Wall clock time and date at job start Mon Mar 30 2020 02:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47289 * 2 1 4 4 C 1.50698 * 109.47074 * 239.99601 * 2 1 3 5 5 H 1.07997 * 120.00435 * 239.99854 * 4 2 1 6 6 C 1.37881 * 119.99695 * 60.00302 * 4 2 1 7 7 N 1.31512 * 120.00086 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00044 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47104 * 89.99685 * 8 6 4 10 10 H 1.48494 * 109.47067 * 210.00185 * 8 6 4 11 11 H 1.48507 * 109.46991 * 330.00204 * 8 6 4 12 12 N 1.46905 * 109.47069 * 120.00184 * 2 1 3 13 13 C 1.46901 * 110.99889 * 274.99453 * 12 2 1 14 14 C 1.50699 * 109.47119 * 179.97438 * 13 12 2 15 15 C 1.32985 * 119.99918 * 125.00522 * 14 13 12 16 16 C 1.47071 * 120.00153 * 180.02562 * 15 14 13 17 17 C 1.36230 * 125.95646 * 179.97438 * 16 15 14 18 18 C 1.40830 * 106.71894 * 179.76279 * 17 16 15 19 19 C 1.34787 * 107.07158 * 0.34986 * 18 17 16 20 20 O 1.34306 * 108.71362 * 359.64338 * 19 18 17 21 21 H 1.08998 * 109.47289 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46900 * 299.99774 * 1 2 3 23 23 H 1.08997 * 109.47170 * 59.99785 * 1 2 3 24 24 H 0.97001 * 120.00382 * 179.97438 * 7 6 4 25 25 H 1.00899 * 111.00277 * 151.04408 * 12 2 1 26 26 H 1.09003 * 109.46708 * 60.00144 * 13 12 2 27 27 H 1.08994 * 109.47517 * 300.00094 * 13 12 2 28 28 H 1.08004 * 120.00476 * 305.00623 * 14 13 12 29 29 H 1.08008 * 120.00098 * 359.97438 * 15 14 13 30 30 H 1.07999 * 126.63864 * 359.97438 * 17 16 15 31 31 H 1.08002 * 126.46212 * 180.26602 * 18 17 16 32 32 H 1.08002 * 125.64654 * 179.91485 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1119 11 1 3.6308 -1.7568 -3.7119 12 7 2.0196 -0.6926 1.1995 13 6 2.0825 0.2225 2.3469 14 6 2.5874 -0.5219 3.5560 15 6 3.6481 -0.0710 4.2195 16 6 4.1411 -0.7977 5.3992 17 6 5.2117 -0.4469 6.1651 18 6 5.3165 -1.4149 7.1826 19 6 4.3222 -2.3036 6.9872 20 8 3.6124 -1.9264 5.9112 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 0.7087 1.1612 -3.4844 25 1 2.9173 -1.1206 1.0288 26 1 1.0871 0.6163 2.5525 27 1 2.7589 1.0461 2.1183 28 1 2.0878 -1.4216 3.8838 29 1 4.1479 0.8285 3.8915 30 1 5.8536 0.4098 6.0218 31 1 6.0552 -1.4409 7.9701 32 1 4.1258 -3.1727 7.5976 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308604593.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:20 Heat of formation + Delta-G solvation = 5.898975 kcal Electronic energy + Delta-G solvation = -13986.063879 eV Core-core repulsion = 11526.684906 eV Total energy + Delta-G solvation = -2459.378972 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.36583 -38.13795 -35.74926 -34.09316 -33.76318 -31.08993 -29.11631 -27.37277 -25.64051 -22.84827 -22.18374 -21.67625 -20.43519 -18.56664 -18.32823 -16.97087 -16.90279 -16.33701 -15.65412 -15.37580 -14.92794 -14.36984 -13.91170 -13.75965 -13.53705 -13.38570 -13.06390 -12.83850 -12.65437 -12.56061 -12.19884 -12.15613 -11.78621 -11.35760 -10.91041 -10.71345 -10.57868 -9.10334 -8.87570 -8.13783 -6.28310 0.16170 1.42764 1.43795 1.44525 1.54163 2.05277 2.12773 2.41969 3.14765 3.53000 3.88976 4.10379 4.18685 4.21853 4.41668 4.65584 4.71730 4.84331 4.88132 4.99991 5.07387 5.19438 5.22801 5.38972 5.46268 5.54870 5.66040 5.70549 5.85672 6.21257 6.24714 6.44234 6.74817 6.97335 7.42146 8.91869 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.052416 B = 0.004506 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.058224 B = 6212.705056 C = 6437.883347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.213 3.787 3 H -0.026 1.026 4 C -0.540 4.540 5 H 0.059 0.941 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.964 3.036 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.268 1.268 12 N -0.686 5.686 13 C 0.088 3.912 14 C -0.113 4.113 15 C -0.098 4.098 16 C -0.006 4.006 17 C -0.204 4.204 18 C -0.223 4.223 19 C -0.044 4.044 20 O -0.196 6.196 21 H 0.027 0.973 22 H 0.023 0.977 23 H 0.058 0.942 24 H 0.263 0.737 25 H 0.334 0.666 26 H 0.074 0.926 27 H 0.031 0.969 28 H 0.111 0.889 29 H 0.156 0.844 30 H 0.165 0.835 31 H 0.175 0.825 32 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.373 -2.958 16.782 18.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.105 3.895 3 H -0.008 1.008 4 C -0.579 4.579 5 H 0.077 0.923 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.192 1.192 12 N -0.317 5.317 13 C -0.040 4.040 14 C -0.132 4.132 15 C -0.117 4.117 16 C -0.055 4.055 17 C -0.223 4.223 18 C -0.242 4.242 19 C -0.111 4.111 20 O -0.093 6.093 21 H 0.046 0.954 22 H 0.042 0.958 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.151 0.849 26 H 0.092 0.908 27 H 0.049 0.951 28 H 0.129 0.871 29 H 0.174 0.826 30 H 0.183 0.817 31 H 0.192 0.808 32 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 6.409 -3.221 16.685 18.162 hybrid contribution 0.943 0.364 -1.053 1.459 sum 7.352 -2.858 15.633 17.510 Atomic orbital electron populations 1.21561 0.97660 0.98904 0.99197 1.18968 0.92835 0.91016 0.86725 1.00798 1.21588 1.31856 1.12770 0.91641 0.92307 1.25735 0.95124 0.95652 1.02042 1.70017 1.37392 1.24011 1.24255 0.85471 0.78851 0.78196 0.78580 1.20146 1.20760 1.19205 1.60634 1.32391 1.33365 1.05307 1.20980 1.00290 0.93439 0.89340 1.23344 0.95957 0.99024 0.94829 1.21082 0.97920 1.00011 0.92667 1.21108 0.97233 0.88674 0.98506 1.22222 0.99586 1.03277 0.97218 1.22136 1.02749 0.96603 1.02712 1.24952 0.93859 1.02672 0.89575 1.84103 1.50373 1.36628 1.38158 0.95402 0.95760 0.92294 0.92757 0.84903 0.90787 0.95116 0.87051 0.82624 0.81730 0.80766 0.74619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.84 9.19 71.98 0.66 -5.17 16 2 C 0.21 11.04 2.60 44.17 0.11 11.16 16 3 H -0.03 -1.44 7.80 -2.39 -0.02 -1.46 16 4 C -0.54 -30.08 8.59 25.60 0.22 -29.86 16 5 H 0.06 3.21 7.62 -2.91 -0.02 3.19 16 6 C 0.01 0.77 5.30 84.66 0.45 1.21 16 7 N -0.92 -53.07 11.32 21.45 0.24 -52.83 16 8 Si 0.96 43.63 29.54 68.60 2.03 45.65 16 9 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 12 N -0.69 -29.88 6.29 -499.46 -3.14 -33.02 16 13 C 0.09 3.18 5.93 85.56 0.51 3.68 16 14 C -0.11 -3.48 9.45 24.52 0.23 -3.24 16 15 C -0.10 -2.65 9.70 23.42 0.23 -2.42 16 16 C -0.01 -0.16 7.00 24.12 0.17 0.01 16 17 C -0.20 -4.52 10.86 22.44 0.24 -4.27 16 18 C -0.22 -4.12 10.88 22.11 0.24 -3.88 16 19 C -0.04 -0.82 12.08 67.03 0.81 -0.01 16 20 O -0.20 -5.22 10.28 -6.92 -0.07 -5.29 16 21 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.02 1.08 7.45 -2.38 -0.02 1.07 16 23 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 24 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 25 H 0.33 14.29 8.22 -89.69 -0.74 13.55 16 26 H 0.07 2.69 7.44 -2.39 -0.02 2.67 16 27 H 0.03 1.09 7.73 -2.39 -0.02 1.07 16 28 H 0.11 3.56 7.76 -2.91 -0.02 3.54 16 29 H 0.16 3.60 7.87 -2.91 -0.02 3.58 16 30 H 0.17 2.93 8.06 -2.91 -0.02 2.90 16 31 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.24 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -63.18 278.91 3.30 -59.88 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.37 Total: 18.41 kcal Atomic # 6 Polarization: -36.68 SS G_CDS: 3.87 Total: -32.80 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -2.90 Total: -85.85 kcal Atomic # 8 Polarization: -5.22 SS G_CDS: -0.07 Total: -5.29 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -63.18 3.30 -59.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308604593.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.782 kcal (2) G-P(sol) polarization free energy of solvation -63.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds