Wall clock time and date at job start Mon Mar 30 2020 02:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31517 * 119.99524 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00267 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46589 * 89.99875 * 8 6 4 10 10 H 1.48490 * 109.47303 * 209.99928 * 8 6 4 11 11 H 1.48497 * 109.46869 * 330.00523 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46897 * 111.00172 * 84.99810 * 12 2 1 14 14 C 1.50697 * 109.46908 * 180.02562 * 13 12 2 15 15 C 1.32987 * 120.00212 * 125.00329 * 14 13 12 16 16 C 1.47066 * 120.00033 * 179.97438 * 15 14 13 17 17 C 1.36232 * 125.95772 * 179.70956 * 16 15 14 18 18 C 1.40829 * 106.72496 * 179.91361 * 17 16 15 19 19 C 1.34786 * 107.06554 * 0.35122 * 18 17 16 20 20 O 1.34306 * 108.71837 * 359.78189 * 19 18 17 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.97001 * 119.99599 * 179.97438 * 7 6 4 25 25 H 1.00896 * 110.99793 * 208.95333 * 12 2 1 26 26 H 1.09005 * 109.47066 * 299.99968 * 13 12 2 27 27 H 1.09001 * 109.47085 * 59.99954 * 13 12 2 28 28 H 1.08005 * 120.00163 * 304.99465 * 14 13 12 29 29 H 1.08000 * 120.00089 * 359.97438 * 15 14 13 30 30 H 1.08003 * 126.63749 * 0.03712 * 17 16 15 31 31 H 1.07997 * 126.46463 * 180.17731 * 18 17 16 32 32 H 1.08005 * 125.64193 * 179.78490 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 2.5874 -0.5216 -3.5560 15 6 1.8757 -0.5258 -4.6795 16 6 2.3688 -1.2517 -5.8596 17 6 1.7394 -1.3409 -7.0645 18 6 2.5638 -2.1242 -7.8953 19 6 3.6397 -2.4780 -7.1646 20 8 3.5189 -1.9496 -5.9358 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.9033 -0.5281 4.4375 25 1 2.9173 -1.1204 -1.0288 26 1 1.0870 0.6164 -2.5525 27 1 2.7588 1.0463 -2.1182 28 1 3.5273 -1.0517 -3.5103 29 1 0.9357 0.0040 -4.7252 30 1 0.7926 -0.8952 -7.3317 31 1 2.3690 -2.3932 -8.9230 32 1 4.4629 -3.0859 -7.5102 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308604604.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:22 Heat of formation + Delta-G solvation = 11.368966 kcal Electronic energy + Delta-G solvation = -14042.203717 eV Core-core repulsion = 11583.061942 eV Total energy + Delta-G solvation = -2459.141776 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.35781 -38.26567 -35.72992 -34.18111 -33.83194 -31.64653 -29.38121 -27.24629 -25.63923 -22.85310 -22.15269 -21.71375 -20.49531 -18.83180 -18.35994 -17.22479 -16.93275 -16.19004 -15.69762 -15.47872 -15.20305 -14.64310 -14.02308 -13.89389 -13.73160 -13.41737 -13.38185 -12.93841 -12.80236 -12.55542 -12.13511 -12.07171 -11.47272 -11.31042 -11.06560 -10.78232 -10.72396 -9.24723 -8.79743 -8.32179 -6.37568 0.18211 1.31854 1.36005 1.45261 1.47057 2.07003 2.14652 2.30931 3.03074 3.50641 3.81185 4.08253 4.17211 4.23838 4.45527 4.49232 4.59921 4.71459 4.74456 4.86793 4.89136 4.99714 5.01674 5.23579 5.42198 5.49412 5.56673 5.63686 5.71684 5.97069 6.25606 6.47337 6.61927 6.78976 7.29196 8.84417 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.068987 B = 0.004621 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.778481 B = 6057.358318 C = 6310.259390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.184 3.816 3 H 0.001 0.999 4 C -0.529 4.529 5 H 0.038 0.962 6 C 0.013 3.987 7 N -0.947 5.947 8 Si 0.956 3.044 9 H -0.265 1.265 10 H -0.298 1.298 11 H -0.248 1.248 12 N -0.681 5.681 13 C 0.085 3.915 14 C -0.118 4.118 15 C -0.092 4.092 16 C -0.007 4.007 17 C -0.204 4.204 18 C -0.223 4.223 19 C -0.046 4.046 20 O -0.198 6.198 21 H 0.032 0.968 22 H 0.049 0.951 23 H 0.060 0.940 24 H 0.267 0.733 25 H 0.336 0.664 26 H 0.086 0.914 27 H 0.039 0.961 28 H 0.105 0.895 29 H 0.162 0.838 30 H 0.167 0.833 31 H 0.174 0.826 32 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.954 2.088 -21.873 21.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.074 3.926 3 H 0.019 0.981 4 C -0.567 4.567 5 H 0.056 0.944 6 C -0.185 4.185 7 N -0.587 5.587 8 Si 0.782 3.218 9 H -0.191 1.191 10 H -0.225 1.225 11 H -0.172 1.172 12 N -0.312 5.312 13 C -0.044 4.044 14 C -0.137 4.137 15 C -0.111 4.111 16 C -0.056 4.056 17 C -0.223 4.223 18 C -0.242 4.242 19 C -0.113 4.113 20 O -0.095 6.095 21 H 0.051 0.949 22 H 0.068 0.932 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.153 0.847 26 H 0.104 0.896 27 H 0.057 0.943 28 H 0.123 0.877 29 H 0.180 0.820 30 H 0.185 0.815 31 H 0.192 0.808 32 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -1.371 1.812 -21.616 21.736 hybrid contribution 0.522 0.713 0.775 1.175 sum -0.849 2.525 -20.842 21.011 Atomic orbital electron populations 1.21990 0.97054 1.01038 0.99146 1.19428 0.93041 0.92327 0.87767 0.98140 1.21419 1.31646 1.12779 0.90875 0.94367 1.25843 0.97219 1.00197 0.95226 1.70045 1.47505 1.42475 0.98661 0.85745 0.79111 0.79596 0.77298 1.19067 1.22532 1.17188 1.60570 1.32957 1.32943 1.04749 1.21095 1.00867 0.93399 0.89022 1.23306 0.98996 0.97683 0.93717 1.21050 1.00546 1.00212 0.89259 1.21209 0.86909 1.00150 0.97366 1.22227 1.02921 1.04497 0.92631 1.22141 0.95808 1.03607 1.02643 1.24926 1.02829 1.02016 0.81541 1.84098 1.37667 1.53453 1.34248 0.94915 0.93192 0.92083 0.92386 0.84675 0.89596 0.94300 0.87664 0.82024 0.81544 0.80826 0.74810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.70 8.90 71.98 0.64 -5.06 16 2 C 0.18 8.57 2.19 44.17 0.10 8.66 16 3 H 0.00 0.05 6.86 -2.39 -0.02 0.03 16 4 C -0.53 -30.33 9.17 25.60 0.23 -30.09 16 5 H 0.04 2.43 7.86 -2.91 -0.02 2.40 16 6 C 0.01 0.75 5.45 84.65 0.46 1.21 16 7 N -0.95 -59.32 13.96 21.45 0.30 -59.02 16 8 Si 0.96 44.77 24.37 68.60 1.67 46.44 16 9 H -0.26 -11.80 6.87 99.48 0.68 -11.11 16 10 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 11 H -0.25 -10.71 6.53 99.48 0.65 -10.06 16 12 N -0.68 -27.64 6.29 -499.47 -3.14 -30.78 16 13 C 0.08 2.68 5.93 85.56 0.51 3.19 16 14 C -0.12 -3.37 9.45 24.52 0.23 -3.13 16 15 C -0.09 -2.30 9.70 23.42 0.23 -2.07 16 16 C -0.01 -0.18 7.00 24.12 0.17 -0.01 16 17 C -0.20 -4.31 10.86 22.44 0.24 -4.07 16 18 C -0.22 -4.02 10.88 22.11 0.24 -3.77 16 19 C -0.05 -0.86 12.08 67.03 0.81 -0.05 16 20 O -0.20 -5.17 10.28 -6.92 -0.07 -5.25 16 21 H 0.03 1.40 3.27 -2.39 -0.01 1.40 16 22 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 23 H 0.06 2.14 7.45 -2.38 -0.02 2.12 16 24 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 25 H 0.34 14.08 8.22 -89.70 -0.74 13.34 16 26 H 0.09 2.48 7.11 -2.38 -0.02 2.46 16 27 H 0.04 1.23 8.06 -2.39 -0.02 1.21 16 28 H 0.11 3.13 7.76 -2.91 -0.02 3.10 16 29 H 0.16 3.24 7.87 -2.91 -0.02 3.22 16 30 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 31 H 0.17 2.05 8.06 -2.91 -0.02 2.02 16 32 H 0.24 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -67.72 272.10 2.92 -64.81 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.30 Total: 19.01 kcal Atomic # 6 Polarization: -39.06 SS G_CDS: 3.86 Total: -35.20 kcal Atomic # 7 Polarization: -86.97 SS G_CDS: -2.84 Total: -89.81 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.07 Total: -5.25 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.67 Total: 46.44 kcal Total: -67.72 2.92 -64.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308604604.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.177 kcal (2) G-P(sol) polarization free energy of solvation -67.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds