75 9.12 -74.05 -0.68 3.07 16 27 H 0.40 12.66 8.38 -92.71 -0.78 11.89 16 28 H 0.11 4.60 6.02 -2.91 -0.02 4.59 16 29 H 0.10 5.74 6.16 -2.91 -0.02 5.73 16 30 H 0.28 14.21 8.30 -92.70 -0.77 13.44 16 31 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 32 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -65.31 269.63 1.31 -63.99 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: -0.32 Total: 30.63 kcal Atomic # 6 Polarization: -53.13 SS G_CDS: 2.88 Total: -50.25 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -1.42 Total: -73.77 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -1.86 Total: -13.29 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -65.31 1.31 -63.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307514729.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.000 kcal (2) G-P(sol) polarization free energy of solvation -65.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds