Wall clock time and date at job start Mon Mar 30 2020 02:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42908 * 109.46991 * 2 1 4 4 C 1.36009 * 116.99693 * 180.02562 * 3 2 1 5 5 C 1.38498 * 120.08664 * 0.02562 * 4 3 2 6 6 C 1.38281 * 120.02069 * 179.97438 * 5 4 3 7 7 C 1.38250 * 120.18029 * 0.02562 * 6 5 4 8 8 C 1.38222 * 120.16015 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00793 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.46869 * 264.99782 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 C 1.38718 * 119.98100 * 0.30153 * 8 7 6 19 19 N 1.39961 * 120.09062 * 179.69960 * 18 8 7 20 20 H 1.08998 * 109.47349 * 60.00272 * 1 2 3 21 21 H 1.09006 * 109.46770 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47057 * 299.99518 * 1 2 3 23 23 H 1.09006 * 109.47214 * 240.00107 * 2 1 3 24 24 H 1.09001 * 109.47677 * 120.00416 * 2 1 3 25 25 H 1.08002 * 119.98967 * 359.97438 * 5 4 3 26 26 H 1.08002 * 119.90808 * 180.02562 * 6 5 4 27 27 H 1.08004 * 119.91932 * 180.02562 * 7 6 5 28 28 H 1.09004 * 109.47210 * 145.00076 * 9 8 7 29 29 H 1.08994 * 109.47551 * 24.99728 * 9 8 7 30 30 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 31 31 H 0.97001 * 120.00207 * 0.02562 * 19 18 8 32 32 H 0.97006 * 119.99856 * 179.97438 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3547 1.5255 -0.0005 5 6 4.2000 0.4284 -0.0016 6 6 5.5706 0.6111 -0.0027 7 6 6.1017 1.8876 -0.0022 8 6 5.2650 2.9878 -0.0011 9 6 5.8475 4.3777 -0.0012 10 6 5.9286 4.8883 1.4144 11 1 5.5923 4.2683 2.2323 12 6 6.4378 6.1448 1.6659 13 7 6.8476 6.8996 0.6700 14 14 6.5454 6.7747 3.4211 15 1 7.8588 6.3977 4.0027 16 1 6.4082 8.2533 3.4256 17 1 5.4549 6.1739 4.2305 18 6 3.8889 2.8122 0.0057 19 7 3.0396 3.9247 0.0132 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 3.7885 -0.5701 -0.0016 26 1 6.2281 -0.2457 -0.0039 27 1 7.1729 2.0254 -0.0035 28 1 5.2110 5.0384 -0.5899 29 1 6.8465 4.3529 -0.4362 30 1 7.2055 7.7837 0.8469 31 1 3.4130 4.8199 0.0131 32 1 2.0776 3.8003 0.0176 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396110879.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:39 Heat of formation + Delta-G solvation = -47.738301 kcal Electronic energy + Delta-G solvation = -14701.435394 eV Core-core repulsion = 12239.730535 eV Total energy + Delta-G solvation = -2461.704859 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.03800 -38.65040 -35.49037 -34.93339 -32.86292 -31.82675 -29.15534 -28.57023 -25.50616 -24.05284 -22.84843 -21.38033 -18.71918 -18.40558 -17.84939 -17.44452 -16.88264 -16.53017 -15.63847 -15.09086 -14.64788 -14.55215 -14.22991 -14.01956 -13.39519 -13.23840 -13.13439 -12.80689 -12.63539 -12.42216 -12.27298 -11.93007 -11.63705 -11.37536 -11.33595 -11.27753 -10.57565 -9.11951 -8.21495 -7.94094 -6.28815 0.67180 0.85749 1.40173 1.40491 1.51955 2.39551 2.42223 3.10208 3.13534 3.27758 4.05788 4.14113 4.23786 4.35906 4.42879 4.51166 4.68401 4.72752 4.96064 5.00467 5.11110 5.24754 5.28947 5.41679 5.43723 5.69732 5.77440 6.03602 6.05363 6.24474 6.48369 6.82439 6.91563 7.19864 7.39248 8.91672 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036846 B = 0.007069 C = 0.006541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.740391 B = 3960.261335 C = 4279.949332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.048 3.952 3 O -0.336 6.336 4 C 0.038 3.962 5 C -0.176 4.176 6 C -0.142 4.142 7 C -0.127 4.127 8 C -0.120 4.120 9 C 0.071 3.929 10 C -0.517 4.517 11 H 0.047 0.953 12 C 0.009 3.991 13 N -0.928 5.928 14 Si 0.960 3.040 15 H -0.274 1.274 16 H -0.279 1.279 17 H -0.271 1.271 18 C 0.176 3.824 19 N -0.868 5.868 20 H 0.061 0.939 21 H 0.101 0.899 22 H 0.059 0.941 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.151 0.849 26 H 0.145 0.855 27 H 0.114 0.886 28 H 0.007 0.993 29 H 0.001 0.999 30 H 0.264 0.736 31 H 0.399 0.601 32 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.807 -13.689 -1.081 16.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.027 4.027 3 O -0.252 6.252 4 C -0.011 4.011 5 C -0.195 4.195 6 C -0.162 4.162 7 C -0.146 4.146 8 C -0.125 4.125 9 C 0.034 3.966 10 C -0.556 4.556 11 H 0.065 0.935 12 C -0.189 4.189 13 N -0.568 5.568 14 Si 0.785 3.215 15 H -0.199 1.199 16 H -0.205 1.205 17 H -0.195 1.195 18 C 0.071 3.929 19 N -0.410 5.410 20 H 0.080 0.920 21 H 0.120 0.880 22 H 0.078 0.922 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.169 0.831 26 H 0.163 0.837 27 H 0.132 0.868 28 H 0.025 0.975 29 H 0.020 0.980 30 H 0.073 0.927 31 H 0.229 0.771 32 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -9.883 -13.417 -1.122 16.702 hybrid contribution 0.274 0.922 0.720 1.201 sum -9.609 -12.495 -0.402 15.768 Atomic orbital electron populations 1.21782 0.91526 1.04064 1.02921 1.22970 0.96680 0.81193 1.01832 1.85922 1.18185 1.30879 1.90176 1.18440 0.83164 0.92311 1.07157 1.21140 0.93818 0.97676 1.06895 1.20894 0.94786 0.96550 1.03958 1.20893 0.99257 0.92294 1.02114 1.19835 0.91251 0.97389 1.03989 1.17849 0.94328 0.88432 0.96028 1.21295 1.41216 1.00244 0.92801 0.93491 1.25820 0.94946 0.97009 1.01172 1.70073 1.43198 1.10661 1.32856 0.85520 0.78641 0.77381 0.79923 1.19931 1.20481 1.19523 1.17175 0.89869 0.86021 0.99813 1.42318 1.07532 1.05904 1.85230 0.91993 0.88016 0.92206 0.91423 0.91743 0.83098 0.83683 0.86759 0.97505 0.98021 0.92664 0.77103 0.77162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 10.28 71.98 0.74 -1.60 16 2 C 0.05 1.02 5.46 71.98 0.39 1.41 16 3 O -0.34 -10.48 9.38 -93.65 -0.88 -11.35 16 4 C 0.04 1.36 6.70 22.59 0.15 1.51 16 5 C -0.18 -5.51 9.04 22.34 0.20 -5.31 16 6 C -0.14 -4.67 10.04 22.28 0.22 -4.45 16 7 C -0.13 -5.17 9.67 22.27 0.22 -4.96 16 8 C -0.12 -5.56 5.08 -19.75 -0.10 -5.66 16 9 C 0.07 3.82 4.53 29.10 0.13 3.95 16 10 C -0.52 -29.64 9.09 25.60 0.23 -29.41 16 11 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 12 C 0.01 0.50 5.46 84.66 0.46 0.96 16 13 N -0.93 -55.50 13.29 21.45 0.28 -55.22 16 14 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 15 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 17 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 18 C 0.18 7.45 6.75 38.22 0.26 7.71 16 19 N -0.87 -34.51 8.99 -51.05 -0.46 -34.97 16 20 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 21 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 22 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.07 1.27 7.66 -2.38 -0.02 1.26 16 24 H 0.06 1.26 7.67 -2.39 -0.02 1.24 16 25 H 0.15 3.53 6.30 -2.91 -0.02 3.51 16 26 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 27 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 28 H 0.01 0.38 6.83 -2.38 -0.02 0.37 16 29 H 0.00 0.09 8.05 -2.39 -0.02 0.07 16 30 H 0.26 14.88 8.31 -92.70 -0.77 14.11 16 31 H 0.40 17.15 6.94 -92.71 -0.64 16.50 16 32 H 0.40 13.70 8.19 -92.70 -0.76 12.94 16 Total: -1.00 -65.52 272.86 3.61 -61.91 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: -0.27 Total: 28.73 kcal Atomic # 6 Polarization: -38.75 SS G_CDS: 2.91 Total: -35.84 kcal Atomic # 7 Polarization: -90.01 SS G_CDS: -0.17 Total: -90.19 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -0.88 Total: -11.35 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -65.52 3.61 -61.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396110879.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.172 kcal (2) G-P(sol) polarization free energy of solvation -65.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds