Wall clock time and date at job start Mon Mar 30 2020 02:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42905 * 109.46837 * 2 1 4 4 C 1.36013 * 116.99948 * 179.97438 * 3 2 1 5 5 C 1.38506 * 120.07611 * 359.97438 * 4 3 2 6 6 C 1.38281 * 120.01374 * 180.02562 * 5 4 3 7 7 C 1.50700 * 119.91033 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46869 * 90.00229 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48496 * 109.47341 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46983 * 120.00379 * 12 10 8 15 15 H 1.48503 * 109.47491 * 240.00192 * 12 10 8 16 16 C 1.38258 * 120.18363 * 0.27999 * 6 5 4 17 17 C 1.38231 * 120.15518 * 359.44572 * 16 6 5 18 18 C 1.38716 * 119.97788 * 0.54949 * 17 16 6 19 19 N 1.39970 * 120.08587 * 179.70055 * 18 17 16 20 20 H 1.08998 * 109.46637 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47153 * 299.99826 * 1 2 3 22 22 H 1.09002 * 109.46821 * 60.00071 * 1 2 3 23 23 H 1.08997 * 109.47153 * 240.00174 * 2 1 3 24 24 H 1.09001 * 109.47268 * 119.99636 * 2 1 3 25 25 H 1.07992 * 119.99291 * 0.04631 * 5 4 3 26 26 H 1.09004 * 109.47210 * 330.00522 * 7 6 5 27 27 H 1.08994 * 109.47551 * 210.00174 * 7 6 5 28 28 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 29 29 H 1.08000 * 119.92098 * 179.72466 * 16 6 5 30 30 H 1.08001 * 120.00476 * 180.27486 * 17 16 6 31 31 H 0.97009 * 119.99863 * 180.02562 * 19 18 17 32 32 H 0.96995 * 119.99921 * 0.02850 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3548 1.5256 0.0005 5 6 4.2000 0.4284 0.0016 6 6 5.5707 0.6111 0.0027 7 6 6.4881 -0.5844 0.0044 8 6 6.7953 -0.9840 -1.4159 9 1 6.3691 -0.4275 -2.2376 10 6 7.6254 -2.0560 -1.6663 11 7 8.1447 -2.7333 -0.6657 12 14 8.0122 -2.5464 -3.4267 13 1 7.3092 -1.6313 -4.3614 14 1 9.4769 -2.4571 -3.6550 15 1 7.5585 -3.9405 -3.6634 16 6 6.1018 1.8876 0.0086 17 6 5.2650 2.9878 0.0018 18 6 3.8890 2.8122 0.0006 19 7 3.0396 3.9247 0.0002 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.7885 -0.5701 0.0012 26 1 6.0028 -1.4142 0.5184 27 1 7.4149 -0.3305 0.5189 28 1 8.7284 -3.4878 -0.8419 29 1 7.1729 2.0254 0.0139 30 1 5.6825 3.9839 0.0019 31 1 2.0776 3.8004 -0.0003 32 1 3.4130 4.8199 0.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396113084.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:42 Heat of formation + Delta-G solvation = -50.376289 kcal Electronic energy + Delta-G solvation = -14570.268961 eV Core-core repulsion = 12108.449710 eV Total energy + Delta-G solvation = -2461.819251 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.05940 -38.54131 -36.16414 -34.65298 -32.58492 -31.54194 -30.46910 -27.85648 -25.23386 -24.49404 -22.53079 -21.88588 -18.70750 -18.40420 -17.80731 -17.47845 -16.95262 -16.55937 -15.67263 -14.97174 -14.66623 -14.61102 -14.42032 -14.17583 -13.38070 -13.30659 -13.17670 -12.95716 -12.63660 -12.49393 -12.18601 -12.05558 -11.76438 -11.56366 -11.32981 -10.90121 -10.59991 -9.33837 -8.28421 -7.90284 -6.31652 0.59241 0.81606 1.39062 1.39550 1.53437 2.33873 2.40593 3.06270 3.11452 3.14852 4.00008 4.07814 4.17474 4.34868 4.41012 4.48838 4.60180 4.74680 4.97011 4.97395 5.03907 5.19557 5.32710 5.33596 5.38723 5.59834 5.77130 5.95922 6.15663 6.22646 6.36135 6.81128 6.83113 7.18867 7.36726 8.90830 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027214 B = 0.007483 C = 0.006464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.634065 B = 3740.933355 C = 4330.423979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.048 3.952 3 O -0.325 6.325 4 C 0.044 3.956 5 C -0.173 4.173 6 C -0.086 4.086 7 C 0.063 3.937 8 C -0.525 4.525 9 H 0.052 0.948 10 C 0.003 3.997 11 N -0.931 5.931 12 Si 0.965 3.035 13 H -0.266 1.266 14 H -0.275 1.275 15 H -0.275 1.275 16 C -0.122 4.122 17 C -0.160 4.160 18 C 0.171 3.829 19 N -0.866 5.866 20 H 0.094 0.906 21 H 0.069 0.931 22 H 0.067 0.933 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.116 0.884 26 H -0.002 1.002 27 H 0.003 0.997 28 H 0.265 0.735 29 H 0.118 0.882 30 H 0.153 0.847 31 H 0.403 0.597 32 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.903 10.056 0.919 16.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.027 4.027 3 O -0.240 6.240 4 C -0.004 4.004 5 C -0.193 4.193 6 C -0.088 4.088 7 C 0.026 3.974 8 C -0.563 4.563 9 H 0.070 0.930 10 C -0.194 4.194 11 N -0.572 5.572 12 Si 0.789 3.211 13 H -0.191 1.191 14 H -0.200 1.200 15 H -0.201 1.201 16 C -0.141 4.141 17 C -0.183 4.183 18 C 0.067 3.933 19 N -0.410 5.410 20 H 0.113 0.887 21 H 0.088 0.912 22 H 0.086 0.914 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.133 0.867 26 H 0.016 0.984 27 H 0.022 0.978 28 H 0.074 0.926 29 H 0.136 0.864 30 H 0.171 0.829 31 H 0.232 0.768 32 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -12.933 10.014 0.961 16.386 hybrid contribution 0.536 -0.766 -0.637 1.131 sum -12.398 9.248 0.324 15.471 Atomic orbital electron populations 1.21751 0.90377 1.04038 1.03494 1.22907 0.97295 0.81479 1.01066 1.85861 1.17983 1.30074 1.90078 1.18446 0.82730 0.92710 1.06546 1.20894 0.93556 0.97606 1.07228 1.19977 0.93712 0.95876 0.99225 1.18003 0.92714 0.90601 0.96089 1.21443 1.28591 1.13727 0.92586 0.92986 1.25931 0.95568 0.96190 1.01748 1.70093 1.33307 1.20837 1.32943 0.85406 0.78193 0.78172 0.79346 1.19069 1.19995 1.20094 1.20824 0.99792 0.91540 1.01904 1.20604 0.90206 0.99575 1.07873 1.17088 0.90539 0.85406 1.00249 1.42049 1.07785 1.04810 1.86329 0.88690 0.91151 0.91392 0.93093 0.92645 0.86653 0.98410 0.97839 0.92590 0.86435 0.82912 0.76791 0.76288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 10.28 71.98 0.74 -1.85 16 2 C 0.05 1.29 5.46 71.98 0.39 1.68 16 3 O -0.32 -10.22 9.38 -93.69 -0.88 -11.10 16 4 C 0.04 1.60 6.70 22.59 0.15 1.75 16 5 C -0.17 -7.36 8.69 22.34 0.19 -7.17 16 6 C -0.09 -4.03 5.07 -19.85 -0.10 -4.13 16 7 C 0.06 3.51 5.10 29.10 0.15 3.66 16 8 C -0.53 -31.02 9.09 25.60 0.23 -30.79 16 9 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 10 C 0.00 0.20 5.46 84.66 0.46 0.66 16 11 N -0.93 -57.19 13.29 21.45 0.28 -56.90 16 12 Si 0.96 45.14 29.54 68.60 2.03 47.17 16 13 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 14 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 15 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 16 C -0.12 -4.96 9.69 22.27 0.22 -4.74 16 17 C -0.16 -5.26 9.89 22.38 0.22 -5.04 16 18 C 0.17 5.53 6.77 38.21 0.26 5.79 16 19 N -0.87 -20.11 9.09 -51.06 -0.46 -20.57 16 20 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 22 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.05 1.47 7.67 -2.39 -0.02 1.45 16 24 H 0.06 1.52 7.66 -2.39 -0.02 1.50 16 25 H 0.12 4.88 6.30 -2.91 -0.02 4.86 16 26 H 0.00 -0.14 8.08 -2.38 -0.02 -0.16 16 27 H 0.00 0.19 8.08 -2.39 -0.02 0.18 16 28 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 29 H 0.12 4.68 8.06 -2.91 -0.02 4.65 16 30 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 31 H 0.40 8.64 8.19 -92.70 -0.76 7.88 16 32 H 0.41 7.04 8.85 -92.71 -0.82 6.22 16 Total: -1.00 -68.30 276.25 3.43 -64.86 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -0.45 Total: 16.72 kcal Atomic # 6 Polarization: -43.09 SS G_CDS: 2.92 Total: -40.18 kcal Atomic # 7 Polarization: -77.29 SS G_CDS: -0.18 Total: -77.47 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -0.88 Total: -11.10 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -68.30 3.43 -64.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396113084.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.485 kcal (2) G-P(sol) polarization free energy of solvation -68.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds