Wall clock time and date at job start Mon Mar 30 2020 02:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.46976 * 2 1 4 4 C 1.52996 * 109.47408 * 239.99781 * 2 1 3 5 5 N 1.46904 * 109.47257 * 179.97438 * 4 2 1 6 6 O 1.42904 * 109.47328 * 119.99666 * 2 1 3 7 7 C 1.35671 * 116.99952 * 274.61645 * 6 2 1 8 8 C 1.39313 * 119.82086 * 5.28403 * 7 6 2 9 9 C 1.36437 * 120.19123 * 180.02562 * 8 7 6 10 10 C 1.40837 * 119.80793 * 0.02562 * 9 8 7 11 11 C 1.41209 * 120.18184 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99840 * 336.30121 * 11 10 9 13 13 C 1.39884 * 120.00166 * 156.28978 * 11 10 9 14 14 N 1.30885 * 120.00203 * 338.96628 * 13 11 10 15 15 Si 1.86800 * 120.00001 * 158.96310 * 13 11 10 16 16 H 1.48501 * 109.47395 * 94.99244 * 15 13 11 17 17 H 1.48504 * 109.47289 * 214.99135 * 15 13 11 18 18 H 1.48499 * 109.47195 * 334.98825 * 15 13 11 19 19 C 1.40840 * 119.64241 * 0.25549 * 10 9 8 20 20 C 1.36439 * 119.80802 * 359.45979 * 19 10 9 21 21 H 1.09003 * 109.47324 * 300.00031 * 1 2 3 22 22 H 1.09002 * 109.47101 * 60.00490 * 1 2 3 23 23 H 1.08999 * 109.47131 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47341 * 300.00319 * 4 2 1 25 25 H 1.09010 * 109.47019 * 60.00094 * 4 2 1 26 26 H 1.00900 * 111.00027 * 179.97438 * 5 4 2 27 27 H 1.00891 * 111.00353 * 303.95633 * 5 4 2 28 28 H 1.08005 * 119.90820 * 0.02700 * 8 7 6 29 29 H 1.07994 * 120.09836 * 179.97438 * 9 8 7 30 30 H 0.97005 * 120.00109 * 179.97438 * 14 13 11 31 31 H 1.07996 * 120.09522 * 179.72476 * 19 10 9 32 32 H 1.08002 * 119.90918 * 180.28040 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5091 -0.7207 -1.2494 6 8 2.0064 -0.6736 1.1668 7 6 2.1200 0.0634 2.3002 8 6 1.6744 1.3833 2.3159 9 6 1.7855 2.1315 3.4514 10 6 2.3530 1.5660 4.6097 11 6 2.4722 2.3333 5.7891 12 1 2.5009 3.4114 5.7313 13 6 2.5530 1.6972 7.0323 14 7 2.1176 0.4705 7.1693 15 14 3.2824 2.5984 8.4970 16 1 2.1916 3.2253 9.2859 17 1 4.0217 1.6357 9.3525 18 1 4.2139 3.6506 8.0170 19 6 2.8063 0.2328 4.5837 20 6 2.6826 -0.5035 3.4417 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.6767 -1.7489 -1.2492 25 1 1.6767 -0.2074 -2.1392 26 1 3.8707 -1.1921 -2.0650 27 1 3.8703 0.2191 -1.1847 28 1 1.2398 1.8156 1.4267 29 1 1.4400 3.1546 3.4618 30 1 2.1740 0.0292 8.0313 31 1 3.2467 -0.2068 5.4664 32 1 3.0256 -1.5274 3.4213 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393170547.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:59 Heat of formation + Delta-G solvation = -25.553077 kcal Electronic energy + Delta-G solvation = -14671.307457 eV Core-core repulsion = 12210.564621 eV Total energy + Delta-G solvation = -2460.742836 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.99688 -36.69017 -34.47521 -33.14311 -30.93458 -29.37968 -28.94232 -25.18911 -24.41827 -22.07940 -20.63393 -19.90995 -17.34117 -17.13619 -15.72643 -15.16222 -14.96225 -14.21433 -13.90193 -13.84437 -13.52765 -12.70091 -12.57620 -12.23389 -11.98498 -11.78629 -11.56182 -11.37667 -11.08405 -10.82282 -10.54429 -10.34865 -9.86863 -9.76614 -9.23974 -8.90344 -8.57905 -7.55769 -6.94564 -6.67720 -4.17011 2.84282 3.02514 3.11867 3.16149 3.27829 3.99567 4.17101 4.58391 4.67660 5.11136 5.32361 5.47383 5.51766 5.74377 5.81672 5.86917 6.13957 6.16067 6.33310 6.41464 6.83568 7.05322 7.16099 7.21201 7.26079 7.48914 7.55954 7.64039 7.88725 8.07737 8.27645 8.56175 8.75331 8.96327 9.07882 10.26507 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.060516 B = 0.006081 C = 0.005965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.575263 B = 4603.508492 C = 4692.799754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.089 3.911 3 H 0.062 0.938 4 C 0.068 3.932 5 N -0.841 5.841 6 O -0.306 6.306 7 C 0.000 4.000 8 C -0.171 4.171 9 C -0.199 4.199 10 C 0.087 3.913 11 C -0.467 4.467 12 H 0.075 0.925 13 C 0.078 3.922 14 N -0.797 5.797 15 Si 0.903 3.097 16 H -0.272 1.272 17 H -0.276 1.276 18 H -0.261 1.261 19 C -0.135 4.135 20 C -0.120 4.120 21 H 0.068 0.932 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.035 0.965 26 H 0.337 0.663 27 H 0.340 0.660 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.279 0.721 31 H 0.121 0.879 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.248 -0.389 -10.284 10.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.031 3.969 3 H 0.080 0.920 4 C -0.063 4.063 5 N -0.370 5.370 6 O -0.222 6.222 7 C -0.043 4.043 8 C -0.190 4.190 9 C -0.219 4.219 10 C 0.085 3.915 11 C -0.497 4.497 12 H 0.094 0.906 13 C -0.139 4.139 14 N -0.423 5.423 15 Si 0.727 3.273 16 H -0.197 1.197 17 H -0.201 1.201 18 H -0.185 1.185 19 C -0.155 4.155 20 C -0.139 4.139 21 H 0.087 0.913 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.053 0.947 26 H 0.149 0.851 27 H 0.153 0.847 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.139 0.861 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.315 -1.196 -9.450 9.531 hybrid contribution -0.019 1.158 -0.198 1.175 sum -0.334 -0.038 -9.648 9.654 Atomic orbital electron populations 1.22328 0.96081 1.02745 1.02387 1.22072 0.93126 0.96225 0.85490 0.91989 1.21874 0.88468 1.01238 0.94687 1.58482 1.07235 1.23704 1.47623 1.85960 1.82771 1.37305 1.16119 1.18605 1.07896 0.91207 0.86633 1.20433 1.06094 0.94167 0.98323 1.20537 1.07641 0.99215 0.94504 1.17566 0.89507 0.92249 0.92195 1.19419 1.45399 0.94522 0.90339 0.90645 1.25856 0.92807 0.94804 1.00480 1.69867 1.33385 1.12956 1.26062 0.86397 0.80008 0.80284 0.80581 1.19732 1.20085 1.18501 1.20901 1.02860 0.95465 0.96230 1.19824 1.03227 0.98958 0.91862 0.91253 0.92286 0.91929 0.90448 0.94663 0.85111 0.84742 0.88802 0.88959 0.90991 0.86115 0.88567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.56 9.18 37.16 0.34 -2.21 16 2 C 0.09 1.44 2.43 -26.73 -0.06 1.38 16 3 H 0.06 1.02 6.25 -51.92 -0.32 0.70 16 4 C 0.07 0.89 6.48 -3.82 -0.02 0.86 16 5 N -0.84 -10.96 9.49 -10.37 -0.10 -11.06 16 6 O -0.31 -6.46 9.65 -18.71 -0.18 -6.64 16 7 C 0.00 0.00 6.63 -38.78 -0.26 -0.26 16 8 C -0.17 -3.95 8.19 -39.83 -0.33 -4.28 16 9 C -0.20 -5.00 9.74 -39.25 -0.38 -5.39 16 10 C 0.09 2.38 5.57 -106.80 -0.59 1.78 16 11 C -0.47 -12.65 9.02 -37.84 -0.34 -12.99 16 12 H 0.08 1.96 7.93 -52.48 -0.42 1.55 16 13 C 0.08 1.99 5.06 -17.34 -0.09 1.90 16 14 N -0.80 -21.07 11.12 55.54 0.62 -20.45 16 15 Si 0.90 18.97 29.61 -169.99 -5.03 13.93 16 16 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 17 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 18 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 19 C -0.14 -3.63 8.66 -39.25 -0.34 -3.97 16 20 C -0.12 -3.01 9.92 -39.83 -0.40 -3.40 16 21 H 0.07 1.13 6.96 -51.93 -0.36 0.77 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.04 0.37 8.14 -51.92 -0.42 -0.05 16 26 H 0.34 3.40 9.08 -39.29 -0.36 3.04 16 27 H 0.34 4.19 8.99 -39.30 -0.35 3.84 16 28 H 0.09 1.89 5.42 -52.48 -0.28 1.60 16 29 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 30 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 31 H 0.12 3.31 6.24 -52.49 -0.33 2.98 16 32 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 269.91 15.07 4.07 4.07 Total: -1.00 -29.40 269.91 -7.19 -36.59 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -4.09 Total: 10.14 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: -2.47 Total: -26.57 kcal Atomic # 7 Polarization: -32.03 SS G_CDS: 0.52 Total: -31.52 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.18 Total: -6.64 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.40 -7.19 -36.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393170547.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.040 kcal (2) G-P(sol) polarization free energy of solvation -29.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds