Wall clock time and date at job start Mon Mar 30 2020 02:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47451 * 2 1 4 4 C 1.53001 * 109.46813 * 119.99453 * 2 1 3 5 5 N 1.46907 * 109.47052 * 185.00186 * 4 2 1 6 6 O 1.42904 * 109.47312 * 239.99487 * 2 1 3 7 7 C 1.35673 * 116.99537 * 83.24340 * 6 2 1 8 8 C 1.39309 * 119.82229 * 355.51565 * 7 6 2 9 9 C 1.36432 * 120.18655 * 180.25740 * 8 7 6 10 10 C 1.40835 * 119.81361 * 359.47940 * 9 8 7 11 11 C 1.41206 * 120.18425 * 180.30018 * 10 9 8 12 12 H 1.08005 * 119.99753 * 331.09564 * 11 10 9 13 13 C 1.39891 * 120.00446 * 151.10005 * 11 10 9 14 14 N 1.30882 * 119.99942 * 348.97480 * 13 11 10 15 15 Si 1.86803 * 120.00092 * 168.98052 * 13 11 10 16 16 H 1.48491 * 109.47359 * 89.99687 * 15 13 11 17 17 H 1.48500 * 109.46769 * 209.99829 * 15 13 11 18 18 H 1.48497 * 109.47114 * 329.99269 * 15 13 11 19 19 C 1.40834 * 119.63733 * 0.26889 * 10 9 8 20 20 C 1.36432 * 119.81343 * 0.02562 * 19 10 9 21 21 H 1.08993 * 109.46902 * 300.00315 * 1 2 3 22 22 H 1.09001 * 109.46909 * 60.00197 * 1 2 3 23 23 H 1.09002 * 109.46718 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47543 * 305.00021 * 4 2 1 25 25 H 1.08997 * 109.47019 * 65.00697 * 4 2 1 26 26 H 1.00895 * 110.99894 * 56.04449 * 5 4 2 27 27 H 1.00893 * 110.99844 * 180.02562 * 5 4 2 28 28 H 1.08007 * 119.90930 * 0.03614 * 8 7 6 29 29 H 1.08003 * 120.09448 * 179.75044 * 9 8 7 30 30 H 0.96999 * 120.00132 * 180.02562 * 14 13 11 31 31 H 1.07997 * 120.09263 * 180.02562 * 19 10 9 32 32 H 1.08005 * 119.90910 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5040 -0.6175 1.3113 6 8 2.0064 -0.6738 -1.1667 7 6 2.0776 0.0518 -2.3109 8 6 1.6069 1.3628 -2.3304 9 6 1.6701 2.0974 -3.4783 10 6 2.2231 1.5305 -4.6429 11 6 2.2981 2.2859 -5.8336 12 1 1.5713 3.0607 -6.0282 13 6 3.3138 2.0307 -6.7611 14 7 4.3144 1.2513 -6.4379 15 14 3.2421 2.8024 -8.4607 16 1 3.9341 4.1160 -8.4375 17 1 3.9110 1.9077 -9.4391 18 1 1.8241 2.9969 -8.8566 19 6 2.7015 0.2062 -4.6133 20 6 2.6254 -0.5168 -3.4588 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.6053 -0.2616 2.1371 25 1 1.7517 -1.7714 1.2057 26 1 3.7995 0.3469 1.2875 27 1 3.8655 -1.0867 2.1281 28 1 1.1875 1.7978 -1.4351 29 1 1.3011 3.1124 -3.4928 30 1 5.0188 1.0746 -7.0809 31 1 3.1274 -0.2357 -5.5019 32 1 2.9914 -1.5327 -3.4344 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393170551.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:01 Heat of formation + Delta-G solvation = -45.135606 kcal Electronic energy + Delta-G solvation = -14672.549904 eV Core-core repulsion = 12210.957906 eV Total energy + Delta-G solvation = -2461.591998 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.69672 -38.44296 -35.84933 -34.91102 -32.29290 -31.17353 -30.83554 -26.89593 -25.74891 -23.70372 -22.54804 -21.45749 -19.23765 -18.79051 -17.03450 -16.94564 -16.29776 -15.79472 -15.61643 -15.19236 -15.04177 -14.28873 -14.09355 -14.00050 -13.57734 -13.21995 -13.03278 -12.88387 -12.75648 -12.64070 -12.29236 -11.75466 -11.63927 -11.44205 -11.07252 -10.88292 -9.54821 -9.52483 -8.79405 -8.51664 -6.21799 0.98828 1.05747 1.40771 1.52016 1.55867 2.25676 2.66947 2.81184 3.58814 3.72651 3.95994 4.11599 4.30800 4.37335 4.38888 4.52809 4.70591 4.75904 4.93255 5.00852 5.12565 5.24137 5.27973 5.34965 5.63803 5.69818 5.92560 6.09550 6.24293 6.31249 6.61894 6.63166 6.88292 6.99581 7.16569 8.45142 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.059279 B = 0.006171 C = 0.005893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.230527 B = 4536.150314 C = 4750.654674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.076 3.924 3 H 0.059 0.941 4 C 0.073 3.927 5 N -0.863 5.863 6 O -0.321 6.321 7 C 0.019 3.981 8 C -0.172 4.172 9 C -0.201 4.201 10 C 0.049 3.951 11 C -0.501 4.501 12 H 0.074 0.926 13 C 0.029 3.971 14 N -0.844 5.844 15 Si 0.985 3.015 16 H -0.264 1.264 17 H -0.269 1.269 18 H -0.259 1.259 19 C -0.143 4.143 20 C -0.142 4.142 21 H 0.094 0.906 22 H 0.049 0.951 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.343 0.657 27 H 0.353 0.647 28 H 0.128 0.872 29 H 0.105 0.895 30 H 0.285 0.715 31 H 0.109 0.891 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.970 -0.875 10.882 11.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.019 3.981 3 H 0.077 0.923 4 C -0.057 4.057 5 N -0.395 5.395 6 O -0.236 6.236 7 C -0.025 4.025 8 C -0.190 4.190 9 C -0.220 4.220 10 C 0.047 3.953 11 C -0.532 4.532 12 H 0.092 0.908 13 C -0.183 4.183 14 N -0.472 5.472 15 Si 0.806 3.194 16 H -0.189 1.189 17 H -0.193 1.193 18 H -0.183 1.183 19 C -0.162 4.162 20 C -0.161 4.161 21 H 0.113 0.887 22 H 0.068 0.932 23 H 0.085 0.915 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.156 0.844 27 H 0.168 0.832 28 H 0.146 0.854 29 H 0.123 0.877 30 H 0.095 0.905 31 H 0.127 0.873 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.718 -1.579 10.154 10.928 hybrid contribution 0.024 0.973 0.030 0.974 sum -3.694 -0.606 10.184 10.850 Atomic orbital electron populations 1.22309 0.94298 1.03311 1.03215 1.22545 0.94574 0.96342 0.84621 0.92288 1.21850 0.88373 1.01346 0.94148 1.58479 1.10335 1.21490 1.49231 1.85953 1.82752 1.38996 1.15930 1.18707 1.04980 0.91922 0.86884 1.20710 1.05541 0.94019 0.98747 1.20856 1.09022 0.99201 0.92953 1.17947 0.92048 0.92019 0.93294 1.19677 1.12248 1.18044 1.03224 0.90753 1.26723 0.93327 0.94549 1.03704 1.69879 1.08387 1.31979 1.36945 0.85166 0.79520 0.78586 0.76143 1.18859 1.19332 1.18292 1.20922 1.04047 0.94382 0.96862 1.20026 1.04012 0.99792 0.92274 0.88708 0.93176 0.91524 0.90901 0.90499 0.84402 0.83234 0.85441 0.87708 0.90504 0.87296 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.34 9.13 71.98 0.66 -3.69 16 2 C 0.08 2.26 2.41 30.60 0.07 2.33 16 3 H 0.06 1.80 6.35 -2.39 -0.02 1.78 16 4 C 0.07 1.68 6.45 86.30 0.56 2.23 16 5 N -0.86 -20.69 9.57 -186.70 -1.79 -22.48 16 6 O -0.32 -13.05 9.74 -89.90 -0.88 -13.92 16 7 C 0.02 0.91 6.61 22.79 0.15 1.06 16 8 C -0.17 -7.72 8.10 22.11 0.18 -7.54 16 9 C -0.20 -10.09 9.74 22.48 0.22 -9.87 16 10 C 0.05 2.74 5.55 -21.28 -0.12 2.62 16 11 C -0.50 -27.92 9.05 23.40 0.21 -27.71 16 12 H 0.07 3.96 7.87 -2.91 -0.02 3.94 16 13 C 0.03 1.51 5.24 85.23 0.45 1.96 16 14 N -0.84 -46.19 10.86 21.82 0.24 -45.96 16 15 Si 0.98 39.65 29.57 68.60 2.03 41.68 16 16 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 17 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 18 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 19 C -0.14 -7.93 8.60 22.48 0.19 -7.74 16 20 C -0.14 -7.26 9.92 22.11 0.22 -7.04 16 21 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.05 1.45 6.77 -2.39 -0.02 1.44 16 23 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.34 7.79 8.99 -89.70 -0.81 6.99 16 27 H 0.35 6.35 9.08 -89.70 -0.81 5.53 16 28 H 0.13 4.80 5.36 -2.91 -0.02 4.79 16 29 H 0.10 4.89 8.06 -2.91 -0.02 4.86 16 30 H 0.28 14.15 8.30 -92.71 -0.77 13.38 16 31 H 0.11 6.31 6.23 -2.91 -0.02 6.29 16 32 H 0.10 5.02 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -64.33 269.50 1.91 -62.42 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: -0.48 Total: 31.63 kcal Atomic # 6 Polarization: -56.16 SS G_CDS: 2.79 Total: -53.37 kcal Atomic # 7 Polarization: -66.88 SS G_CDS: -1.55 Total: -68.43 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.88 Total: -13.92 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Total: -64.33 1.91 -62.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393170551.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.288 kcal (2) G-P(sol) polarization free energy of solvation -64.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds