Wall clock time and date at job start Mon Mar 30 2020 02:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47172 * 2 1 4 4 N 1.46901 * 109.46868 * 240.00051 * 2 1 3 5 5 C 1.53000 * 109.47156 * 120.00244 * 2 1 3 6 6 O 1.42894 * 109.47041 * 55.00049 * 5 2 1 7 7 C 1.35684 * 117.00044 * 180.02562 * 6 5 2 8 8 C 1.39313 * 119.81172 * 359.72823 * 7 6 5 9 9 C 1.36439 * 120.18011 * 179.76208 * 8 7 6 10 10 C 1.40834 * 119.81306 * 0.50539 * 9 8 7 11 11 C 1.41212 * 120.18180 * 179.71988 * 10 9 8 12 12 H 1.07999 * 119.99869 * 24.57286 * 11 10 9 13 13 C 1.39891 * 120.00354 * 204.57274 * 11 10 9 14 14 N 1.30883 * 119.99586 * 17.93463 * 13 11 10 15 15 Si 1.86795 * 120.00067 * 197.93456 * 13 11 10 16 16 H 1.48500 * 109.47461 * 60.00087 * 15 13 11 17 17 H 1.48506 * 109.47181 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47313 * 299.99954 * 15 13 11 19 19 C 1.40835 * 119.64146 * 359.74433 * 10 9 8 20 20 C 1.36438 * 119.80816 * 359.97438 * 19 10 9 21 21 H 1.09005 * 109.47350 * 59.99845 * 1 2 3 22 22 H 1.09000 * 109.47172 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47099 * 299.99856 * 1 2 3 24 24 H 1.00900 * 111.00608 * 296.04540 * 4 2 1 25 25 H 1.00903 * 111.00055 * 60.00392 * 4 2 1 26 26 H 1.09002 * 109.47038 * 174.99764 * 5 2 1 27 27 H 1.08999 * 109.46878 * 294.99528 * 5 2 1 28 28 H 1.08002 * 119.90906 * 0.02562 * 8 7 6 29 29 H 1.08002 * 120.09437 * 180.25056 * 9 8 7 30 30 H 0.96997 * 119.99477 * 180.02562 * 14 13 11 31 31 H 1.07992 * 120.09605 * 179.97438 * 19 10 9 32 32 H 1.08004 * 119.90616 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0400 -0.7213 1.2492 6 8 1.4702 -2.0304 1.3093 7 6 1.8221 -2.8074 2.3645 8 6 2.7067 -2.3161 3.3220 9 6 3.0618 -3.0893 4.3886 10 6 2.5397 -4.3912 4.5144 11 6 2.9066 -5.2003 5.6120 12 1 3.2399 -4.7434 6.5321 13 6 2.8384 -6.5936 5.5077 14 7 2.7818 -7.1596 4.3289 15 14 2.8280 -7.6463 7.0508 16 1 1.6517 -7.2910 7.8846 17 1 2.7515 -9.0801 6.6714 18 1 4.0733 -7.4050 7.8231 19 6 1.6501 -4.8821 3.5391 20 6 1.3006 -4.0939 2.4817 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.7502 -1.6648 -1.1910 25 1 1.6961 -0.2349 -2.0386 26 1 3.1263 -0.7995 1.2055 27 1 1.7517 -0.1583 2.1369 28 1 3.1092 -1.3189 3.2219 29 1 3.7446 -2.7055 5.1322 30 1 2.7341 -8.1257 4.2567 31 1 1.2456 -5.8795 3.6281 32 1 0.6188 -4.4689 1.7327 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403402429.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:07 Heat of formation + Delta-G solvation = -31.313307 kcal Electronic energy + Delta-G solvation = -14536.259790 eV Core-core repulsion = 12075.267171 eV Total energy + Delta-G solvation = -2460.992618 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.91769 -36.87039 -35.14945 -33.21039 -29.85669 -29.07071 -28.71228 -26.57748 -24.67354 -21.59749 -20.70405 -19.83706 -17.37321 -17.05412 -15.89653 -15.37458 -15.10178 -14.49259 -13.94594 -13.71492 -13.13908 -12.97673 -12.74286 -12.26194 -12.10818 -11.87479 -11.33060 -11.21084 -11.13629 -10.93046 -10.65747 -10.52833 -9.92072 -9.79206 -9.31493 -8.98740 -8.65667 -7.61149 -6.99530 -6.69813 -4.22775 2.81628 2.98391 3.09228 3.11856 3.24686 3.96895 4.17153 4.60449 4.66055 4.96614 5.22603 5.39738 5.67421 5.74985 5.77269 5.96859 5.99413 6.13512 6.25019 6.29926 6.75125 7.01058 7.14464 7.18993 7.22370 7.49818 7.53374 7.58637 7.83549 8.02822 8.23283 8.48694 8.68342 8.92535 9.01877 10.24693 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.072748 B = 0.005622 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.796087 B = 4979.561949 C = 5130.088195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.092 3.908 3 H 0.088 0.912 4 N -0.844 5.844 5 C 0.072 3.928 6 O -0.327 6.327 7 C -0.005 4.005 8 C -0.167 4.167 9 C -0.198 4.198 10 C 0.087 3.913 11 C -0.465 4.465 12 H 0.076 0.924 13 C 0.075 3.925 14 N -0.800 5.800 15 Si 0.907 3.093 16 H -0.264 1.264 17 H -0.279 1.279 18 H -0.266 1.266 19 C -0.134 4.134 20 C -0.121 4.121 21 H 0.048 0.952 22 H 0.067 0.933 23 H 0.058 0.942 24 H 0.351 0.649 25 H 0.335 0.665 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.280 0.720 31 H 0.125 0.875 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.121 7.694 -5.114 9.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.020 4.020 3 H 0.106 0.894 4 N -0.373 5.373 5 C -0.005 4.005 6 O -0.243 6.243 7 C -0.048 4.048 8 C -0.186 4.186 9 C -0.217 4.217 10 C 0.085 3.915 11 C -0.495 4.495 12 H 0.094 0.906 13 C -0.141 4.141 14 N -0.426 5.426 15 Si 0.732 3.268 16 H -0.189 1.189 17 H -0.204 1.204 18 H -0.191 1.191 19 C -0.154 4.154 20 C -0.140 4.140 21 H 0.067 0.933 22 H 0.086 0.914 23 H 0.077 0.923 24 H 0.165 0.835 25 H 0.147 0.853 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.091 0.909 31 H 0.143 0.857 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.504 7.585 -5.102 9.478 hybrid contribution -0.769 -0.532 0.604 1.114 sum -3.273 7.053 -4.497 8.982 Atomic orbital electron populations 1.22539 0.97304 1.03005 1.01428 1.21500 0.92934 0.97388 0.90178 0.89426 1.58915 1.67084 1.07781 1.03567 1.22504 0.97935 0.83814 0.96212 1.85742 1.68354 1.24981 1.45262 1.18567 1.03840 0.92261 0.90136 1.20422 1.01726 0.99134 0.97297 1.20567 1.04859 0.97008 0.99312 1.17586 0.89940 0.91180 0.92786 1.19425 1.39971 0.90625 0.99480 0.90628 1.25867 0.92417 0.98809 0.97040 1.69832 1.36108 1.12266 1.24385 0.86388 0.79882 0.78337 0.82195 1.18912 1.20401 1.19110 1.20965 0.99329 0.99767 0.95301 1.19812 1.02620 0.91792 0.99783 0.93262 0.91439 0.92271 0.83528 0.85316 0.92377 0.92982 0.88821 0.88791 0.90907 0.85739 0.88646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 9.28 37.16 0.34 -1.85 16 2 C 0.09 1.18 3.81 -67.71 -0.26 0.92 16 3 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 4 N -0.84 -10.67 9.25 -4.67 -0.04 -10.71 16 5 C 0.07 1.17 4.56 37.16 0.17 1.34 16 6 O -0.33 -6.54 8.76 -18.75 -0.16 -6.71 16 7 C 0.00 -0.11 6.71 -38.78 -0.26 -0.37 16 8 C -0.17 -3.86 8.96 -39.83 -0.36 -4.21 16 9 C -0.20 -4.95 9.74 -39.25 -0.38 -5.33 16 10 C 0.09 2.37 5.57 -106.80 -0.60 1.77 16 11 C -0.47 -12.49 9.04 -37.83 -0.34 -12.84 16 12 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 13 C 0.08 1.91 5.13 -17.34 -0.09 1.83 16 14 N -0.80 -20.94 10.96 55.54 0.61 -20.33 16 15 Si 0.91 18.85 29.60 -169.99 -5.03 13.82 16 16 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 17 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 19 C -0.13 -3.54 8.64 -39.25 -0.34 -3.88 16 20 C -0.12 -2.95 9.92 -39.83 -0.40 -3.35 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.07 0.93 7.56 -51.93 -0.39 0.54 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.35 4.83 8.54 -39.29 -0.34 4.49 16 25 H 0.33 3.34 9.04 -39.29 -0.36 2.99 16 26 H 0.06 0.99 7.64 -51.93 -0.40 0.59 16 27 H 0.05 0.81 7.66 -51.93 -0.40 0.41 16 28 H 0.09 1.90 6.27 -52.49 -0.33 1.57 16 29 H 0.09 2.20 8.06 -52.49 -0.42 1.78 16 30 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 31 H 0.12 3.35 6.16 -52.49 -0.32 3.03 16 32 H 0.10 2.13 8.06 -52.48 -0.42 1.71 16 LS Contribution 270.87 15.07 4.08 4.08 Total: -1.00 -28.04 270.87 -7.24 -35.29 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -4.19 Total: 10.55 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: -2.50 Total: -25.99 kcal Atomic # 7 Polarization: -31.60 SS G_CDS: 0.57 Total: -31.04 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.16 Total: -6.71 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.04 -7.24 -35.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403402429.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.974 kcal (2) G-P(sol) polarization free energy of solvation -28.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds