Wall clock time and date at job start Mon Mar 30 2020 03:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99445 * 2 1 4 4 H 1.48509 * 109.47147 * 269.99565 * 3 2 1 5 5 H 1.48496 * 109.47702 * 29.99772 * 3 2 1 6 6 H 1.48511 * 109.47088 * 150.00173 * 3 2 1 7 7 C 1.37877 * 120.00335 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00098 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99827 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47084 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.47467 * 179.97438 * 10 9 7 12 12 C 1.46895 * 111.00322 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47056 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46965 * 179.97438 * 13 12 11 15 15 C 1.38386 * 120.00005 * 124.99984 * 14 13 12 16 16 N 1.32124 * 119.99712 * 180.02562 * 15 14 13 17 17 C 1.32158 * 120.00097 * 359.97438 * 16 15 14 18 18 C 1.38336 * 120.00075 * 0.26620 * 17 16 15 19 19 N 1.32127 * 120.00100 * 305.02162 * 14 13 12 20 20 H 0.96994 * 120.00528 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47015 * 59.99898 * 9 7 2 22 22 H 1.09007 * 109.46859 * 299.99615 * 9 7 2 23 23 H 1.09004 * 109.47148 * 59.99818 * 10 9 7 24 24 H 1.08997 * 109.47145 * 300.00044 * 10 9 7 25 25 H 1.00899 * 110.99787 * 303.95463 * 11 10 9 26 26 H 1.09000 * 109.47214 * 60.00066 * 12 11 10 27 27 H 1.08999 * 109.47130 * 300.00152 * 12 11 10 28 28 H 1.09000 * 109.47206 * 59.99876 * 13 12 11 29 29 H 1.08999 * 109.47125 * 299.99971 * 13 12 11 30 30 H 1.08005 * 120.00186 * 0.03930 * 15 14 13 31 31 H 1.08002 * 119.99718 * 179.97438 * 17 16 15 32 32 H 1.07998 * 120.00403 * 179.72028 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0018 11 7 1.5110 -4.9343 0.0024 12 6 2.4355 -6.0758 0.0031 13 6 1.6355 -7.3800 0.0031 14 6 2.5839 -8.5512 0.0031 15 6 2.4852 -9.5215 0.9848 16 7 3.3171 -10.5480 0.9850 17 6 4.2431 -10.6483 0.0475 18 6 4.3450 -9.6757 -0.9310 19 7 3.5100 -8.6513 -0.9340 20 1 -0.4850 0.8399 -0.0004 21 1 0.6249 -2.5571 -0.8896 22 1 0.6242 -2.5567 0.8904 23 1 2.8714 -3.6038 0.8923 24 1 2.8727 -3.6046 -0.8877 25 1 0.8743 -4.9838 0.7836 26 1 3.0635 -6.0344 0.8931 27 1 3.0635 -6.0352 -0.8869 28 1 1.0078 -7.4212 -0.8871 29 1 1.0071 -7.4208 0.8928 30 1 1.7280 -9.4398 1.7506 31 1 4.9234 -11.4871 0.0480 32 1 5.1046 -9.7553 -1.6945 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389948628.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:29 Heat of formation + Delta-G solvation = 32.103144 kcal Electronic energy + Delta-G solvation = -13785.515978 eV Core-core repulsion = 11359.566055 eV Total energy + Delta-G solvation = -2425.949923 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.26077 -36.53069 -34.61340 -33.49205 -32.50453 -30.15158 -27.90485 -25.03768 -24.48383 -23.15029 -21.46112 -20.45521 -17.73798 -17.16434 -16.36289 -16.01442 -15.71888 -14.82646 -14.47619 -14.22394 -13.52612 -13.37655 -13.14622 -12.48900 -12.00782 -11.91919 -11.74345 -11.29883 -11.25149 -10.90971 -10.89761 -10.53250 -9.97700 -9.51247 -9.32459 -9.21905 -9.10645 -8.34076 -7.83573 -5.98626 -4.01136 0.55866 0.93429 3.33291 3.39194 3.42471 3.48075 3.83582 4.06196 4.23132 4.43984 4.53387 4.84532 4.93746 5.15595 5.24443 5.34519 5.37280 5.41410 5.65964 6.05360 6.13955 6.20156 6.36831 6.44430 6.99059 7.06966 7.46357 7.58621 7.73506 7.83409 7.96564 8.09407 8.44871 9.06109 9.62569 11.12849 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.075290 B = 0.003853 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.804151 B = 7264.818932 C = 7460.536358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.692 5.692 12 C 0.068 3.932 13 C -0.068 4.068 14 C 0.094 3.906 15 C 0.049 3.951 16 N -0.438 5.438 17 C 0.034 3.966 18 C 0.055 3.945 19 N -0.433 5.433 20 H 0.260 0.740 21 H 0.026 0.974 22 H 0.014 0.986 23 H 0.015 0.985 24 H 0.059 0.941 25 H 0.335 0.665 26 H 0.020 0.980 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.169 0.831 31 H 0.167 0.833 32 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.049 -19.602 0.718 20.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.322 5.322 12 C -0.062 4.062 13 C -0.106 4.106 14 C -0.047 4.047 15 C -0.111 4.111 16 N -0.153 5.153 17 C -0.126 4.126 18 C -0.105 4.105 19 N -0.149 5.149 20 H 0.070 0.930 21 H 0.044 0.956 22 H 0.032 0.968 23 H 0.033 0.967 24 H 0.077 0.923 25 H 0.152 0.848 26 H 0.038 0.962 27 H 0.097 0.903 28 H 0.115 0.885 29 H 0.101 0.899 30 H 0.186 0.814 31 H 0.185 0.815 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 5.823 -19.492 0.040 20.343 hybrid contribution 0.889 0.887 0.896 1.543 sum 6.712 -18.605 0.936 19.801 Atomic orbital electron populations 1.69971 1.06025 1.26594 1.50693 1.25005 0.94852 0.99223 0.95306 0.86582 0.79782 0.83419 0.78129 1.20611 1.21222 1.19934 1.21185 0.93004 0.91039 1.50840 0.92764 1.19076 0.94025 0.90407 0.97756 1.22155 0.96988 0.88313 0.98706 1.60580 1.19839 1.02186 1.49636 1.21811 0.94427 0.89198 1.00768 1.20568 0.95606 0.90138 1.04318 1.22405 0.94525 0.96692 0.91098 1.23674 0.98155 0.90666 0.98626 1.68431 1.02678 1.21562 1.22586 1.23730 0.96957 0.99920 0.91969 1.23821 0.97524 0.90554 0.98608 1.68331 1.02449 1.21493 1.22608 0.92988 0.95572 0.96777 0.96701 0.92272 0.84775 0.96226 0.90313 0.88469 0.89886 0.81362 0.81534 0.81380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.11 13.29 55.43 0.74 -26.38 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.65 5.23 -27.88 -0.15 0.51 16 10 C 0.07 1.43 5.62 -3.83 -0.02 1.41 16 11 N -0.69 -12.34 6.50 -113.78 -0.74 -13.08 16 12 C 0.07 1.01 5.55 -3.82 -0.02 0.99 16 13 C -0.07 -0.79 5.89 -27.88 -0.16 -0.95 16 14 C 0.09 1.09 6.18 -82.41 -0.51 0.58 16 15 C 0.05 0.51 10.85 -17.37 -0.19 0.32 16 16 N -0.44 -4.78 10.50 -13.06 -0.14 -4.92 16 17 C 0.03 0.30 11.22 -17.38 -0.20 0.10 16 18 C 0.05 0.51 11.22 -17.38 -0.20 0.32 16 19 N -0.43 -5.33 10.05 -9.29 -0.09 -5.42 16 20 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 21 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.01 0.38 8.14 -51.92 -0.42 -0.04 16 23 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 24 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 25 H 0.34 5.57 8.73 -39.29 -0.34 5.23 16 26 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.08 1.27 7.96 -51.93 -0.41 0.85 16 28 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.08 0.79 7.89 -51.93 -0.41 0.38 16 30 H 0.17 1.31 7.96 -52.48 -0.42 0.89 16 31 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 281.09 15.07 4.24 4.24 Total: -1.00 -32.61 281.09 -7.38 -39.99 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -4.51 Total: -0.77 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -1.85 Total: -10.48 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.23 Total: -49.79 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.61 -7.38 -39.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389948628.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.090 kcal (2) G-P(sol) polarization free energy of solvation -32.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds