Wall clock time and date at job start Mon Mar 30 2020 02:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47135 * 2 1 4 4 C 1.50699 * 109.47345 * 120.00083 * 2 1 3 5 5 H 1.08001 * 120.00126 * 120.00020 * 4 2 1 6 6 C 1.37874 * 119.99702 * 300.00131 * 4 2 1 7 7 N 1.31520 * 119.99682 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00422 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.47144 * 89.99828 * 8 6 4 10 10 H 1.48497 * 109.47195 * 209.99920 * 8 6 4 11 11 H 1.48497 * 109.46931 * 330.00075 * 8 6 4 12 12 N 1.46900 * 109.47325 * 240.00266 * 2 1 3 13 13 C 1.46900 * 110.99858 * 84.99732 * 12 2 1 14 14 C 1.50707 * 109.47057 * 180.02562 * 13 12 2 15 15 C 1.32988 * 119.99728 * 242.05238 * 14 13 12 16 16 C 1.47068 * 120.00334 * 11.47019 * 15 14 13 17 17 C 1.36221 * 125.95991 * 188.71006 * 16 15 14 18 18 C 1.40831 * 106.72805 * 179.97438 * 17 16 15 19 19 C 1.34798 * 107.06262 * 0.02562 * 18 17 16 20 20 O 1.34306 * 108.71780 * 359.73622 * 19 18 17 21 21 H 1.09005 * 109.47391 * 60.00192 * 1 2 3 22 22 H 1.09002 * 109.47135 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47501 * 299.99786 * 1 2 3 24 24 H 0.97007 * 119.99843 * 180.02562 * 7 6 4 25 25 H 1.00901 * 111.00021 * 321.04490 * 12 2 1 26 26 H 1.08995 * 109.47519 * 299.99910 * 13 12 2 27 27 H 1.08994 * 109.47216 * 60.00206 * 13 12 2 28 28 H 1.07994 * 120.00045 * 62.04926 * 14 13 12 29 29 H 1.07996 * 119.99522 * 191.46333 * 15 14 13 30 30 H 1.07997 * 126.63774 * 0.02562 * 17 16 15 31 31 H 1.07999 * 126.47091 * 179.97438 * 18 17 16 32 32 H 1.08003 * 125.63827 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4826 7 7 2.1373 -0.8596 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8021 0.8744 2.6993 10 1 0.9772 1.9952 3.9071 11 1 0.8491 2.1773 1.4923 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2227 -2.3468 14 6 2.5874 -0.5216 -3.5561 15 6 3.7264 -0.1537 -4.1356 16 6 4.6183 0.8027 -3.4629 17 6 5.7207 1.3884 -4.0084 18 6 6.2672 2.2260 -3.0169 19 6 5.4824 2.1127 -1.9268 20 8 4.4845 1.2567 -2.2012 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.9026 -0.5285 4.4375 25 1 1.4496 -1.4979 -1.4101 26 1 1.0871 0.6164 -2.5525 27 1 2.7587 1.0463 -2.1182 28 1 2.0243 -1.3538 -3.9519 29 1 3.9963 -0.5573 -5.1002 30 1 6.1014 1.2398 -5.0080 31 1 7.1490 2.8422 -3.1117 32 1 5.6289 2.6289 -0.9895 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308604564.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:15 Heat of formation + Delta-G solvation = 24.286506 kcal Electronic energy + Delta-G solvation = -14787.368296 eV Core-core repulsion = 12328.786666 eV Total energy + Delta-G solvation = -2458.581629 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.35174 -38.32939 -35.73336 -34.17152 -33.82035 -31.28748 -29.24463 -27.16520 -25.75243 -22.64837 -22.53860 -22.05360 -20.51252 -18.84694 -17.64967 -16.98108 -16.87042 -16.24939 -15.97024 -15.60648 -15.02602 -14.58286 -14.25090 -13.87545 -13.68072 -13.50694 -13.21887 -13.12663 -12.72536 -12.27549 -12.06094 -11.99328 -11.54934 -11.23890 -11.06389 -10.75471 -10.63085 -9.07293 -8.72299 -8.27686 -6.29836 0.24440 1.27287 1.33460 1.43689 1.48410 2.08010 2.27563 2.31037 3.06092 3.63631 3.89930 4.11658 4.22050 4.27707 4.40190 4.46686 4.53662 4.65823 4.68633 4.89668 4.93842 4.97956 5.03226 5.26435 5.37642 5.50385 5.65390 5.67461 5.85738 6.02051 6.38540 6.68858 6.75750 6.80613 7.35026 8.89940 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032393 B = 0.007840 C = 0.006995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.169995 B = 3570.749080 C = 4001.893144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.189 3.811 3 H 0.021 0.979 4 C -0.502 4.502 5 H 0.033 0.967 6 C 0.008 3.992 7 N -0.951 5.951 8 Si 0.953 3.047 9 H -0.265 1.265 10 H -0.297 1.297 11 H -0.254 1.254 12 N -0.676 5.676 13 C 0.060 3.940 14 C -0.125 4.125 15 C -0.096 4.096 16 C -0.009 4.009 17 C -0.204 4.204 18 C -0.218 4.218 19 C -0.067 4.067 20 O -0.179 6.179 21 H 0.059 0.941 22 H 0.058 0.942 23 H 0.036 0.964 24 H 0.265 0.735 25 H 0.336 0.664 26 H 0.038 0.962 27 H 0.080 0.920 28 H 0.147 0.853 29 H 0.178 0.822 30 H 0.174 0.826 31 H 0.172 0.828 32 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.306 6.216 -17.086 18.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.080 3.920 3 H 0.039 0.961 4 C -0.541 4.541 5 H 0.051 0.949 6 C -0.188 4.188 7 N -0.592 5.592 8 Si 0.780 3.220 9 H -0.191 1.191 10 H -0.224 1.224 11 H -0.178 1.178 12 N -0.306 5.306 13 C -0.068 4.068 14 C -0.143 4.143 15 C -0.115 4.115 16 C -0.058 4.058 17 C -0.223 4.223 18 C -0.237 4.237 19 C -0.134 4.134 20 O -0.076 6.076 21 H 0.078 0.922 22 H 0.077 0.923 23 H 0.054 0.946 24 H 0.074 0.926 25 H 0.154 0.846 26 H 0.056 0.944 27 H 0.098 0.902 28 H 0.165 0.835 29 H 0.195 0.805 30 H 0.192 0.808 31 H 0.189 0.811 32 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 2.742 6.214 -16.549 17.888 hybrid contribution -1.069 0.591 0.624 1.372 sum 1.673 6.805 -15.925 17.398 Atomic orbital electron populations 1.22721 0.99347 1.01582 0.99905 1.19373 0.89985 0.93828 0.88846 0.96103 1.21267 1.30147 1.12431 0.90250 0.94876 1.25808 0.97620 1.00057 0.95322 1.70054 1.48051 1.42628 0.98509 0.85800 0.79129 0.79937 0.77127 1.19091 1.22435 1.17832 1.60512 1.57969 1.09381 1.02755 1.21643 0.99438 0.96122 0.89554 1.23625 0.97038 0.98355 0.95253 1.21361 0.92802 0.96998 1.00325 1.21528 0.99800 1.01318 0.83184 1.22204 0.97170 1.00758 1.02145 1.22064 1.03540 1.04709 0.93345 1.24839 0.89831 0.96485 1.02278 1.84455 1.43852 1.49006 1.30320 0.92246 0.92290 0.94589 0.92589 0.84633 0.94369 0.90192 0.83503 0.80512 0.80846 0.81056 0.77152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.38 8.64 71.98 0.62 -6.76 16 2 C 0.19 9.12 2.16 44.17 0.10 9.21 16 3 H 0.02 1.06 6.86 -2.39 -0.02 1.05 16 4 C -0.50 -29.83 9.42 25.60 0.24 -29.59 16 5 H 0.03 2.22 8.06 -2.91 -0.02 2.19 16 6 C 0.01 0.50 5.45 84.65 0.46 0.96 16 7 N -0.95 -60.99 13.96 21.45 0.30 -60.69 16 8 Si 0.95 45.97 24.37 68.60 1.67 47.64 16 9 H -0.26 -12.04 6.87 99.48 0.68 -11.35 16 10 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 11 H -0.25 -11.51 6.53 99.48 0.65 -10.86 16 12 N -0.68 -28.28 6.22 -499.47 -3.11 -31.39 16 13 C 0.06 2.07 5.51 85.56 0.47 2.55 16 14 C -0.12 -3.31 9.84 24.52 0.24 -3.07 16 15 C -0.10 -2.36 10.08 23.42 0.24 -2.12 16 16 C -0.01 -0.27 6.71 24.12 0.16 -0.11 16 17 C -0.20 -5.06 10.85 22.43 0.24 -4.82 16 18 C -0.22 -5.39 10.88 22.11 0.24 -5.15 16 19 C -0.07 -1.97 12.08 67.03 0.81 -1.16 16 20 O -0.18 -6.40 7.27 -7.00 -0.05 -6.45 16 21 H 0.06 2.08 7.45 -2.38 -0.02 2.06 16 22 H 0.06 2.38 8.13 -2.39 -0.02 2.36 16 23 H 0.04 1.56 3.27 -2.39 -0.01 1.55 16 24 H 0.27 15.86 8.31 -92.70 -0.77 15.09 16 25 H 0.34 12.86 8.46 -89.69 -0.76 12.10 16 26 H 0.04 1.23 7.44 -2.39 -0.02 1.21 16 27 H 0.08 3.08 4.18 -18.11 -0.08 3.00 16 28 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 29 H 0.18 2.84 8.06 -2.91 -0.02 2.81 16 30 H 0.17 3.11 8.06 -2.91 -0.02 3.08 16 31 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 32 H 0.21 5.15 8.06 -2.91 -0.02 5.12 16 Total: -1.00 -71.77 266.42 2.85 -68.91 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.21 Total: 22.03 kcal Atomic # 6 Polarization: -43.88 SS G_CDS: 3.82 Total: -40.06 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -2.81 Total: -92.08 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.05 Total: -6.45 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.67 Total: 47.64 kcal Total: -71.77 2.85 -68.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308604564.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.201 kcal (2) G-P(sol) polarization free energy of solvation -71.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds