Wall clock time and date at job start Mon Mar 30 2020 02:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31517 * 119.99524 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00267 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46589 * 89.99875 * 8 6 4 10 10 H 1.48490 * 109.47303 * 209.99928 * 8 6 4 11 11 H 1.48497 * 109.46869 * 330.00523 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46897 * 111.00172 * 84.99810 * 12 2 1 14 14 C 1.50697 * 109.46908 * 180.02562 * 13 12 2 15 15 C 1.32987 * 120.00212 * 125.00329 * 14 13 12 16 16 C 1.47066 * 120.00033 * 179.97438 * 15 14 13 17 17 C 1.36232 * 125.95772 * 179.70956 * 16 15 14 18 18 C 1.40829 * 106.72496 * 179.91361 * 17 16 15 19 19 C 1.34786 * 107.06554 * 0.35122 * 18 17 16 20 20 O 1.34306 * 108.71837 * 359.78189 * 19 18 17 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.97001 * 119.99599 * 179.97438 * 7 6 4 25 25 H 1.00896 * 110.99793 * 208.95333 * 12 2 1 26 26 H 1.09005 * 109.47066 * 299.99968 * 13 12 2 27 27 H 1.09001 * 109.47085 * 59.99954 * 13 12 2 28 28 H 1.08005 * 120.00163 * 304.99465 * 14 13 12 29 29 H 1.08000 * 120.00089 * 359.97438 * 15 14 13 30 30 H 1.08003 * 126.63749 * 0.03712 * 17 16 15 31 31 H 1.07997 * 126.46463 * 180.17731 * 18 17 16 32 32 H 1.08005 * 125.64193 * 179.78490 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 2.5874 -0.5216 -3.5560 15 6 1.8757 -0.5258 -4.6795 16 6 2.3688 -1.2517 -5.8596 17 6 1.7394 -1.3409 -7.0645 18 6 2.5638 -2.1242 -7.8953 19 6 3.6397 -2.4780 -7.1646 20 8 3.5189 -1.9496 -5.9358 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.9033 -0.5281 4.4375 25 1 2.9173 -1.1204 -1.0288 26 1 1.0870 0.6164 -2.5525 27 1 2.7588 1.0463 -2.1182 28 1 3.5273 -1.0517 -3.5103 29 1 0.9357 0.0040 -4.7252 30 1 0.7926 -0.8952 -7.3317 31 1 2.3690 -2.3932 -8.9230 32 1 4.4629 -3.0859 -7.5102 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308604604.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:23 Heat of formation + Delta-G solvation = 32.838969 kcal Electronic energy + Delta-G solvation = -14041.272708 eV Core-core repulsion = 11583.061942 eV Total energy + Delta-G solvation = -2458.210767 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.46767 -36.70120 -34.30717 -33.02729 -32.19578 -30.14479 -28.17199 -25.35018 -24.20642 -21.94690 -21.08092 -19.95485 -19.43472 -17.44328 -16.77798 -15.99802 -15.46752 -15.09588 -14.05778 -13.87665 -13.74363 -12.99198 -12.88623 -12.80886 -12.35439 -12.20135 -11.98986 -11.47230 -11.04191 -10.86396 -10.67384 -10.28191 -10.11732 -9.85611 -9.50644 -9.05553 -8.63103 -7.96371 -7.50609 -6.11824 -4.12102 1.16565 2.30450 2.96458 3.05431 3.25700 3.34572 3.37358 4.36630 4.60846 4.92582 4.95767 5.19026 5.22474 5.28960 5.53302 5.70838 5.73429 5.82078 6.00416 6.12235 6.32161 6.36138 6.50081 6.62307 6.64856 6.73104 6.77921 7.15493 7.35831 7.54122 7.88203 8.29011 8.57884 8.92558 9.49941 11.01135 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.068987 B = 0.004621 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.778481 B = 6057.358318 C = 6310.259390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.181 3.819 3 H 0.002 0.998 4 C -0.522 4.522 5 H 0.079 0.921 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.892 3.108 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.675 5.675 13 C 0.078 3.922 14 C -0.093 4.093 15 C -0.115 4.115 16 C 0.036 3.964 17 C -0.212 4.212 18 C -0.213 4.213 19 C -0.048 4.048 20 O -0.174 6.174 21 H 0.037 0.963 22 H 0.058 0.942 23 H 0.025 0.975 24 H 0.265 0.735 25 H 0.341 0.659 26 H 0.073 0.927 27 H 0.039 0.961 28 H 0.114 0.886 29 H 0.142 0.858 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.354 0.968 -19.348 19.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.072 3.928 3 H 0.020 0.980 4 C -0.560 4.560 5 H 0.097 0.903 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.723 3.277 9 H -0.204 1.204 10 H -0.225 1.225 11 H -0.194 1.194 12 N -0.306 5.306 13 C -0.051 4.051 14 C -0.112 4.112 15 C -0.134 4.134 16 C -0.014 4.014 17 C -0.231 4.231 18 C -0.232 4.232 19 C -0.116 4.116 20 O -0.070 6.070 21 H 0.056 0.944 22 H 0.077 0.923 23 H 0.044 0.956 24 H 0.075 0.925 25 H 0.159 0.841 26 H 0.091 0.909 27 H 0.057 0.943 28 H 0.132 0.868 29 H 0.160 0.840 30 H 0.166 0.834 31 H 0.164 0.836 32 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -0.059 0.691 -19.056 19.069 hybrid contribution 0.032 1.196 0.180 1.210 sum -0.027 1.887 -18.876 18.970 Atomic orbital electron populations 1.22075 0.98615 1.01114 0.97733 1.19564 0.91868 0.93008 0.88346 0.98042 1.21101 1.32451 1.13848 0.88586 0.90302 1.24937 0.95679 0.96758 0.95721 1.69894 1.45487 1.40230 0.97947 0.86785 0.80694 0.83491 0.76777 1.20445 1.22500 1.19384 1.60603 1.33123 1.32099 1.04803 1.21107 1.00021 0.93943 0.90030 1.23617 0.98355 0.95539 0.93658 1.20802 1.00688 1.02035 0.89858 1.21019 0.85875 0.98043 0.96468 1.21810 1.02482 1.05586 0.93187 1.21724 0.96171 1.03895 1.01388 1.24060 1.01889 1.03008 0.82642 1.84107 1.37278 1.52919 1.32654 0.94433 0.92269 0.95553 0.92535 0.84052 0.90873 0.94332 0.86784 0.84022 0.83434 0.83579 0.78266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.90 37.16 0.33 -2.74 16 2 C 0.18 4.28 2.19 -68.86 -0.15 4.13 16 3 H 0.00 0.05 6.86 -51.93 -0.36 -0.31 16 4 C -0.52 -14.61 9.17 -34.44 -0.32 -14.92 16 5 H 0.08 2.38 7.86 -52.49 -0.41 1.97 16 6 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 7 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 8 Si 0.89 21.98 24.37 -169.99 -4.14 17.83 16 9 H -0.28 -6.68 6.87 56.52 0.39 -6.29 16 10 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 11 H -0.27 -6.35 6.53 56.52 0.37 -5.98 16 12 N -0.67 -13.74 6.29 -109.22 -0.69 -14.43 16 13 C 0.08 1.29 5.93 -4.98 -0.03 1.26 16 14 C -0.09 -1.35 9.45 -36.13 -0.34 -1.69 16 15 C -0.12 -1.53 9.70 -37.82 -0.37 -1.89 16 16 C 0.04 0.49 7.00 -36.73 -0.26 0.23 16 17 C -0.21 -2.51 10.86 -39.32 -0.43 -2.93 16 18 C -0.21 -2.23 10.88 -39.83 -0.43 -2.66 16 19 C -0.05 -0.51 12.08 29.51 0.36 -0.15 16 20 O -0.17 -2.36 10.28 4.47 0.05 -2.32 16 21 H 0.04 0.86 3.27 -51.93 -0.17 0.69 16 22 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 23 H 0.03 0.50 7.45 -51.93 -0.39 0.12 16 24 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.34 6.93 8.22 -39.29 -0.32 6.61 16 26 H 0.07 1.16 7.11 -51.93 -0.37 0.79 16 27 H 0.04 0.63 8.06 -51.93 -0.42 0.21 16 28 H 0.11 1.65 7.76 -52.48 -0.41 1.24 16 29 H 0.14 1.62 7.87 -52.49 -0.41 1.21 16 30 H 0.15 1.45 8.06 -52.48 -0.42 1.03 16 31 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.20 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 272.10 15.07 4.10 4.10 Total: -1.00 -30.95 272.10 -5.77 -36.73 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -4.13 Total: 4.09 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -1.73 Total: -19.43 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.09 Total: -41.01 kcal Atomic # 8 Polarization: -2.36 SS G_CDS: 0.05 Total: -2.32 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.14 Total: 17.83 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.95 -5.77 -36.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308604604.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.565 kcal (2) G-P(sol) polarization free energy of solvation -30.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds