Wall clock time and date at job start Mon Mar 30 2020 02:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42907 * 109.46727 * 2 1 4 4 C 1.36005 * 116.99407 * 180.02562 * 3 2 1 5 5 C 1.39363 * 120.08198 * 270.22448 * 4 3 2 6 6 N 1.39966 * 120.08453 * 0.04993 * 5 4 3 7 7 C 1.38681 * 119.82650 * 180.28380 * 5 4 3 8 8 C 1.38267 * 119.97744 * 359.74346 * 7 5 4 9 9 C 1.38209 * 120.16127 * 0.02562 * 8 7 5 10 10 C 1.38334 * 120.17836 * 359.97438 * 9 8 7 11 11 C 1.50700 * 119.98831 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.46869 * 264.99695 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 H 1.09003 * 109.47139 * 60.00363 * 1 2 3 21 21 H 1.09001 * 109.47391 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47434 * 300.00109 * 1 2 3 23 23 H 1.08995 * 109.46778 * 240.00110 * 2 1 3 24 24 H 1.08994 * 109.47031 * 119.99523 * 2 1 3 25 25 H 0.97001 * 119.99678 * 180.23201 * 6 5 4 26 26 H 0.96997 * 120.00180 * 0.23065 * 6 5 4 27 27 H 1.07996 * 120.01448 * 179.72818 * 7 5 4 28 28 H 1.07995 * 119.92048 * 180.02562 * 8 7 5 29 29 H 1.08003 * 119.91243 * 179.97438 * 9 8 7 30 30 H 1.09004 * 109.47210 * 144.99989 * 11 10 9 31 31 H 1.08994 * 109.47551 * 24.99641 * 11 10 9 32 32 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3546 1.5255 -0.0005 5 6 4.0483 1.6122 1.2051 6 7 3.3592 1.5150 2.4195 7 6 5.4223 1.7998 1.1984 8 6 6.1007 1.8949 -0.0026 9 6 5.4128 1.8041 -1.1979 10 6 4.0421 1.6170 -1.1989 11 6 3.2962 1.5192 -2.5046 12 6 2.7498 2.8743 -2.8737 13 1 2.9255 3.7217 -2.2276 14 6 2.0308 3.0336 -4.0395 15 7 1.8172 2.0018 -4.8264 16 14 1.3601 4.7148 -4.5007 17 1 1.7356 5.7012 -3.4561 18 1 1.9314 5.1347 -5.8056 19 1 -0.1194 4.6454 -4.6076 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5137 0.8900 25 1 3.8428 1.5789 3.2579 26 1 2.3982 1.3839 2.4227 27 1 5.9623 1.8717 2.1309 28 1 7.1708 2.0406 -0.0068 29 1 5.9467 1.8794 -2.1337 30 1 2.4735 0.8116 -2.4010 31 1 3.9744 1.1759 -3.2857 32 1 1.3111 2.1138 -5.6464 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396108127.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:34 Heat of formation + Delta-G solvation = -27.456206 kcal Electronic energy + Delta-G solvation = -15046.372039 eV Core-core repulsion = 12585.546678 eV Total energy + Delta-G solvation = -2460.825362 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.45722 -36.63860 -34.45761 -32.82327 -31.31490 -30.25447 -27.57553 -26.77172 -23.35981 -22.50851 -21.26218 -20.34631 -17.25845 -16.56623 -16.24635 -15.81341 -14.83127 -14.48858 -14.37366 -13.85598 -13.63714 -12.63706 -12.37133 -12.23286 -11.93021 -11.65974 -11.41291 -11.17258 -10.94893 -10.78319 -10.56805 -10.34604 -10.05042 -9.54531 -9.26058 -9.02958 -8.31667 -7.69019 -6.94546 -5.94156 -3.94666 1.99301 2.27390 3.36109 3.43091 3.49858 4.11429 4.31744 4.51493 4.71841 5.40508 5.41709 5.50562 5.64685 5.70505 5.81916 5.97826 6.03132 6.18811 6.33020 6.34593 6.53281 6.69265 6.86061 7.08883 7.22237 7.47150 7.63260 7.75022 7.93680 8.02509 8.13326 8.38027 8.48914 9.08630 9.66900 11.16379 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024420 B = 0.010060 C = 0.008212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.323980 B = 2782.510272 C = 3408.894784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.059 3.941 3 O -0.313 6.313 4 C 0.015 3.985 5 C 0.193 3.807 6 N -0.880 5.880 7 C -0.218 4.218 8 C -0.082 4.082 9 C -0.170 4.170 10 C -0.010 4.010 11 C 0.053 3.947 12 C -0.493 4.493 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.894 3.106 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.285 1.285 20 H 0.070 0.930 21 H 0.065 0.935 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.036 0.964 25 H 0.391 0.609 26 H 0.397 0.603 27 H 0.111 0.889 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.031 0.969 31 H 0.026 0.974 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.606 -3.686 11.733 12.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.016 4.016 3 O -0.229 6.229 4 C -0.033 4.033 5 C 0.089 3.911 6 N -0.421 5.421 7 C -0.240 4.240 8 C -0.100 4.100 9 C -0.190 4.190 10 C -0.011 4.011 11 C 0.016 3.984 12 C -0.531 4.531 13 H 0.075 0.925 14 C -0.144 4.144 15 N -0.538 5.538 16 Si 0.722 3.278 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.211 1.211 20 H 0.089 0.911 21 H 0.084 0.916 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.054 0.946 25 H 0.218 0.782 26 H 0.225 0.775 27 H 0.129 0.871 28 H 0.131 0.869 29 H 0.136 0.864 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.398 -3.591 11.518 12.301 hybrid contribution -0.425 0.722 0.027 0.838 sum 1.973 -2.869 11.545 12.059 Atomic orbital electron populations 1.21707 0.93978 1.01592 1.03225 1.22587 0.95040 0.84302 0.99677 1.86177 1.17691 1.25062 1.94012 1.17966 0.83475 1.11420 0.90412 1.18121 0.91404 0.95583 0.85947 1.42304 1.10316 1.84938 1.04504 1.20211 0.91814 1.13944 0.98070 1.20794 0.98830 0.98281 0.92139 1.20813 0.93837 1.06741 0.97570 1.20838 0.93331 0.90354 0.96553 1.18281 0.94741 0.98121 0.87238 1.21002 1.32721 0.93897 1.05485 0.92548 1.24964 0.96326 0.96731 0.96402 1.69969 1.41136 1.29588 1.13102 0.86501 0.78624 0.84496 0.78221 1.19709 1.21116 1.21074 0.91074 0.91612 0.92506 0.92901 0.94593 0.78205 0.77478 0.87072 0.86903 0.86371 0.95050 0.95549 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 10.28 37.16 0.38 -1.84 16 2 C 0.06 1.04 6.45 37.16 0.24 1.27 16 3 O -0.31 -6.62 8.58 -19.76 -0.17 -6.79 16 4 C 0.01 0.32 5.71 -39.08 -0.22 0.09 16 5 C 0.19 3.45 6.77 -83.56 -0.57 2.88 16 6 N -0.88 -12.25 9.09 32.51 0.30 -11.96 16 7 C -0.22 -3.58 9.89 -39.41 -0.39 -3.97 16 8 C -0.08 -1.39 10.04 -39.58 -0.40 -1.79 16 9 C -0.17 -3.44 9.67 -39.56 -0.38 -3.82 16 10 C -0.01 -0.22 5.08 -104.51 -0.53 -0.75 16 11 C 0.05 1.41 4.82 -29.03 -0.14 1.27 16 12 C -0.49 -14.35 9.09 -34.44 -0.31 -14.66 16 13 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 16 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 17 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 20 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 21 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.05 1.00 7.17 -51.93 -0.37 0.63 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.39 4.24 8.85 -40.82 -0.36 3.88 16 26 H 0.40 5.38 8.19 -40.82 -0.33 5.05 16 27 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 28 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 30 H 0.03 0.88 6.42 -51.93 -0.33 0.55 16 31 H 0.03 0.73 8.05 -51.93 -0.42 0.31 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 276.56 15.07 4.17 4.17 Total: -1.00 -31.74 276.56 -6.73 -38.46 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -4.32 Total: 4.87 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -2.42 Total: -19.78 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 1.03 Total: -38.24 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.17 Total: -6.79 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.74 -6.73 -38.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396108127.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.009 kcal (2) G-P(sol) polarization free energy of solvation -31.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds