Wall clock time and date at job start Mon Mar 30 2020 02:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.46947 * 2 1 4 4 C 1.50700 * 109.46918 * 239.99183 * 2 1 3 5 5 H 1.08000 * 120.00454 * 275.00285 * 4 2 1 6 6 C 1.37882 * 119.99554 * 95.00579 * 4 2 1 7 7 N 1.31508 * 119.99859 * 184.90994 * 6 4 2 8 8 Si 1.86797 * 119.99943 * 4.91211 * 6 4 2 9 9 H 1.48502 * 109.47550 * 84.83262 * 8 6 4 10 10 H 1.48504 * 109.46719 * 204.82988 * 8 6 4 11 11 H 1.48499 * 109.47086 * 324.82625 * 8 6 4 12 12 N 1.46901 * 109.46915 * 119.99531 * 2 1 3 13 13 C 1.46901 * 111.00178 * 275.00138 * 12 2 1 14 14 C 1.50698 * 109.47104 * 180.02562 * 13 12 2 15 15 C 1.38287 * 119.97102 * 269.97211 * 14 13 12 16 16 C 1.38249 * 120.10800 * 180.02562 * 15 14 13 17 17 C 1.38163 * 120.05661 * 359.68115 * 16 15 14 18 18 C 1.38707 * 119.94324 * 0.61908 * 17 16 15 19 19 O 1.35901 * 120.05905 * 179.67446 * 18 17 16 20 20 C 1.38118 * 119.97024 * 89.99884 * 14 13 12 21 21 H 1.08993 * 109.47072 * 295.05662 * 1 2 3 22 22 H 1.09004 * 109.46650 * 55.05930 * 1 2 3 23 23 H 1.09000 * 109.46962 * 175.05601 * 1 2 3 24 24 H 0.97002 * 120.00371 * 179.97438 * 7 6 4 25 25 H 1.00904 * 110.99798 * 151.04329 * 12 2 1 26 26 H 1.09002 * 109.46959 * 59.99948 * 13 12 2 27 27 H 1.08997 * 109.46814 * 300.00281 * 13 12 2 28 28 H 1.07995 * 119.94387 * 0.02562 * 15 14 13 29 29 H 1.08002 * 119.96790 * 179.97438 * 16 15 14 30 30 H 1.08003 * 120.02753 * 180.29494 * 17 16 15 31 31 H 0.96700 * 113.99950 * 269.73359 * 19 18 17 32 32 H 1.07999 * 120.03008 * 359.97438 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.1355 -1.7857 -1.2289 6 6 2.3603 0.0119 -2.3580 7 7 2.7061 -0.6134 -3.4621 8 14 2.3137 1.8788 -2.3175 9 1 3.5992 2.3947 -1.7822 10 1 2.1060 2.3987 -3.6930 11 1 1.1986 2.3273 -1.4453 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5885 -0.5213 3.5558 15 6 1.6954 -1.1516 4.4029 16 6 2.1565 -1.8345 5.5130 17 6 3.5117 -1.8944 5.7750 18 6 4.4090 -1.2578 4.9304 19 8 5.7421 -1.3096 5.1896 20 6 3.9437 -0.5726 3.8170 21 1 -0.3633 0.4352 0.9309 22 1 -0.3633 0.5886 -0.8425 23 1 -0.3633 -1.0238 -0.0886 24 1 2.9365 -0.1052 -4.2555 25 1 2.9173 -1.1205 1.0288 26 1 1.0870 0.6165 2.5525 27 1 2.7588 1.0463 2.1182 28 1 0.6361 -1.1103 4.1968 29 1 1.4569 -2.3256 6.1732 30 1 3.8717 -2.4321 6.6398 31 1 6.0629 -0.5867 5.7460 32 1 4.6408 -0.0802 3.1552 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308669642.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:10 Heat of formation + Delta-G solvation = -47.933879 kcal Electronic energy + Delta-G solvation = -14440.826489 eV Core-core repulsion = 11979.113149 eV Total energy + Delta-G solvation = -2461.713340 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.68623 -38.30846 -37.19024 -34.63235 -32.90479 -30.85704 -30.06799 -27.38615 -25.86985 -23.46992 -22.28182 -21.54327 -19.37520 -18.75372 -17.29108 -17.07548 -16.64389 -16.07473 -15.71829 -15.38997 -14.92527 -14.59911 -14.42347 -13.85701 -13.43059 -13.07728 -12.98568 -12.87679 -12.60878 -12.47326 -12.31689 -12.12366 -11.82846 -11.33897 -11.06146 -10.77972 -9.82781 -9.50865 -9.11044 -8.33224 -6.39252 0.33990 0.39864 1.30728 1.32546 1.43637 2.30038 2.70471 3.01259 3.28313 3.70922 3.90295 3.99885 4.23350 4.38874 4.45805 4.55792 4.65106 4.73234 4.88374 4.99203 5.01026 5.08848 5.11227 5.45122 5.49350 5.51579 5.67633 5.72647 5.94797 6.01538 6.49226 6.65286 6.79025 6.87893 7.29860 8.83660 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038355 B = 0.006417 C = 0.006005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.853026 B = 4362.304422 C = 4661.953453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.181 3.819 3 H 0.006 0.994 4 C -0.524 4.524 5 H 0.034 0.966 6 C 0.015 3.985 7 N -0.944 5.944 8 Si 0.942 3.058 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.244 1.244 12 N -0.681 5.681 13 C 0.094 3.906 14 C -0.068 4.068 15 C -0.118 4.118 16 C -0.101 4.101 17 C -0.152 4.152 18 C 0.096 3.904 19 O -0.511 6.511 20 C -0.158 4.158 21 H 0.053 0.947 22 H 0.038 0.962 23 H 0.041 0.959 24 H 0.267 0.733 25 H 0.333 0.667 26 H 0.086 0.914 27 H 0.028 0.972 28 H 0.134 0.866 29 H 0.155 0.845 30 H 0.147 0.853 31 H 0.408 0.592 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.145 3.642 19.920 20.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.073 3.927 3 H 0.024 0.976 4 C -0.562 4.562 5 H 0.052 0.948 6 C -0.183 4.183 7 N -0.584 5.584 8 Si 0.766 3.234 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.168 1.168 12 N -0.312 5.312 13 C -0.035 4.035 14 C -0.069 4.069 15 C -0.136 4.136 16 C -0.119 4.119 17 C -0.171 4.171 18 C 0.051 3.949 19 O -0.324 6.324 20 C -0.177 4.177 21 H 0.072 0.928 22 H 0.057 0.943 23 H 0.061 0.939 24 H 0.076 0.924 25 H 0.150 0.850 26 H 0.104 0.896 27 H 0.046 0.954 28 H 0.152 0.848 29 H 0.173 0.827 30 H 0.165 0.835 31 H 0.267 0.733 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.450 2.929 19.555 19.778 hybrid contribution 1.129 1.433 -0.751 1.973 sum 0.679 4.363 18.804 19.315 Atomic orbital electron populations 1.21746 0.96395 1.00456 0.99296 1.19500 0.93701 0.91984 0.87554 0.97635 1.21294 1.43551 0.94186 0.97199 0.94760 1.25915 0.94024 1.03640 0.94710 1.70050 1.47705 1.38047 1.02611 0.85813 0.79877 0.79928 0.77768 1.19507 1.21010 1.16782 1.60709 1.32809 1.32917 1.04753 1.21003 1.00701 0.92997 0.88786 1.19776 0.92996 0.98327 0.95791 1.21277 1.00332 0.97398 0.94596 1.21350 0.95404 0.97992 0.97145 1.21646 0.93328 1.01490 1.00616 1.18544 0.83566 0.98072 0.94690 1.84783 1.19590 1.53974 1.74097 1.21427 0.95597 1.01735 0.98967 0.92843 0.94335 0.93941 0.92374 0.84961 0.89580 0.95423 0.84778 0.82725 0.83487 0.73306 0.86419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 9.42 71.98 0.68 -4.39 16 2 C 0.18 8.45 2.26 44.17 0.10 8.55 16 3 H 0.01 0.28 4.95 -2.39 -0.01 0.27 16 4 C -0.52 -30.00 8.84 25.60 0.23 -29.78 16 5 H 0.03 2.22 8.06 -2.91 -0.02 2.19 16 6 C 0.02 0.89 5.47 84.66 0.46 1.35 16 7 N -0.94 -58.96 13.96 21.45 0.30 -58.66 16 8 Si 0.94 43.82 26.99 68.60 1.85 45.67 16 9 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.24 -10.47 6.82 99.48 0.68 -9.79 16 12 N -0.68 -28.16 6.29 -499.45 -3.14 -31.30 16 13 C 0.09 3.10 5.61 85.56 0.48 3.58 16 14 C -0.07 -2.01 5.39 -19.88 -0.11 -2.11 16 15 C -0.12 -2.96 9.70 22.28 0.22 -2.74 16 16 C -0.10 -2.10 10.04 22.25 0.22 -1.88 16 17 C -0.15 -3.26 9.99 22.36 0.22 -3.04 16 18 C 0.10 2.40 6.71 22.51 0.15 2.55 16 19 O -0.51 -11.38 13.50 -92.44 -1.25 -12.63 16 20 C -0.16 -4.54 9.64 22.37 0.22 -4.32 16 21 H 0.05 1.88 7.35 -2.39 -0.02 1.86 16 22 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 25 H 0.33 14.70 8.34 -89.69 -0.75 13.95 16 26 H 0.09 2.62 7.31 -2.39 -0.02 2.60 16 27 H 0.03 0.92 8.00 -2.39 -0.02 0.90 16 28 H 0.13 3.08 8.06 -2.91 -0.02 3.05 16 29 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 30 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 31 H 0.41 4.67 9.06 -74.06 -0.67 4.00 16 32 H 0.12 3.44 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -67.95 274.73 0.31 -67.64 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: -0.32 Total: 21.50 kcal Atomic # 6 Polarization: -35.09 SS G_CDS: 2.87 Total: -32.22 kcal Atomic # 7 Polarization: -87.11 SS G_CDS: -2.84 Total: -89.95 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -1.25 Total: -12.63 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.85 Total: 45.67 kcal Total: -67.95 0.31 -67.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308669642.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.707 kcal (2) G-P(sol) polarization free energy of solvation -67.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds