Wall clock time and date at job start Mon Mar 30 2020 02:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 N 1.46300 * 114.00106 * 2 1 4 4 C 1.46905 * 111.00252 * 243.95630 * 3 2 1 5 5 C 1.46900 * 110.99966 * 120.00328 * 3 2 1 6 6 H 1.08998 * 109.47290 * 59.81496 * 5 3 2 7 7 C 1.50699 * 109.47251 * 179.81669 * 5 3 2 8 8 H 1.08002 * 119.99974 * 54.66868 * 7 5 3 9 9 C 1.37873 * 120.00022 * 234.67969 * 7 5 3 10 10 N 1.31517 * 120.00165 * 173.48277 * 9 7 5 11 11 Si 1.86800 * 119.99912 * 353.47694 * 9 7 5 12 12 H 1.48504 * 109.47193 * 93.13251 * 11 9 7 13 13 H 1.48509 * 109.47325 * 213.13151 * 11 9 7 14 14 H 1.48500 * 109.47303 * 333.12915 * 11 9 7 15 15 C 1.50706 * 109.47027 * 299.81433 * 5 3 2 16 16 C 1.38234 * 119.99826 * 312.28668 * 15 5 3 17 17 C 1.38238 * 120.00101 * 179.81220 * 16 15 5 18 18 C 1.38237 * 119.99393 * 0.39564 * 17 16 15 19 19 C 1.38236 * 120.00344 * 359.85547 * 18 17 16 20 20 C 1.38227 * 120.00011 * 132.55815 * 15 5 3 21 21 H 1.09000 * 109.47114 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47361 * 299.99711 * 1 2 3 23 23 H 1.08999 * 109.47566 * 59.99922 * 1 2 3 24 24 H 1.09000 * 109.46412 * 300.04989 * 4 3 2 25 25 H 1.09000 * 109.46702 * 60.04282 * 4 3 2 26 26 H 1.08995 * 109.47068 * 180.02562 * 4 3 2 27 27 H 0.96999 * 119.99857 * 179.97438 * 10 9 7 28 28 H 1.08005 * 120.00002 * 359.97438 * 16 15 5 29 29 H 1.07989 * 120.00062 * 180.22667 * 17 16 15 30 30 H 1.08009 * 119.99558 * 179.84004 * 18 17 16 31 31 H 1.07994 * 119.99988 * 179.97438 * 19 18 17 32 32 H 1.08005 * 120.00316 * 359.97438 * 20 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0240 1.3365 0.0000 4 6 2.7882 1.5726 -1.2322 5 6 2.8646 1.5385 1.1877 6 1 3.6637 0.7972 1.1976 7 6 3.4626 2.9212 1.1506 8 1 2.8214 3.7844 1.0496 9 6 4.8284 3.0844 1.2454 10 7 5.3610 4.2762 1.0849 11 14 5.9223 1.6129 1.6020 12 1 6.3978 1.0279 0.3225 13 1 7.0891 2.0479 2.4112 14 1 5.1499 0.5929 2.3559 15 6 2.0242 1.3878 2.4295 16 6 0.8087 2.0392 2.5246 17 6 0.0359 1.8980 3.6621 18 6 0.4825 1.1117 4.7077 19 6 1.7004 0.4645 4.6147 20 6 2.4713 0.6027 3.4756 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 3.5859 0.8340 -1.3120 25 1 2.1253 1.4858 -2.0931 26 1 3.2201 2.5730 -1.2058 27 1 6.3218 4.3910 1.1520 28 1 0.4615 2.6565 1.7092 29 1 -0.9153 2.4039 3.7349 30 1 -0.1201 1.0034 5.5975 31 1 2.0495 -0.1494 5.4318 32 1 3.4228 0.0969 3.4029 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379624262.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:58 Heat of formation + Delta-G solvation = 30.833640 kcal Electronic energy + Delta-G solvation = -15412.629746 eV Core-core repulsion = 12954.332022 eV Total energy + Delta-G solvation = -2458.297724 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.63860 -36.38376 -34.09494 -32.02660 -30.59701 -30.17021 -27.00043 -25.91038 -24.04995 -22.09760 -21.59634 -19.64827 -17.25697 -16.32610 -15.58566 -15.11714 -14.67237 -14.40835 -14.04149 -13.61754 -13.00943 -12.78714 -12.75429 -12.30379 -12.03772 -11.87615 -11.63603 -11.33692 -11.03980 -10.61230 -10.45511 -10.01630 -9.93274 -9.65899 -9.26881 -8.78164 -8.18239 -7.84090 -7.67093 -6.33893 -4.34273 2.12712 2.17061 3.13656 3.23719 3.25307 3.54940 4.20302 4.58761 5.06685 5.49996 5.54528 5.62429 5.79276 5.99853 6.00564 6.09925 6.21068 6.22717 6.31911 6.35269 6.40880 6.60460 6.77019 6.82474 6.89266 7.16129 7.20034 7.25179 7.48603 7.74907 7.78583 7.95088 8.35181 8.76449 9.26824 10.76663 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022370 B = 0.013649 C = 0.010394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.399216 B = 2050.951993 C = 2693.175469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.292 6.292 3 N -0.354 5.354 4 C 0.022 3.978 5 C 0.197 3.803 6 H 0.028 0.972 7 C -0.498 4.498 8 H 0.087 0.913 9 C 0.083 3.917 10 N -0.877 5.877 11 Si 0.866 3.134 12 H -0.274 1.274 13 H -0.282 1.282 14 H -0.258 1.258 15 C -0.021 4.021 16 C -0.096 4.096 17 C -0.130 4.130 18 C -0.148 4.148 19 C -0.125 4.125 20 C -0.131 4.131 21 H 0.069 0.931 22 H 0.042 0.958 23 H 0.032 0.968 24 H 0.021 0.979 25 H 0.053 0.947 26 H 0.105 0.895 27 H 0.270 0.730 28 H 0.121 0.879 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.980 -6.440 1.646 9.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.293 6.293 3 N -0.126 5.126 4 C -0.126 4.126 5 C 0.092 3.908 6 H 0.046 0.954 7 C -0.536 4.536 8 H 0.105 0.895 9 C -0.123 4.123 10 N -0.513 5.513 11 Si 0.693 3.307 12 H -0.200 1.200 13 H -0.208 1.208 14 H -0.183 1.183 15 C -0.022 4.022 16 C -0.115 4.115 17 C -0.148 4.148 18 C -0.166 4.166 19 C -0.143 4.143 20 C -0.149 4.149 21 H 0.088 0.912 22 H 0.061 0.939 23 H 0.051 0.949 24 H 0.040 0.960 25 H 0.072 0.928 26 H 0.124 0.876 27 H 0.080 0.920 28 H 0.139 0.861 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.089 -6.220 1.644 9.573 hybrid contribution 1.267 -1.086 0.229 1.684 sum -5.823 -7.306 1.873 9.528 Atomic orbital electron populations 1.22433 0.82493 1.00075 0.99949 1.90588 1.19321 1.22561 1.96787 1.68192 1.36019 1.04421 1.04007 1.22488 0.96139 1.02963 0.91050 1.19146 0.89556 0.97753 0.84382 0.95382 1.20655 0.92102 0.89898 1.50957 0.89480 1.25033 0.97679 0.95841 0.93747 1.69873 1.12340 1.22189 1.46875 0.87012 0.80613 0.83622 0.79433 1.19974 1.20785 1.18315 1.20147 0.93559 0.92245 0.96219 1.20908 0.94293 0.98993 0.97262 1.21040 0.99649 0.99727 0.94359 1.20857 0.96956 1.00088 0.98684 1.20919 0.95273 1.00562 0.97587 1.21054 0.99733 0.99927 0.94227 0.91235 0.93902 0.94889 0.96019 0.92808 0.87650 0.92021 0.86113 0.87183 0.87384 0.87285 0.87118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.81 11.51 101.05 1.16 1.98 16 2 O -0.29 -6.14 10.49 -13.92 -0.15 -6.29 16 3 N -0.35 -7.82 4.43 -116.49 -0.52 -8.34 16 4 C 0.02 0.45 9.88 60.07 0.59 1.05 16 5 C 0.20 4.72 1.89 -70.01 -0.13 4.59 16 6 H 0.03 0.71 4.47 -51.93 -0.23 0.48 16 7 C -0.50 -13.21 7.25 -34.44 -0.25 -13.46 16 8 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 9 C 0.08 2.24 5.47 -17.82 -0.10 2.15 16 10 N -0.88 -25.04 13.96 55.43 0.77 -24.27 16 11 Si 0.87 20.64 27.16 -169.99 -4.62 16.02 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.26 -5.97 5.31 56.52 0.30 -5.67 16 15 C -0.02 -0.46 4.43 -104.62 -0.46 -0.92 16 16 C -0.10 -1.95 7.64 -39.58 -0.30 -2.25 16 17 C -0.13 -2.26 10.05 -39.58 -0.40 -2.66 16 18 C -0.15 -2.46 10.05 -39.58 -0.40 -2.86 16 19 C -0.13 -2.24 10.05 -39.58 -0.40 -2.63 16 20 C -0.13 -2.73 9.67 -39.59 -0.38 -3.11 16 21 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 22 H 0.04 0.73 6.45 -51.93 -0.33 0.39 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.11 2.32 6.82 -51.93 -0.35 1.97 16 27 H 0.27 7.22 8.31 -40.82 -0.34 6.89 16 28 H 0.12 2.46 7.96 -52.48 -0.42 2.05 16 29 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 31 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.11 2.31 6.78 -52.48 -0.36 1.95 16 LS Contribution 269.02 15.07 4.05 4.05 Total: -1.00 -28.64 269.02 -5.83 -34.47 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -4.31 Total: 2.50 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: -1.07 Total: -18.15 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.26 Total: -32.61 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.15 Total: -6.29 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.62 Total: 16.02 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.64 -5.83 -34.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379624262.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.305 kcal (2) G-P(sol) polarization free energy of solvation -28.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds