Wall clock time and date at job start Mon Mar 30 2020 03:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99445 * 2 1 4 4 H 1.48509 * 109.47147 * 269.99565 * 3 2 1 5 5 H 1.48496 * 109.47702 * 29.99772 * 3 2 1 6 6 H 1.48511 * 109.47088 * 150.00173 * 3 2 1 7 7 C 1.37877 * 120.00335 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00098 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99827 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47084 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.47467 * 179.97438 * 10 9 7 12 12 C 1.46895 * 111.00322 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47056 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46965 * 179.97438 * 13 12 11 15 15 C 1.38386 * 120.00005 * 124.99984 * 14 13 12 16 16 N 1.32124 * 119.99712 * 180.02562 * 15 14 13 17 17 C 1.32158 * 120.00097 * 359.97438 * 16 15 14 18 18 C 1.38336 * 120.00075 * 0.26620 * 17 16 15 19 19 N 1.32127 * 120.00100 * 305.02162 * 14 13 12 20 20 H 0.96994 * 120.00528 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47015 * 59.99898 * 9 7 2 22 22 H 1.09007 * 109.46859 * 299.99615 * 9 7 2 23 23 H 1.09004 * 109.47148 * 59.99818 * 10 9 7 24 24 H 1.08997 * 109.47145 * 300.00044 * 10 9 7 25 25 H 1.00899 * 110.99787 * 303.95463 * 11 10 9 26 26 H 1.09000 * 109.47214 * 60.00066 * 12 11 10 27 27 H 1.08999 * 109.47130 * 300.00152 * 12 11 10 28 28 H 1.09000 * 109.47206 * 59.99876 * 13 12 11 29 29 H 1.08999 * 109.47125 * 299.99971 * 13 12 11 30 30 H 1.08005 * 120.00186 * 0.03930 * 15 14 13 31 31 H 1.08002 * 119.99718 * 179.97438 * 17 16 15 32 32 H 1.07998 * 120.00403 * 179.72028 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0018 11 7 1.5110 -4.9343 0.0024 12 6 2.4355 -6.0758 0.0031 13 6 1.6355 -7.3800 0.0031 14 6 2.5839 -8.5512 0.0031 15 6 2.4852 -9.5215 0.9848 16 7 3.3171 -10.5480 0.9850 17 6 4.2431 -10.6483 0.0475 18 6 4.3450 -9.6757 -0.9310 19 7 3.5100 -8.6513 -0.9340 20 1 -0.4850 0.8399 -0.0004 21 1 0.6249 -2.5571 -0.8896 22 1 0.6242 -2.5567 0.8904 23 1 2.8714 -3.6038 0.8923 24 1 2.8727 -3.6046 -0.8877 25 1 0.8743 -4.9838 0.7836 26 1 3.0635 -6.0344 0.8931 27 1 3.0635 -6.0352 -0.8869 28 1 1.0078 -7.4212 -0.8871 29 1 1.0071 -7.4208 0.8928 30 1 1.7280 -9.4398 1.7506 31 1 4.9234 -11.4871 0.0480 32 1 5.1046 -9.7553 -1.6945 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389948628.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:28 Heat of formation + Delta-G solvation = 8.321471 kcal Electronic energy + Delta-G solvation = -13786.547229 eV Core-core repulsion = 11359.566055 eV Total energy + Delta-G solvation = -2426.981174 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.01664 -37.92739 -35.74382 -34.99447 -33.88692 -31.66866 -29.30667 -26.39613 -25.57609 -24.42864 -22.67710 -22.21369 -18.58226 -18.45334 -17.84762 -17.08167 -16.86992 -16.48096 -15.79676 -15.37092 -14.84945 -14.76073 -14.43991 -14.00394 -13.29216 -13.24015 -13.10843 -12.79994 -12.55868 -12.42115 -12.24810 -12.13192 -11.82614 -11.42039 -11.27443 -10.56246 -10.15300 -9.99232 -9.32719 -8.20347 -6.31898 -0.16994 0.16761 1.40705 1.42425 1.53367 2.40701 2.72580 3.05181 3.12962 3.35379 3.40267 3.60580 3.96275 4.06581 4.25327 4.38235 4.43117 4.55870 4.58775 4.63399 4.66196 5.04216 5.05624 5.09756 5.44141 5.46052 5.67299 5.77762 6.11381 6.25330 6.33787 6.56243 6.84380 6.85106 7.37272 8.91807 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.075290 B = 0.003853 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.804151 B = 7264.818932 C = 7460.536358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.031 3.969 10 C 0.084 3.916 11 N -0.696 5.696 12 C 0.075 3.925 13 C -0.057 4.057 14 C 0.075 3.925 15 C 0.047 3.953 16 N -0.460 5.460 17 C 0.041 3.959 18 C 0.050 3.950 19 N -0.466 5.466 20 H 0.264 0.736 21 H -0.004 1.004 22 H -0.005 1.005 23 H 0.018 0.982 24 H 0.054 0.946 25 H 0.343 0.657 26 H 0.022 0.978 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.190 0.810 31 H 0.203 0.797 32 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.358 -20.370 1.046 21.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.006 4.006 10 C -0.045 4.045 11 N -0.327 5.327 12 C -0.055 4.055 13 C -0.096 4.096 14 C -0.065 4.065 15 C -0.112 4.112 16 N -0.175 5.175 17 C -0.119 4.119 18 C -0.110 4.110 19 N -0.182 5.182 20 H 0.073 0.927 21 H 0.014 0.986 22 H 0.014 0.986 23 H 0.036 0.964 24 H 0.072 0.928 25 H 0.161 0.839 26 H 0.040 0.960 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.125 0.875 30 H 0.207 0.793 31 H 0.219 0.781 32 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 7.124 -20.277 0.376 21.496 hybrid contribution 0.509 1.023 0.767 1.376 sum 7.632 -19.255 1.143 20.744 Atomic orbital electron populations 1.70100 1.07774 1.27858 1.51332 1.25975 0.95802 1.03364 0.94577 0.85414 0.78608 0.78278 0.78524 1.19764 1.20553 1.18785 1.21619 0.93511 0.92357 1.51074 0.92304 1.18927 0.94284 0.92103 0.95296 1.21767 0.95665 0.88509 0.98568 1.60459 1.20311 1.01648 1.50284 1.21753 0.94179 0.89464 1.00058 1.20438 0.95416 0.88549 1.05179 1.22333 0.95025 0.97170 0.91940 1.23955 0.98468 0.90170 0.98617 1.68504 1.03517 1.21883 1.23592 1.24329 0.96377 1.00400 0.90746 1.24353 0.97436 0.89795 0.99417 1.68284 1.03428 1.23103 1.23415 0.92674 0.98584 0.98630 0.96395 0.92773 0.83867 0.96015 0.91809 0.89182 0.87547 0.79285 0.78063 0.78487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.97 44.65 29.54 68.60 2.03 46.67 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.55 -31.79 9.11 25.60 0.23 -31.56 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.70 5.23 29.85 0.16 1.86 16 10 C 0.08 3.64 5.62 86.30 0.49 4.13 16 11 N -0.70 -24.79 6.50 -513.90 -3.34 -28.13 16 12 C 0.08 2.19 5.55 86.31 0.48 2.67 16 13 C -0.06 -1.28 5.89 29.85 0.18 -1.10 16 14 C 0.08 1.67 6.18 42.55 0.26 1.93 16 15 C 0.05 0.90 10.85 84.68 0.92 1.82 16 16 N -0.46 -9.13 10.50 -195.22 -2.05 -11.18 16 17 C 0.04 0.62 11.22 84.67 0.95 1.57 16 18 C 0.05 0.83 11.22 84.67 0.95 1.79 16 19 N -0.47 -11.00 10.05 -183.29 -1.84 -12.84 16 20 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 21 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 22 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 23 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 25 H 0.34 11.31 8.73 -89.69 -0.78 10.53 16 26 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.06 2.05 7.96 -2.39 -0.02 2.03 16 28 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.11 1.83 7.89 -2.39 -0.02 1.82 16 30 H 0.19 2.57 7.96 -2.91 -0.02 2.54 16 31 H 0.20 1.43 8.06 -2.91 -0.02 1.40 16 32 H 0.20 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -70.34 281.09 0.47 -69.87 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.32 Total: 8.92 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 5.07 Total: -16.39 kcal Atomic # 7 Polarization: -102.12 SS G_CDS: -6.95 Total: -109.07 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -70.34 0.47 -69.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389948628.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.193 kcal (2) G-P(sol) polarization free energy of solvation -70.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds