Wall clock time and date at job start Mon Mar 30 2020 02:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42908 * 109.46991 * 2 1 4 4 C 1.36009 * 116.99693 * 180.02562 * 3 2 1 5 5 C 1.38498 * 120.08664 * 0.02562 * 4 3 2 6 6 C 1.38281 * 120.02069 * 179.97438 * 5 4 3 7 7 C 1.38250 * 120.18029 * 0.02562 * 6 5 4 8 8 C 1.38222 * 120.16015 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00793 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.46869 * 264.99782 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 C 1.38718 * 119.98100 * 0.30153 * 8 7 6 19 19 N 1.39961 * 120.09062 * 179.69960 * 18 8 7 20 20 H 1.08998 * 109.47349 * 60.00272 * 1 2 3 21 21 H 1.09006 * 109.46770 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47057 * 299.99518 * 1 2 3 23 23 H 1.09006 * 109.47214 * 240.00107 * 2 1 3 24 24 H 1.09001 * 109.47677 * 120.00416 * 2 1 3 25 25 H 1.08002 * 119.98967 * 359.97438 * 5 4 3 26 26 H 1.08002 * 119.90808 * 180.02562 * 6 5 4 27 27 H 1.08004 * 119.91932 * 180.02562 * 7 6 5 28 28 H 1.09004 * 109.47210 * 145.00076 * 9 8 7 29 29 H 1.08994 * 109.47551 * 24.99728 * 9 8 7 30 30 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 31 31 H 0.97001 * 120.00207 * 0.02562 * 19 18 8 32 32 H 0.97006 * 119.99856 * 179.97438 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3547 1.5255 -0.0005 5 6 4.2000 0.4284 -0.0016 6 6 5.5706 0.6111 -0.0027 7 6 6.1017 1.8876 -0.0022 8 6 5.2650 2.9878 -0.0011 9 6 5.8475 4.3777 -0.0012 10 6 5.9286 4.8883 1.4144 11 1 5.5923 4.2683 2.2323 12 6 6.4378 6.1448 1.6659 13 7 6.8476 6.8996 0.6700 14 14 6.5454 6.7747 3.4211 15 1 7.8588 6.3977 4.0027 16 1 6.4082 8.2533 3.4256 17 1 5.4549 6.1739 4.2305 18 6 3.8889 2.8122 0.0057 19 7 3.0396 3.9247 0.0132 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 3.7885 -0.5701 -0.0016 26 1 6.2281 -0.2457 -0.0039 27 1 7.1729 2.0254 -0.0035 28 1 5.2110 5.0384 -0.5899 29 1 6.8465 4.3529 -0.4362 30 1 7.2055 7.7837 0.8469 31 1 3.4130 4.8199 0.0131 32 1 2.0776 3.8003 0.0176 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396110879.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:39 Heat of formation + Delta-G solvation = -28.833173 kcal Electronic energy + Delta-G solvation = -14700.615606 eV Core-core repulsion = 12239.730535 eV Total energy + Delta-G solvation = -2460.885071 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.63862 -37.25804 -33.84383 -33.06042 -31.61592 -30.30934 -27.63098 -26.79747 -23.89827 -22.64035 -21.39142 -19.89306 -17.29995 -16.35056 -16.24590 -16.00410 -15.79941 -14.57683 -14.25611 -13.67090 -13.22819 -13.03709 -12.67945 -12.51345 -12.36971 -11.78230 -11.46482 -11.21478 -10.97052 -10.80300 -10.54102 -10.41752 -10.32131 -9.89492 -9.48855 -9.35551 -8.40751 -7.56690 -6.48703 -6.00739 -4.05727 2.19501 2.35426 3.31511 3.37900 3.42597 3.58981 4.42426 4.65443 4.78938 4.98612 5.06609 5.29416 5.31851 5.48037 5.54183 5.73082 5.80476 5.95395 6.05105 6.21603 6.40079 6.69015 6.87922 7.00160 7.27520 7.49511 7.62365 7.77465 7.90382 7.95382 8.34115 8.43860 8.70384 9.00309 9.58263 11.06912 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036846 B = 0.007069 C = 0.006541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.740391 B = 3960.261335 C = 4279.949332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.324 6.324 4 C 0.035 3.965 5 C -0.185 4.185 6 C -0.151 4.151 7 C -0.110 4.110 8 C -0.086 4.086 9 C 0.058 3.942 10 C -0.507 4.507 11 H 0.056 0.944 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.198 3.802 19 N -0.869 5.869 20 H 0.063 0.937 21 H 0.072 0.928 22 H 0.063 0.937 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.113 0.887 26 H 0.109 0.891 27 H 0.117 0.883 28 H 0.025 0.975 29 H 0.029 0.971 30 H 0.261 0.739 31 H 0.408 0.592 32 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.752 -11.510 -1.928 14.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.240 6.240 4 C -0.013 4.013 5 C -0.204 4.204 6 C -0.171 4.171 7 C -0.129 4.129 8 C -0.090 4.090 9 C 0.021 3.979 10 C -0.546 4.546 11 H 0.075 0.925 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.199 1.199 18 C 0.094 3.906 19 N -0.411 5.411 20 H 0.082 0.918 21 H 0.091 0.909 22 H 0.083 0.917 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.131 0.869 26 H 0.127 0.873 27 H 0.135 0.865 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.239 0.761 32 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -8.804 -11.212 -1.966 14.390 hybrid contribution 0.023 0.365 1.032 1.095 sum -8.781 -10.846 -0.934 13.987 Atomic orbital electron populations 1.21753 0.93523 1.02248 1.03230 1.22556 0.95028 0.83145 1.00757 1.85914 1.19615 1.27893 1.90545 1.18350 0.81717 0.92840 1.08352 1.20695 0.94214 0.96402 1.09074 1.20545 0.93854 0.96816 1.05926 1.20774 0.99414 0.91416 1.01296 1.20053 0.89934 0.98613 1.00445 1.18146 0.96081 0.86240 0.97422 1.21103 1.41327 1.00026 0.92111 0.92542 1.25007 0.95423 0.96855 0.97040 1.69960 1.42479 1.10252 1.30726 0.86567 0.78517 0.77802 0.84996 1.20641 1.21269 1.19905 1.17008 0.90203 0.84569 0.98852 1.42390 1.07071 1.06534 1.85069 0.91787 0.90932 0.91746 0.92775 0.92750 0.86921 0.87277 0.86503 0.95686 0.95230 0.92916 0.76071 0.78335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.28 37.16 0.38 -1.06 16 2 C 0.06 0.75 5.46 37.16 0.20 0.95 16 3 O -0.32 -5.40 9.38 -19.77 -0.19 -5.59 16 4 C 0.04 0.67 6.70 -39.08 -0.26 0.40 16 5 C -0.18 -3.19 9.04 -39.47 -0.36 -3.55 16 6 C -0.15 -2.68 10.04 -39.56 -0.40 -3.08 16 7 C -0.11 -2.25 9.67 -39.58 -0.38 -2.63 16 8 C -0.09 -1.94 5.08 -104.45 -0.53 -2.47 16 9 C 0.06 1.49 4.53 -29.03 -0.13 1.36 16 10 C -0.51 -14.10 9.09 -34.44 -0.31 -14.41 16 11 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 13 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 14 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 18 C 0.20 4.18 6.75 -83.56 -0.56 3.61 16 19 N -0.87 -16.88 8.99 32.51 0.29 -16.59 16 20 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 24 H 0.05 0.64 7.67 -51.93 -0.40 0.24 16 25 H 0.11 1.61 6.30 -52.49 -0.33 1.28 16 26 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 27 H 0.12 2.28 8.06 -52.48 -0.42 1.86 16 28 H 0.03 0.66 6.83 -51.93 -0.35 0.31 16 29 H 0.03 0.80 8.05 -51.93 -0.42 0.38 16 30 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.41 8.36 6.94 -40.82 -0.28 8.08 16 32 H 0.39 6.62 8.19 -40.82 -0.33 6.29 16 LS Contribution 272.86 15.07 4.11 4.11 Total: -1.00 -30.04 272.86 -6.69 -36.73 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -4.17 Total: 9.50 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -2.45 Total: -19.34 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 1.03 Total: -41.98 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.19 Total: -5.59 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.04 -6.69 -36.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396110879.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.898 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds