Wall clock time and date at job start Mon Mar 30 2020 02:32:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08999 * 109.47451 * 2 1
4 4 C 1.53001 * 109.46813 * 119.99453 * 2 1 3
5 5 N 1.46907 * 109.47052 * 185.00186 * 4 2 1
6 6 O 1.42904 * 109.47312 * 239.99487 * 2 1 3
7 7 C 1.35673 * 116.99537 * 83.24340 * 6 2 1
8 8 C 1.39309 * 119.82229 * 355.51565 * 7 6 2
9 9 C 1.36432 * 120.18655 * 180.25740 * 8 7 6
10 10 C 1.40835 * 119.81361 * 359.47940 * 9 8 7
11 11 C 1.41206 * 120.18425 * 180.30018 * 10 9 8
12 12 H 1.08005 * 119.99753 * 331.09564 * 11 10 9
13 13 C 1.39891 * 120.00446 * 151.10005 * 11 10 9
14 14 N 1.30882 * 119.99942 * 348.97480 * 13 11 10
15 15 Si 1.86803 * 120.00092 * 168.98052 * 13 11 10
16 16 H 1.48491 * 109.47359 * 89.99687 * 15 13 11
17 17 H 1.48500 * 109.46769 * 209.99829 * 15 13 11
18 18 H 1.48497 * 109.47114 * 329.99269 * 15 13 11
19 19 C 1.40834 * 119.63733 * 0.26889 * 10 9 8
20 20 C 1.36432 * 119.81343 * 0.02562 * 19 10 9
21 21 H 1.08993 * 109.46902 * 300.00315 * 1 2 3
22 22 H 1.09001 * 109.46909 * 60.00197 * 1 2 3
23 23 H 1.09002 * 109.46718 * 180.02562 * 1 2 3
24 24 H 1.09002 * 109.47543 * 305.00021 * 4 2 1
25 25 H 1.08997 * 109.47019 * 65.00697 * 4 2 1
26 26 H 1.00895 * 110.99894 * 56.04449 * 5 4 2
27 27 H 1.00893 * 110.99844 * 180.02562 * 5 4 2
28 28 H 1.08007 * 119.90930 * 0.03614 * 8 7 6
29 29 H 1.08003 * 120.09448 * 179.75044 * 9 8 7
30 30 H 0.96999 * 120.00132 * 180.02562 * 14 13 11
31 31 H 1.07997 * 120.09263 * 180.02562 * 19 10 9
32 32 H 1.08005 * 119.90910 * 179.97438 * 20 19 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7211 1.2493
5 7 3.5040 -0.6175 1.3113
6 8 2.0064 -0.6738 -1.1667
7 6 2.0776 0.0518 -2.3109
8 6 1.6069 1.3628 -2.3304
9 6 1.6701 2.0974 -3.4783
10 6 2.2231 1.5305 -4.6429
11 6 2.2981 2.2859 -5.8336
12 1 1.5713 3.0607 -6.0282
13 6 3.3138 2.0307 -6.7611
14 7 4.3144 1.2513 -6.4379
15 14 3.2421 2.8024 -8.4607
16 1 3.9341 4.1160 -8.4375
17 1 3.9110 1.9077 -9.4391
18 1 1.8241 2.9969 -8.8566
19 6 2.7015 0.2062 -4.6133
20 6 2.6254 -0.5168 -3.4588
21 1 -0.3633 0.5139 0.8899
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3633 -1.0277 0.0005
24 1 1.6053 -0.2616 2.1371
25 1 1.7517 -1.7714 1.2057
26 1 3.7995 0.3469 1.2875
27 1 3.8655 -1.0867 2.1281
28 1 1.1875 1.7978 -1.4351
29 1 1.3011 3.1124 -3.4928
30 1 5.0188 1.0746 -7.0809
31 1 3.1274 -0.2357 -5.5019
32 1 2.9914 -1.5327 -3.4344
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000393170551.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:32:01
Heat of formation + Delta-G solvation = -45.135606 kcal
Electronic energy + Delta-G solvation = -14672.549904 eV
Core-core repulsion = 12210.957906 eV
Total energy + Delta-G solvation = -2461.591998 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 221.116 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-40.69672 -38.44296 -35.84933 -34.91102 -32.29290 -31.17353 -30.83554 -26.89593
-25.74891 -23.70372 -22.54804 -21.45749 -19.23765 -18.79051 -17.03450 -16.94564
-16.29776 -15.79472 -15.61643 -15.19236 -15.04177 -14.28873 -14.09355 -14.00050
-13.57734 -13.21995 -13.03278 -12.88387 -12.75648 -12.64070 -12.29236 -11.75466
-11.63927 -11.44205 -11.07252 -10.88292 -9.54821 -9.52483 -8.79405 -8.51664
-6.21799 0.98828 1.05747 1.40771 1.52016 1.55867 2.25676 2.66947
2.81184 3.58814 3.72651 3.95994 4.11599 4.30800 4.37335 4.38888
4.52809 4.70591 4.75904 4.93255 5.00852 5.12565 5.24137 5.27973
5.34965 5.63803 5.69818 5.92560 6.09550 6.24293 6.31249 6.61894
6.63166 6.88292 6.99581 7.16569 8.45142
Molecular weight = 221.12amu
Principal moments of inertia in cm(-1)
A = 0.059279 B = 0.006171 C = 0.005893
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 472.230527 B = 4536.150314 C = 4750.654674
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C 0.076 3.924
3 H 0.059 0.941
4 C 0.073 3.927
5 N -0.863 5.863
6 O -0.321 6.321
7 C 0.019 3.981
8 C -0.172 4.172
9 C -0.201 4.201
10 C 0.049 3.951
11 C -0.501 4.501
12 H 0.074 0.926
13 C 0.029 3.971
14 N -0.844 5.844
15 Si 0.985 3.015
16 H -0.264 1.264
17 H -0.269 1.269
18 H -0.259 1.259
19 C -0.143 4.143
20 C -0.142 4.142
21 H 0.094 0.906
22 H 0.049 0.951
23 H 0.066 0.934
24 H 0.073 0.927
25 H 0.077 0.923
26 H 0.343 0.657
27 H 0.353 0.647
28 H 0.128 0.872
29 H 0.105 0.895
30 H 0.285 0.715
31 H 0.109 0.891
32 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.970 -0.875 10.882 11.616
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.231 4.231
2 C 0.019 3.981
3 H 0.077 0.923
4 C -0.057 4.057
5 N -0.395 5.395
6 O -0.236 6.236
7 C -0.025 4.025
8 C -0.190 4.190
9 C -0.220 4.220
10 C 0.047 3.953
11 C -0.532 4.532
12 H 0.092 0.908
13 C -0.183 4.183
14 N -0.472 5.472
15 Si 0.806 3.194
16 H -0.189 1.189
17 H -0.193 1.193
18 H -0.183 1.183
19 C -0.162 4.162
20 C -0.161 4.161
21 H 0.113 0.887
22 H 0.068 0.932
23 H 0.085 0.915
24 H 0.091 0.909
25 H 0.095 0.905
26 H 0.156 0.844
27 H 0.168 0.832
28 H 0.146 0.854
29 H 0.123 0.877
30 H 0.095 0.905
31 H 0.127 0.873
32 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -3.718 -1.579 10.154 10.928
hybrid contribution 0.024 0.973 0.030 0.974
sum -3.694 -0.606 10.184 10.850
Atomic orbital electron populations
1.22309 0.94298 1.03311 1.03215 1.22545 0.94574 0.96342 0.84621
0.92288 1.21850 0.88373 1.01346 0.94148 1.58479 1.10335 1.21490
1.49231 1.85953 1.82752 1.38996 1.15930 1.18707 1.04980 0.91922
0.86884 1.20710 1.05541 0.94019 0.98747 1.20856 1.09022 0.99201
0.92953 1.17947 0.92048 0.92019 0.93294 1.19677 1.12248 1.18044
1.03224 0.90753 1.26723 0.93327 0.94549 1.03704 1.69879 1.08387
1.31979 1.36945 0.85166 0.79520 0.78586 0.76143 1.18859 1.19332
1.18292 1.20922 1.04047 0.94382 0.96862 1.20026 1.04012 0.99792
0.92274 0.88708 0.93176 0.91524 0.90901 0.90499 0.84402 0.83234
0.85441 0.87708 0.90504 0.87296 0.87720
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.34 9.13 71.98 0.66 -3.69 16
2 C 0.08 2.26 2.41 30.60 0.07 2.33 16
3 H 0.06 1.80 6.35 -2.39 -0.02 1.78 16
4 C 0.07 1.68 6.45 86.30 0.56 2.23 16
5 N -0.86 -20.69 9.57 -186.70 -1.79 -22.48 16
6 O -0.32 -13.05 9.74 -89.90 -0.88 -13.92 16
7 C 0.02 0.91 6.61 22.79 0.15 1.06 16
8 C -0.17 -7.72 8.10 22.11 0.18 -7.54 16
9 C -0.20 -10.09 9.74 22.48 0.22 -9.87 16
10 C 0.05 2.74 5.55 -21.28 -0.12 2.62 16
11 C -0.50 -27.92 9.05 23.40 0.21 -27.71 16
12 H 0.07 3.96 7.87 -2.91 -0.02 3.94 16
13 C 0.03 1.51 5.24 85.23 0.45 1.96 16
14 N -0.84 -46.19 10.86 21.82 0.24 -45.96 16
15 Si 0.98 39.65 29.57 68.60 2.03 41.68 16
16 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16
17 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16
18 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16
19 C -0.14 -7.93 8.60 22.48 0.19 -7.74 16
20 C -0.14 -7.26 9.92 22.11 0.22 -7.04 16
21 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16
22 H 0.05 1.45 6.77 -2.39 -0.02 1.44 16
23 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16
24 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16
25 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16
26 H 0.34 7.79 8.99 -89.70 -0.81 6.99 16
27 H 0.35 6.35 9.08 -89.70 -0.81 5.53 16
28 H 0.13 4.80 5.36 -2.91 -0.02 4.79 16
29 H 0.10 4.89 8.06 -2.91 -0.02 4.86 16
30 H 0.28 14.15 8.30 -92.71 -0.77 13.38 16
31 H 0.11 6.31 6.23 -2.91 -0.02 6.29 16
32 H 0.10 5.02 8.06 -2.91 -0.02 4.99 16
Total: -1.00 -64.33 269.50 1.91 -62.42
By element:
Atomic # 1 Polarization: 32.11 SS G_CDS: -0.48 Total: 31.63 kcal
Atomic # 6 Polarization: -56.16 SS G_CDS: 2.79 Total: -53.37 kcal
Atomic # 7 Polarization: -66.88 SS G_CDS: -1.55 Total: -68.43 kcal
Atomic # 8 Polarization: -13.05 SS G_CDS: -0.88 Total: -13.92 kcal
Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal
Total: -64.33 1.91 -62.42 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000393170551.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.288 kcal
(2) G-P(sol) polarization free energy of solvation -64.334 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.046 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.911 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.424 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.136 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds