Wall clock time and date at job start Mon Mar 30 2020 02:32:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08999 * 109.47451 * 2 1
4 4 C 1.53001 * 109.46813 * 119.99453 * 2 1 3
5 5 N 1.46907 * 109.47052 * 185.00186 * 4 2 1
6 6 O 1.42904 * 109.47312 * 239.99487 * 2 1 3
7 7 C 1.35673 * 116.99537 * 83.24340 * 6 2 1
8 8 C 1.39309 * 119.82229 * 355.51565 * 7 6 2
9 9 C 1.36432 * 120.18655 * 180.25740 * 8 7 6
10 10 C 1.40835 * 119.81361 * 359.47940 * 9 8 7
11 11 C 1.41206 * 120.18425 * 180.30018 * 10 9 8
12 12 H 1.08005 * 119.99753 * 331.09564 * 11 10 9
13 13 C 1.39891 * 120.00446 * 151.10005 * 11 10 9
14 14 N 1.30882 * 119.99942 * 348.97480 * 13 11 10
15 15 Si 1.86803 * 120.00092 * 168.98052 * 13 11 10
16 16 H 1.48491 * 109.47359 * 89.99687 * 15 13 11
17 17 H 1.48500 * 109.46769 * 209.99829 * 15 13 11
18 18 H 1.48497 * 109.47114 * 329.99269 * 15 13 11
19 19 C 1.40834 * 119.63733 * 0.26889 * 10 9 8
20 20 C 1.36432 * 119.81343 * 0.02562 * 19 10 9
21 21 H 1.08993 * 109.46902 * 300.00315 * 1 2 3
22 22 H 1.09001 * 109.46909 * 60.00197 * 1 2 3
23 23 H 1.09002 * 109.46718 * 180.02562 * 1 2 3
24 24 H 1.09002 * 109.47543 * 305.00021 * 4 2 1
25 25 H 1.08997 * 109.47019 * 65.00697 * 4 2 1
26 26 H 1.00895 * 110.99894 * 56.04449 * 5 4 2
27 27 H 1.00893 * 110.99844 * 180.02562 * 5 4 2
28 28 H 1.08007 * 119.90930 * 0.03614 * 8 7 6
29 29 H 1.08003 * 120.09448 * 179.75044 * 9 8 7
30 30 H 0.96999 * 120.00132 * 180.02562 * 14 13 11
31 31 H 1.07997 * 120.09263 * 180.02562 * 19 10 9
32 32 H 1.08005 * 119.90910 * 179.97438 * 20 19 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7211 1.2493
5 7 3.5040 -0.6175 1.3113
6 8 2.0064 -0.6738 -1.1667
7 6 2.0776 0.0518 -2.3109
8 6 1.6069 1.3628 -2.3304
9 6 1.6701 2.0974 -3.4783
10 6 2.2231 1.5305 -4.6429
11 6 2.2981 2.2859 -5.8336
12 1 1.5713 3.0607 -6.0282
13 6 3.3138 2.0307 -6.7611
14 7 4.3144 1.2513 -6.4379
15 14 3.2421 2.8024 -8.4607
16 1 3.9341 4.1160 -8.4375
17 1 3.9110 1.9077 -9.4391
18 1 1.8241 2.9969 -8.8566
19 6 2.7015 0.2062 -4.6133
20 6 2.6254 -0.5168 -3.4588
21 1 -0.3633 0.5139 0.8899
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3633 -1.0277 0.0005
24 1 1.6053 -0.2616 2.1371
25 1 1.7517 -1.7714 1.2057
26 1 3.7995 0.3469 1.2875
27 1 3.8655 -1.0867 2.1281
28 1 1.1875 1.7978 -1.4351
29 1 1.3011 3.1124 -3.4928
30 1 5.0188 1.0746 -7.0809
31 1 3.1274 -0.2357 -5.5019
32 1 2.9914 -1.5327 -3.4344
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000393170551.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:32:01
Heat of formation + Delta-G solvation = -25.517436 kcal
Electronic energy + Delta-G solvation = -14671.699196 eV
Core-core repulsion = 12210.957906 eV
Total energy + Delta-G solvation = -2460.741290 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 221.116 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-39.02668 -36.69591 -34.49083 -33.09873 -30.94171 -29.38101 -28.91406 -25.21416
-24.40403 -22.07186 -20.64760 -19.91186 -17.34197 -17.12979 -15.72150 -15.14877
-14.99790 -14.24291 -13.89839 -13.81625 -13.53435 -12.69454 -12.56367 -12.25644
-11.99340 -11.77042 -11.55659 -11.19983 -11.12313 -10.93963 -10.61386 -10.34828
-9.81867 -9.68804 -9.21859 -9.00408 -8.58453 -7.55947 -6.86127 -6.59479
-4.19583 2.85761 3.02163 3.13124 3.17490 3.26572 4.02196 4.15080
4.57463 4.73906 5.09684 5.33714 5.45270 5.51321 5.73146 5.79431
5.85283 6.12772 6.14426 6.32390 6.39175 6.83233 7.05334 7.16735
7.21458 7.28507 7.48497 7.56795 7.65214 7.87337 8.09029 8.29583
8.56757 8.75638 8.99140 9.07649 10.35404
Molecular weight = 221.12amu
Principal moments of inertia in cm(-1)
A = 0.059279 B = 0.006171 C = 0.005893
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 472.230527 B = 4536.150314 C = 4750.654674
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C 0.089 3.911
3 H 0.062 0.938
4 C 0.068 3.932
5 N -0.842 5.842
6 O -0.308 6.308
7 C 0.008 3.992
8 C -0.177 4.177
9 C -0.192 4.192
10 C 0.084 3.916
11 C -0.466 4.466
12 H 0.074 0.926
13 C 0.072 3.928
14 N -0.810 5.810
15 Si 0.909 3.091
16 H -0.272 1.272
17 H -0.277 1.277
18 H -0.263 1.263
19 C -0.124 4.124
20 C -0.126 4.126
21 H 0.058 0.942
22 H 0.069 0.931
23 H 0.062 0.938
24 H 0.036 0.964
25 H 0.078 0.922
26 H 0.340 0.660
27 H 0.337 0.663
28 H 0.095 0.905
29 H 0.093 0.907
30 H 0.278 0.722
31 H 0.126 0.874
32 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.314 -1.348 9.604 10.249
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.236 4.236
2 C 0.031 3.969
3 H 0.080 0.920
4 C -0.062 4.062
5 N -0.372 5.372
6 O -0.223 6.223
7 C -0.036 4.036
8 C -0.195 4.195
9 C -0.212 4.212
10 C 0.081 3.919
11 C -0.497 4.497
12 H 0.092 0.908
13 C -0.143 4.143
14 N -0.437 5.437
15 Si 0.734 3.266
16 H -0.197 1.197
17 H -0.203 1.203
18 H -0.187 1.187
19 C -0.144 4.144
20 C -0.145 4.145
21 H 0.077 0.923
22 H 0.088 0.912
23 H 0.081 0.919
24 H 0.054 0.946
25 H 0.096 0.904
26 H 0.153 0.847
27 H 0.150 0.850
28 H 0.113 0.887
29 H 0.111 0.889
30 H 0.089 0.911
31 H 0.144 0.856
32 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -3.055 -2.042 8.836 9.570
hybrid contribution -0.156 1.184 0.212 1.213
sum -3.211 -0.858 9.049 9.640
Atomic orbital electron populations
1.22346 0.96107 1.02735 1.02441 1.22066 0.93035 0.96299 0.85455
0.91972 1.21856 0.88243 1.01473 0.94667 1.58499 1.09945 1.20923
1.47825 1.85959 1.82604 1.38249 1.15495 1.18657 1.06828 0.91809
0.86283 1.20441 1.06455 0.94402 0.98241 1.20609 1.09344 0.98398
0.92857 1.17591 0.90694 0.91528 0.92044 1.19413 1.11185 1.17101
1.01984 0.90817 1.25834 0.94292 0.94265 0.99899 1.69802 1.07703
1.30829 1.35398 0.86311 0.79386 0.79367 0.81565 1.19710 1.20260
1.18714 1.21020 1.02763 0.93969 0.96631 1.19870 1.03374 0.99333
0.91874 0.92269 0.91202 0.91932 0.94581 0.90356 0.84726 0.85040
0.88730 0.88891 0.91134 0.85592 0.88508
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.51 9.13 37.16 0.34 -2.17 16
2 C 0.09 1.45 2.41 -26.73 -0.06 1.38 16
3 H 0.06 1.03 6.35 -51.93 -0.33 0.70 16
4 C 0.07 0.89 6.45 -3.82 -0.02 0.87 16
5 N -0.84 -11.10 9.57 -10.36 -0.10 -11.20 16
6 O -0.31 -6.48 9.74 -18.72 -0.18 -6.66 16
7 C 0.01 0.18 6.61 -38.78 -0.26 -0.07 16
8 C -0.18 -4.06 8.10 -39.83 -0.32 -4.38 16
9 C -0.19 -4.82 9.74 -39.25 -0.38 -5.20 16
10 C 0.08 2.28 5.55 -106.81 -0.59 1.69 16
11 C -0.47 -12.66 9.05 -37.84 -0.34 -13.01 16
12 H 0.07 1.92 7.87 -52.48 -0.41 1.51 16
13 C 0.07 1.86 5.24 -17.34 -0.09 1.77 16
14 N -0.81 -21.62 10.86 55.54 0.60 -21.02 16
15 Si 0.91 19.21 29.57 -169.99 -5.03 14.19 16
16 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16
17 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16
18 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16
19 C -0.12 -3.34 8.60 -39.25 -0.34 -3.68 16
20 C -0.13 -3.15 9.92 -39.83 -0.40 -3.54 16
21 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
22 H 0.07 1.10 6.77 -51.93 -0.35 0.75 16
23 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16
24 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16
25 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16
26 H 0.34 4.23 8.99 -39.29 -0.35 3.88 16
27 H 0.34 3.45 9.08 -39.30 -0.36 3.09 16
28 H 0.09 1.89 5.36 -52.48 -0.28 1.61 16
29 H 0.09 2.18 8.06 -52.48 -0.42 1.75 16
30 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16
31 H 0.13 3.47 6.23 -52.49 -0.33 3.14 16
32 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16
LS Contribution 269.50 15.07 4.06 4.06
Total: -1.00 -29.51 269.50 -7.20 -36.71
By element:
Atomic # 1 Polarization: 14.34 SS G_CDS: -4.08 Total: 10.25 kcal
Atomic # 6 Polarization: -23.87 SS G_CDS: -2.47 Total: -26.34 kcal
Atomic # 7 Polarization: -32.72 SS G_CDS: 0.50 Total: -32.22 kcal
Atomic # 8 Polarization: -6.48 SS G_CDS: -0.18 Total: -6.66 kcal
Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.19 kcal
Total LS contribution 4.06 Total: 4.06 kcal
Total: -29.51 -7.20 -36.71 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000393170551.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.195 kcal
(2) G-P(sol) polarization free energy of solvation -29.514 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.319 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.712 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.517 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds