Wall clock time and date at job start Mon Mar 30 2020 02:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47172 * 2 1 4 4 N 1.46901 * 109.46868 * 240.00051 * 2 1 3 5 5 C 1.53000 * 109.47156 * 120.00244 * 2 1 3 6 6 O 1.42894 * 109.47041 * 55.00049 * 5 2 1 7 7 C 1.35684 * 117.00044 * 180.02562 * 6 5 2 8 8 C 1.39313 * 119.81172 * 359.72823 * 7 6 5 9 9 C 1.36439 * 120.18011 * 179.76208 * 8 7 6 10 10 C 1.40834 * 119.81306 * 0.50539 * 9 8 7 11 11 C 1.41212 * 120.18180 * 179.71988 * 10 9 8 12 12 H 1.07999 * 119.99869 * 24.57286 * 11 10 9 13 13 C 1.39891 * 120.00354 * 204.57274 * 11 10 9 14 14 N 1.30883 * 119.99586 * 17.93463 * 13 11 10 15 15 Si 1.86795 * 120.00067 * 197.93456 * 13 11 10 16 16 H 1.48500 * 109.47461 * 60.00087 * 15 13 11 17 17 H 1.48506 * 109.47181 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47313 * 299.99954 * 15 13 11 19 19 C 1.40835 * 119.64146 * 359.74433 * 10 9 8 20 20 C 1.36438 * 119.80816 * 359.97438 * 19 10 9 21 21 H 1.09005 * 109.47350 * 59.99845 * 1 2 3 22 22 H 1.09000 * 109.47172 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47099 * 299.99856 * 1 2 3 24 24 H 1.00900 * 111.00608 * 296.04540 * 4 2 1 25 25 H 1.00903 * 111.00055 * 60.00392 * 4 2 1 26 26 H 1.09002 * 109.47038 * 174.99764 * 5 2 1 27 27 H 1.08999 * 109.46878 * 294.99528 * 5 2 1 28 28 H 1.08002 * 119.90906 * 0.02562 * 8 7 6 29 29 H 1.08002 * 120.09437 * 180.25056 * 9 8 7 30 30 H 0.96997 * 119.99477 * 180.02562 * 14 13 11 31 31 H 1.07992 * 120.09605 * 179.97438 * 19 10 9 32 32 H 1.08004 * 119.90616 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0400 -0.7213 1.2492 6 8 1.4702 -2.0304 1.3093 7 6 1.8221 -2.8074 2.3645 8 6 2.7067 -2.3161 3.3220 9 6 3.0618 -3.0893 4.3886 10 6 2.5397 -4.3912 4.5144 11 6 2.9066 -5.2003 5.6120 12 1 3.2399 -4.7434 6.5321 13 6 2.8384 -6.5936 5.5077 14 7 2.7818 -7.1596 4.3289 15 14 2.8280 -7.6463 7.0508 16 1 1.6517 -7.2910 7.8846 17 1 2.7515 -9.0801 6.6714 18 1 4.0733 -7.4050 7.8231 19 6 1.6501 -4.8821 3.5391 20 6 1.3006 -4.0939 2.4817 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.7502 -1.6648 -1.1910 25 1 1.6961 -0.2349 -2.0386 26 1 3.1263 -0.7995 1.2055 27 1 1.7517 -0.1583 2.1369 28 1 3.1092 -1.3189 3.2219 29 1 3.7446 -2.7055 5.1322 30 1 2.7341 -8.1257 4.2567 31 1 1.2456 -5.8795 3.6281 32 1 0.6188 -4.4689 1.7327 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403402429.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:06 Heat of formation + Delta-G solvation = -49.079602 kcal Electronic energy + Delta-G solvation = -14537.030194 eV Core-core repulsion = 12075.267171 eV Total energy + Delta-G solvation = -2461.763022 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.58436 -38.51297 -36.48405 -35.06483 -31.72006 -30.90626 -29.87153 -27.87178 -26.52664 -23.24189 -22.57152 -21.21806 -19.24809 -18.70099 -17.22882 -16.87403 -16.65484 -16.04926 -15.73533 -15.01301 -14.80080 -14.30252 -14.04073 -13.95513 -13.77488 -13.48700 -12.96902 -12.78901 -12.69764 -12.42229 -12.18810 -11.88128 -11.72156 -11.53368 -11.16767 -10.85665 -9.63634 -9.55211 -8.90796 -8.58801 -6.22066 0.96647 1.03541 1.40066 1.51037 1.55475 2.23473 2.65546 2.74399 3.61153 3.71619 3.88369 4.17887 4.31094 4.34930 4.40257 4.51871 4.66725 4.87311 4.90560 5.00370 5.07949 5.21798 5.29039 5.32631 5.59516 5.66284 5.90470 6.06076 6.20960 6.27546 6.57320 6.61770 6.81780 6.95668 7.11240 8.37725 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.072748 B = 0.005622 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.796087 B = 4979.561949 C = 5130.088195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.097 3.903 3 H 0.114 0.886 4 N -0.851 5.851 5 C 0.062 3.938 6 O -0.328 6.328 7 C 0.004 3.996 8 C -0.168 4.168 9 C -0.209 4.209 10 C 0.054 3.946 11 C -0.502 4.502 12 H 0.075 0.925 13 C 0.034 3.966 14 N -0.832 5.832 15 Si 0.982 3.018 16 H -0.261 1.261 17 H -0.268 1.268 18 H -0.260 1.260 19 C -0.153 4.153 20 C -0.133 4.133 21 H 0.072 0.928 22 H 0.044 0.956 23 H 0.061 0.939 24 H 0.343 0.657 25 H 0.351 0.649 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.124 0.876 29 H 0.103 0.897 30 H 0.287 0.713 31 H 0.110 0.890 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.212 8.821 -5.393 10.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.014 4.014 3 H 0.131 0.869 4 N -0.381 5.381 5 C -0.014 4.014 6 O -0.244 6.244 7 C -0.040 4.040 8 C -0.186 4.186 9 C -0.229 4.229 10 C 0.052 3.948 11 C -0.532 4.532 12 H 0.093 0.907 13 C -0.180 4.180 14 N -0.459 5.459 15 Si 0.803 3.197 16 H -0.185 1.185 17 H -0.193 1.193 18 H -0.184 1.184 19 C -0.173 4.173 20 C -0.151 4.151 21 H 0.091 0.909 22 H 0.063 0.937 23 H 0.080 0.920 24 H 0.156 0.844 25 H 0.165 0.835 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.142 0.858 29 H 0.122 0.878 30 H 0.098 0.902 31 H 0.128 0.872 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.597 8.746 -5.410 10.607 hybrid contribution -0.743 -0.730 0.548 1.177 sum -3.340 8.017 -4.862 9.953 Atomic orbital electron populations 1.22490 0.96602 1.01939 1.02786 1.21534 0.93425 0.97883 0.88603 0.86867 1.58914 1.67332 1.07502 1.04387 1.22863 0.97676 0.82171 0.98676 1.85762 1.68395 1.26509 1.43722 1.18655 1.02588 0.92169 0.90549 1.20709 1.01278 1.00253 0.96386 1.20796 1.05083 0.96718 1.00276 1.17949 0.90881 0.92453 0.93564 1.19691 1.41864 0.91906 0.99709 0.90650 1.26732 0.91334 0.99560 1.00333 1.69888 1.36541 1.12994 1.26480 0.85252 0.80001 0.76666 0.77762 1.18530 1.19261 1.18425 1.20907 1.00223 0.99688 0.96448 1.19990 1.03021 0.92491 0.99628 0.90879 0.93655 0.92014 0.84402 0.83478 0.93010 0.91994 0.85778 0.87842 0.90200 0.87201 0.87228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.81 9.28 71.98 0.67 -3.14 16 2 C 0.10 2.20 3.81 44.91 0.17 2.38 16 3 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 4 N -0.85 -19.45 9.25 -168.68 -1.56 -21.01 16 5 C 0.06 1.87 4.56 71.98 0.33 2.20 16 6 O -0.33 -12.63 8.76 -90.02 -0.79 -13.42 16 7 C 0.00 0.20 6.71 22.79 0.15 0.35 16 8 C -0.17 -7.58 8.96 22.11 0.20 -7.38 16 9 C -0.21 -10.52 9.74 22.48 0.22 -10.30 16 10 C 0.05 2.98 5.57 -21.28 -0.12 2.86 16 11 C -0.50 -27.63 9.04 23.40 0.21 -27.42 16 12 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 13 C 0.03 1.76 5.13 85.23 0.44 2.20 16 14 N -0.83 -44.49 10.96 21.82 0.24 -44.25 16 15 Si 0.98 38.78 29.60 68.60 2.03 40.81 16 16 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 17 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 18 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 19 C -0.15 -8.32 8.64 22.48 0.19 -8.13 16 20 C -0.13 -6.52 9.92 22.11 0.22 -6.30 16 21 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 22 H 0.04 1.17 7.56 -2.39 -0.02 1.15 16 23 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.34 8.88 8.54 -89.69 -0.77 8.11 16 25 H 0.35 6.02 9.04 -89.69 -0.81 5.21 16 26 H 0.05 1.64 7.64 -2.39 -0.02 1.63 16 27 H 0.06 1.76 7.66 -2.39 -0.02 1.74 16 28 H 0.12 4.75 6.27 -2.91 -0.02 4.74 16 29 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 30 H 0.29 13.91 8.30 -92.71 -0.77 13.14 16 31 H 0.11 6.18 6.16 -2.91 -0.02 6.16 16 32 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -60.50 270.87 2.16 -58.34 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: -0.44 Total: 32.21 kcal Atomic # 6 Polarization: -55.36 SS G_CDS: 2.68 Total: -52.68 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: -1.32 Total: -65.26 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -0.79 Total: -13.42 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Total: -60.50 2.16 -58.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403402429.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.261 kcal (2) G-P(sol) polarization free energy of solvation -60.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds