Wall clock time and date at job start Mon Mar 30 2020 02:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47451 * 2 1 4 4 C 1.53001 * 109.46813 * 119.99453 * 2 1 3 5 5 N 1.46907 * 109.47052 * 185.00186 * 4 2 1 6 6 O 1.42904 * 109.47312 * 239.99487 * 2 1 3 7 7 C 1.35673 * 116.99537 * 83.24340 * 6 2 1 8 8 C 1.39309 * 119.82229 * 355.51565 * 7 6 2 9 9 C 1.36432 * 120.18655 * 180.25740 * 8 7 6 10 10 C 1.40835 * 119.81361 * 359.47940 * 9 8 7 11 11 C 1.41206 * 120.18425 * 180.30018 * 10 9 8 12 12 H 1.08005 * 119.99753 * 331.09564 * 11 10 9 13 13 C 1.39891 * 120.00446 * 151.10005 * 11 10 9 14 14 N 1.30882 * 119.99942 * 348.97480 * 13 11 10 15 15 Si 1.86803 * 120.00092 * 168.98052 * 13 11 10 16 16 H 1.48491 * 109.47359 * 89.99687 * 15 13 11 17 17 H 1.48500 * 109.46769 * 209.99829 * 15 13 11 18 18 H 1.48497 * 109.47114 * 329.99269 * 15 13 11 19 19 C 1.40834 * 119.63733 * 0.26889 * 10 9 8 20 20 C 1.36432 * 119.81343 * 0.02562 * 19 10 9 21 21 H 1.08993 * 109.46902 * 300.00315 * 1 2 3 22 22 H 1.09001 * 109.46909 * 60.00197 * 1 2 3 23 23 H 1.09002 * 109.46718 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47543 * 305.00021 * 4 2 1 25 25 H 1.08997 * 109.47019 * 65.00697 * 4 2 1 26 26 H 1.00895 * 110.99894 * 56.04449 * 5 4 2 27 27 H 1.00893 * 110.99844 * 180.02562 * 5 4 2 28 28 H 1.08007 * 119.90930 * 0.03614 * 8 7 6 29 29 H 1.08003 * 120.09448 * 179.75044 * 9 8 7 30 30 H 0.96999 * 120.00132 * 180.02562 * 14 13 11 31 31 H 1.07997 * 120.09263 * 180.02562 * 19 10 9 32 32 H 1.08005 * 119.90910 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5040 -0.6175 1.3113 6 8 2.0064 -0.6738 -1.1667 7 6 2.0776 0.0518 -2.3109 8 6 1.6069 1.3628 -2.3304 9 6 1.6701 2.0974 -3.4783 10 6 2.2231 1.5305 -4.6429 11 6 2.2981 2.2859 -5.8336 12 1 1.5713 3.0607 -6.0282 13 6 3.3138 2.0307 -6.7611 14 7 4.3144 1.2513 -6.4379 15 14 3.2421 2.8024 -8.4607 16 1 3.9341 4.1160 -8.4375 17 1 3.9110 1.9077 -9.4391 18 1 1.8241 2.9969 -8.8566 19 6 2.7015 0.2062 -4.6133 20 6 2.6254 -0.5168 -3.4588 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.6053 -0.2616 2.1371 25 1 1.7517 -1.7714 1.2057 26 1 3.7995 0.3469 1.2875 27 1 3.8655 -1.0867 2.1281 28 1 1.1875 1.7978 -1.4351 29 1 1.3011 3.1124 -3.4928 30 1 5.0188 1.0746 -7.0809 31 1 3.1274 -0.2357 -5.5019 32 1 2.9914 -1.5327 -3.4344 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393170551.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:01 Heat of formation + Delta-G solvation = -25.517436 kcal Electronic energy + Delta-G solvation = -14671.699196 eV Core-core repulsion = 12210.957906 eV Total energy + Delta-G solvation = -2460.741290 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.02668 -36.69591 -34.49083 -33.09873 -30.94171 -29.38101 -28.91406 -25.21416 -24.40403 -22.07186 -20.64760 -19.91186 -17.34197 -17.12979 -15.72150 -15.14877 -14.99790 -14.24291 -13.89839 -13.81625 -13.53435 -12.69454 -12.56367 -12.25644 -11.99340 -11.77042 -11.55659 -11.19983 -11.12313 -10.93963 -10.61386 -10.34828 -9.81867 -9.68804 -9.21859 -9.00408 -8.58453 -7.55947 -6.86127 -6.59479 -4.19583 2.85761 3.02163 3.13124 3.17490 3.26572 4.02196 4.15080 4.57463 4.73906 5.09684 5.33714 5.45270 5.51321 5.73146 5.79431 5.85283 6.12772 6.14426 6.32390 6.39175 6.83233 7.05334 7.16735 7.21458 7.28507 7.48497 7.56795 7.65214 7.87337 8.09029 8.29583 8.56757 8.75638 8.99140 9.07649 10.35404 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.059279 B = 0.006171 C = 0.005893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.230527 B = 4536.150314 C = 4750.654674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.089 3.911 3 H 0.062 0.938 4 C 0.068 3.932 5 N -0.842 5.842 6 O -0.308 6.308 7 C 0.008 3.992 8 C -0.177 4.177 9 C -0.192 4.192 10 C 0.084 3.916 11 C -0.466 4.466 12 H 0.074 0.926 13 C 0.072 3.928 14 N -0.810 5.810 15 Si 0.909 3.091 16 H -0.272 1.272 17 H -0.277 1.277 18 H -0.263 1.263 19 C -0.124 4.124 20 C -0.126 4.126 21 H 0.058 0.942 22 H 0.069 0.931 23 H 0.062 0.938 24 H 0.036 0.964 25 H 0.078 0.922 26 H 0.340 0.660 27 H 0.337 0.663 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.278 0.722 31 H 0.126 0.874 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.314 -1.348 9.604 10.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.031 3.969 3 H 0.080 0.920 4 C -0.062 4.062 5 N -0.372 5.372 6 O -0.223 6.223 7 C -0.036 4.036 8 C -0.195 4.195 9 C -0.212 4.212 10 C 0.081 3.919 11 C -0.497 4.497 12 H 0.092 0.908 13 C -0.143 4.143 14 N -0.437 5.437 15 Si 0.734 3.266 16 H -0.197 1.197 17 H -0.203 1.203 18 H -0.187 1.187 19 C -0.144 4.144 20 C -0.145 4.145 21 H 0.077 0.923 22 H 0.088 0.912 23 H 0.081 0.919 24 H 0.054 0.946 25 H 0.096 0.904 26 H 0.153 0.847 27 H 0.150 0.850 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.144 0.856 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.055 -2.042 8.836 9.570 hybrid contribution -0.156 1.184 0.212 1.213 sum -3.211 -0.858 9.049 9.640 Atomic orbital electron populations 1.22346 0.96107 1.02735 1.02441 1.22066 0.93035 0.96299 0.85455 0.91972 1.21856 0.88243 1.01473 0.94667 1.58499 1.09945 1.20923 1.47825 1.85959 1.82604 1.38249 1.15495 1.18657 1.06828 0.91809 0.86283 1.20441 1.06455 0.94402 0.98241 1.20609 1.09344 0.98398 0.92857 1.17591 0.90694 0.91528 0.92044 1.19413 1.11185 1.17101 1.01984 0.90817 1.25834 0.94292 0.94265 0.99899 1.69802 1.07703 1.30829 1.35398 0.86311 0.79386 0.79367 0.81565 1.19710 1.20260 1.18714 1.21020 1.02763 0.93969 0.96631 1.19870 1.03374 0.99333 0.91874 0.92269 0.91202 0.91932 0.94581 0.90356 0.84726 0.85040 0.88730 0.88891 0.91134 0.85592 0.88508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 9.13 37.16 0.34 -2.17 16 2 C 0.09 1.45 2.41 -26.73 -0.06 1.38 16 3 H 0.06 1.03 6.35 -51.93 -0.33 0.70 16 4 C 0.07 0.89 6.45 -3.82 -0.02 0.87 16 5 N -0.84 -11.10 9.57 -10.36 -0.10 -11.20 16 6 O -0.31 -6.48 9.74 -18.72 -0.18 -6.66 16 7 C 0.01 0.18 6.61 -38.78 -0.26 -0.07 16 8 C -0.18 -4.06 8.10 -39.83 -0.32 -4.38 16 9 C -0.19 -4.82 9.74 -39.25 -0.38 -5.20 16 10 C 0.08 2.28 5.55 -106.81 -0.59 1.69 16 11 C -0.47 -12.66 9.05 -37.84 -0.34 -13.01 16 12 H 0.07 1.92 7.87 -52.48 -0.41 1.51 16 13 C 0.07 1.86 5.24 -17.34 -0.09 1.77 16 14 N -0.81 -21.62 10.86 55.54 0.60 -21.02 16 15 Si 0.91 19.21 29.57 -169.99 -5.03 14.19 16 16 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 17 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 18 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 19 C -0.12 -3.34 8.60 -39.25 -0.34 -3.68 16 20 C -0.13 -3.15 9.92 -39.83 -0.40 -3.54 16 21 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.07 1.10 6.77 -51.93 -0.35 0.75 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.34 4.23 8.99 -39.29 -0.35 3.88 16 27 H 0.34 3.45 9.08 -39.30 -0.36 3.09 16 28 H 0.09 1.89 5.36 -52.48 -0.28 1.61 16 29 H 0.09 2.18 8.06 -52.48 -0.42 1.75 16 30 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 31 H 0.13 3.47 6.23 -52.49 -0.33 3.14 16 32 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 LS Contribution 269.50 15.07 4.06 4.06 Total: -1.00 -29.51 269.50 -7.20 -36.71 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -4.08 Total: 10.25 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: -2.47 Total: -26.34 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.50 Total: -32.22 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -0.18 Total: -6.66 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.51 -7.20 -36.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393170551.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.195 kcal (2) G-P(sol) polarization free energy of solvation -29.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds