Wall clock time and date at job start Mon Mar 30 2020 02:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 N 1.46300 * 114.00106 * 2 1 4 4 C 1.46905 * 111.00252 * 243.95630 * 3 2 1 5 5 C 1.46900 * 110.99966 * 120.00328 * 3 2 1 6 6 H 1.08998 * 109.47290 * 59.81496 * 5 3 2 7 7 C 1.50699 * 109.47251 * 179.81669 * 5 3 2 8 8 H 1.08002 * 119.99974 * 54.66868 * 7 5 3 9 9 C 1.37873 * 120.00022 * 234.67969 * 7 5 3 10 10 N 1.31517 * 120.00165 * 173.48277 * 9 7 5 11 11 Si 1.86800 * 119.99912 * 353.47694 * 9 7 5 12 12 H 1.48504 * 109.47193 * 93.13251 * 11 9 7 13 13 H 1.48509 * 109.47325 * 213.13151 * 11 9 7 14 14 H 1.48500 * 109.47303 * 333.12915 * 11 9 7 15 15 C 1.50706 * 109.47027 * 299.81433 * 5 3 2 16 16 C 1.38234 * 119.99826 * 312.28668 * 15 5 3 17 17 C 1.38238 * 120.00101 * 179.81220 * 16 15 5 18 18 C 1.38237 * 119.99393 * 0.39564 * 17 16 15 19 19 C 1.38236 * 120.00344 * 359.85547 * 18 17 16 20 20 C 1.38227 * 120.00011 * 132.55815 * 15 5 3 21 21 H 1.09000 * 109.47114 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47361 * 299.99711 * 1 2 3 23 23 H 1.08999 * 109.47566 * 59.99922 * 1 2 3 24 24 H 1.09000 * 109.46412 * 300.04989 * 4 3 2 25 25 H 1.09000 * 109.46702 * 60.04282 * 4 3 2 26 26 H 1.08995 * 109.47068 * 180.02562 * 4 3 2 27 27 H 0.96999 * 119.99857 * 179.97438 * 10 9 7 28 28 H 1.08005 * 120.00002 * 359.97438 * 16 15 5 29 29 H 1.07989 * 120.00062 * 180.22667 * 17 16 15 30 30 H 1.08009 * 119.99558 * 179.84004 * 18 17 16 31 31 H 1.07994 * 119.99988 * 179.97438 * 19 18 17 32 32 H 1.08005 * 120.00316 * 359.97438 * 20 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0240 1.3365 0.0000 4 6 2.7882 1.5726 -1.2322 5 6 2.8646 1.5385 1.1877 6 1 3.6637 0.7972 1.1976 7 6 3.4626 2.9212 1.1506 8 1 2.8214 3.7844 1.0496 9 6 4.8284 3.0844 1.2454 10 7 5.3610 4.2762 1.0849 11 14 5.9223 1.6129 1.6020 12 1 6.3978 1.0279 0.3225 13 1 7.0891 2.0479 2.4112 14 1 5.1499 0.5929 2.3559 15 6 2.0242 1.3878 2.4295 16 6 0.8087 2.0392 2.5246 17 6 0.0359 1.8980 3.6621 18 6 0.4825 1.1117 4.7077 19 6 1.7004 0.4645 4.6147 20 6 2.4713 0.6027 3.4756 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 3.5859 0.8340 -1.3120 25 1 2.1253 1.4858 -2.0931 26 1 3.2201 2.5730 -1.2058 27 1 6.3218 4.3910 1.1520 28 1 0.4615 2.6565 1.7092 29 1 -0.9153 2.4039 3.7349 30 1 -0.1201 1.0034 5.5975 31 1 2.0495 -0.1494 5.4318 32 1 3.4228 0.0969 3.4029 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379624262.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:58 Heat of formation + Delta-G solvation = 13.104272 kcal Electronic energy + Delta-G solvation = -15413.398549 eV Core-core repulsion = 12954.332022 eV Total energy + Delta-G solvation = -2459.066527 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.16850 -38.00692 -35.85071 -33.97584 -32.15836 -31.62238 -28.80830 -27.39928 -25.81193 -23.66405 -23.10739 -21.35338 -19.23700 -17.88446 -17.24167 -16.86587 -16.21487 -16.08410 -15.56333 -15.16871 -14.84755 -14.34790 -14.27552 -13.97864 -13.63463 -13.50572 -13.17850 -12.97425 -12.90571 -12.18659 -12.06872 -11.85758 -11.59850 -11.53122 -10.88495 -10.74071 -9.64208 -9.43070 -9.35916 -8.42514 -6.45918 0.65577 0.70457 1.23470 1.27931 1.36204 1.91902 2.21641 2.97938 3.14192 3.92387 4.15429 4.28348 4.41447 4.48443 4.50335 4.64662 4.70017 4.75592 4.83443 4.90010 4.92425 4.98938 5.16755 5.23459 5.34636 5.37155 5.72831 5.75593 5.85274 6.00803 6.14024 6.33438 6.49581 6.60875 7.18096 8.72083 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022370 B = 0.013649 C = 0.010394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.399216 B = 2050.951993 C = 2693.175469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.301 6.301 3 N -0.360 5.360 4 C 0.025 3.975 5 C 0.203 3.797 6 H 0.014 0.986 7 C -0.492 4.492 8 H 0.048 0.952 9 C 0.037 3.963 10 N -0.922 5.922 11 Si 0.918 3.082 12 H -0.269 1.269 13 H -0.277 1.277 14 H -0.249 1.249 15 C -0.052 4.052 16 C -0.111 4.111 17 C -0.125 4.125 18 C -0.137 4.137 19 C -0.122 4.122 20 C -0.154 4.154 21 H 0.101 0.899 22 H 0.038 0.962 23 H 0.044 0.956 24 H 0.018 0.982 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.272 0.728 28 H 0.107 0.893 29 H 0.143 0.857 30 H 0.151 0.849 31 H 0.142 0.858 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.582 -8.307 3.067 12.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.303 6.303 3 N -0.131 5.131 4 C -0.124 4.124 5 C 0.097 3.903 6 H 0.031 0.969 7 C -0.531 4.531 8 H 0.067 0.933 9 C -0.164 4.164 10 N -0.560 5.560 11 Si 0.742 3.258 12 H -0.194 1.194 13 H -0.202 1.202 14 H -0.173 1.173 15 C -0.053 4.053 16 C -0.129 4.129 17 C -0.143 4.143 18 C -0.154 4.154 19 C -0.140 4.140 20 C -0.172 4.172 21 H 0.119 0.881 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.037 0.963 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.081 0.919 28 H 0.126 0.874 29 H 0.160 0.840 30 H 0.168 0.832 31 H 0.159 0.841 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.704 -8.086 3.061 12.268 hybrid contribution 1.556 -0.536 -0.200 1.658 sum -7.148 -8.622 2.862 11.559 Atomic orbital electron populations 1.22693 0.80211 1.02228 1.00320 1.90556 1.21795 1.21079 1.96901 1.68041 1.35643 1.05716 1.03683 1.22470 0.96638 1.01516 0.91757 1.18946 0.89874 0.95327 0.86169 0.96875 1.20622 0.91790 0.90389 1.50292 0.93331 1.25664 0.98911 0.98062 0.93790 1.69980 1.12763 1.24150 1.49140 0.86182 0.79044 0.80932 0.79602 1.19391 1.20248 1.17348 1.20094 0.94726 0.94586 0.95930 1.20897 0.94380 0.99243 0.98409 1.21409 1.00331 0.99285 0.93249 1.21352 0.96539 0.98041 0.99505 1.21299 0.95204 1.00365 0.97149 1.21163 1.00197 1.00586 0.95294 0.88062 0.94289 0.93752 0.96317 0.89937 0.89861 0.91857 0.87442 0.83955 0.83171 0.84067 0.87986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.34 11.51 113.37 1.30 2.64 16 2 O -0.30 -12.30 10.49 -50.16 -0.53 -12.82 16 3 N -0.36 -16.01 4.43 -522.46 -2.32 -18.33 16 4 C 0.02 1.02 9.88 127.69 1.26 2.28 16 5 C 0.20 9.90 1.89 43.42 0.08 9.98 16 6 H 0.01 0.68 4.47 -2.39 -0.01 0.67 16 7 C -0.49 -27.22 7.25 25.60 0.19 -27.03 16 8 H 0.05 2.99 8.06 -2.91 -0.02 2.97 16 9 C 0.04 2.08 5.47 84.65 0.46 2.54 16 10 N -0.92 -54.69 13.96 21.45 0.30 -54.39 16 11 Si 0.92 43.27 27.16 68.60 1.86 45.14 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 13 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 14 H -0.25 -11.29 5.31 99.48 0.53 -10.76 16 15 C -0.05 -2.33 4.43 -19.87 -0.09 -2.41 16 16 C -0.11 -4.41 7.64 22.27 0.17 -4.24 16 17 C -0.12 -3.97 10.05 22.27 0.22 -3.74 16 18 C -0.14 -3.94 10.05 22.27 0.22 -3.72 16 19 C -0.12 -3.94 10.05 22.27 0.22 -3.72 16 20 C -0.15 -6.23 9.67 22.27 0.22 -6.01 16 21 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 22 H 0.04 1.25 6.45 -2.39 -0.02 1.24 16 23 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 26 H 0.08 3.83 6.82 -2.39 -0.02 3.81 16 27 H 0.27 15.08 8.31 -92.71 -0.77 14.30 16 28 H 0.11 4.45 7.96 -2.91 -0.02 4.43 16 29 H 0.14 3.55 8.06 -2.92 -0.02 3.53 16 30 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 31 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 32 H 0.10 4.19 6.78 -2.91 -0.02 4.17 16 Total: -1.00 -63.51 269.02 4.50 -59.02 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.91 Total: 14.83 kcal Atomic # 6 Polarization: -37.70 SS G_CDS: 4.26 Total: -33.44 kcal Atomic # 7 Polarization: -70.71 SS G_CDS: -2.02 Total: -72.72 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -0.53 Total: -12.82 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.86 Total: 45.14 kcal Total: -63.51 4.50 -59.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379624262.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.120 kcal (2) G-P(sol) polarization free energy of solvation -63.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds