Wall clock time and date at job start Mon Mar 30 2020 02:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.46795 * 2 1 4 4 C 1.35705 * 116.99352 * 180.02562 * 3 2 1 5 5 C 1.39551 * 119.75036 * 179.97438 * 4 3 2 6 6 C 1.36281 * 120.51586 * 180.02562 * 5 4 3 7 7 C 1.50696 * 119.99949 * 179.97438 * 6 5 4 8 8 C 1.40817 * 120.00488 * 359.97438 * 6 5 4 9 9 C 1.40932 * 120.24255 * 179.97438 * 8 6 5 10 10 H 1.08008 * 119.99849 * 316.40190 * 9 8 6 11 11 C 1.39860 * 120.00216 * 136.40312 * 9 8 6 12 12 N 1.30946 * 119.99886 * 341.58301 * 11 9 8 13 13 Si 1.86805 * 120.00015 * 161.58586 * 11 9 8 14 14 H 1.48497 * 109.46815 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47164 * 119.99758 * 13 11 9 16 16 H 1.48501 * 109.46815 * 239.99909 * 13 11 9 17 17 C 1.41641 * 119.51681 * 0.02562 * 8 6 5 18 18 N 1.38799 * 120.25167 * 180.02562 * 17 8 6 19 19 C 1.38458 * 119.49464 * 359.97438 * 17 8 6 20 20 H 1.08995 * 109.47192 * 59.99328 * 1 2 3 21 21 H 1.09002 * 109.46873 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46880 * 299.99452 * 1 2 3 23 23 H 1.08998 * 109.46461 * 240.00539 * 2 1 3 24 24 H 1.08995 * 109.47192 * 120.00672 * 2 1 3 25 25 H 1.08002 * 119.74456 * 0.02562 * 5 4 3 26 26 H 1.09000 * 109.46949 * 270.01452 * 7 6 5 27 27 H 1.08992 * 109.47392 * 30.01682 * 7 6 5 28 28 H 1.09003 * 109.47427 * 150.01864 * 7 6 5 29 29 H 0.96998 * 119.99770 * 175.11163 * 12 11 9 30 30 H 0.97001 * 119.99673 * 169.72093 * 18 17 8 31 31 H 0.97000 * 119.99962 * 349.71044 * 18 17 8 32 32 H 1.07999 * 120.01020 * 179.72581 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3517 1.5250 -0.0005 5 6 3.8795 2.8169 -0.0011 6 6 5.2281 3.0134 -0.0022 7 6 5.7855 4.4135 -0.0034 8 6 6.1007 1.9082 -0.0022 9 6 7.4962 2.1057 -0.0038 10 1 7.9353 2.8515 -0.6500 11 6 8.3124 1.3358 0.8312 12 7 7.7925 0.7043 1.8537 13 14 10.1442 1.2086 0.4878 14 1 10.4786 2.0093 -0.7174 15 1 10.9036 1.7274 1.6536 16 1 10.5063 -0.2124 0.2536 17 6 5.5658 0.5967 -0.0016 18 7 6.4120 -0.5036 -0.0011 19 6 4.1925 0.4206 -0.0005 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.8932 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 3.2141 3.6676 -0.0007 26 1 5.9189 4.7505 -1.0313 27 1 5.0936 5.0805 0.5108 28 1 6.7473 4.4221 0.5095 29 1 8.3441 0.1142 2.3907 30 1 6.0524 -1.3918 0.1492 31 1 7.3628 -0.3842 -0.1511 32 1 3.7757 -0.5757 -0.0045 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575717410.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:55 Heat of formation + Delta-G solvation = -26.723465 kcal Electronic energy + Delta-G solvation = -15019.068784 eV Core-core repulsion = 12558.275196 eV Total energy + Delta-G solvation = -2460.793588 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.89090 -37.02093 -33.79682 -32.75241 -31.36752 -29.57632 -28.13516 -25.98522 -24.23855 -22.73918 -20.60134 -19.46459 -17.23197 -16.74774 -15.71123 -15.37190 -14.93055 -14.33223 -13.88888 -13.60708 -12.83002 -12.58046 -12.36675 -12.18939 -11.99374 -11.80665 -11.30272 -11.23131 -10.94118 -10.78118 -10.62726 -10.51022 -10.11381 -9.80168 -9.51452 -8.97446 -8.42184 -6.97922 -6.57021 -5.97231 -4.08890 2.83229 3.09100 3.15872 3.21713 3.25407 4.08917 4.16299 4.73685 5.29219 5.37175 5.43589 5.59862 5.64676 5.85890 6.11603 6.17492 6.23310 6.45769 6.49822 6.74439 6.80799 6.89771 7.07836 7.15603 7.37186 7.61749 7.74612 7.97180 8.18458 8.48791 8.65331 8.76899 9.07620 9.21338 9.31103 10.46886 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.040647 B = 0.008420 C = 0.007261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.698385 B = 3324.433533 C = 3855.236268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.062 3.938 3 O -0.329 6.329 4 C 0.074 3.926 5 C -0.180 4.180 6 C -0.109 4.109 7 C -0.085 4.085 8 C 0.036 3.964 9 C -0.475 4.475 10 H 0.073 0.927 11 C 0.067 3.933 12 N -0.806 5.806 13 Si 0.885 3.115 14 H -0.264 1.264 15 H -0.279 1.279 16 H -0.277 1.277 17 C 0.219 3.781 18 N -0.854 5.854 19 C -0.278 4.278 20 H 0.061 0.939 21 H 0.068 0.932 22 H 0.061 0.939 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.095 0.905 26 H 0.044 0.956 27 H 0.039 0.961 28 H 0.067 0.933 29 H 0.271 0.729 30 H 0.371 0.629 31 H 0.395 0.605 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.168 -2.576 -2.426 6.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.014 4.014 3 O -0.245 6.245 4 C 0.030 3.970 5 C -0.201 4.201 6 C -0.111 4.111 7 C -0.142 4.142 8 C 0.031 3.969 9 C -0.508 4.508 10 H 0.091 0.909 11 C -0.145 4.145 12 N -0.435 5.435 13 Si 0.710 3.290 14 H -0.188 1.188 15 H -0.205 1.205 16 H -0.203 1.203 17 C 0.113 3.887 18 N -0.391 5.391 19 C -0.303 4.303 20 H 0.080 0.920 21 H 0.087 0.913 22 H 0.080 0.920 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.113 0.887 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.196 0.804 31 H 0.227 0.773 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.242 -2.475 -2.198 6.199 hybrid contribution 1.212 -0.881 0.088 1.502 sum -4.029 -3.357 -2.110 5.653 Atomic orbital electron populations 1.21750 0.94172 1.01814 1.02887 1.22431 0.94356 0.84072 1.00534 1.85851 1.21122 1.26926 1.90592 1.18331 0.80085 0.93711 1.04897 1.19294 0.94393 0.92814 1.13591 1.19213 0.91489 0.94812 1.05614 1.20421 1.00722 0.93163 0.99858 1.16972 0.93427 0.88352 0.98130 1.18977 0.90976 1.19818 1.20985 0.90907 1.25625 0.99522 0.95663 0.93720 1.69982 1.37866 1.23816 1.11864 0.86641 0.84525 0.78561 0.79281 1.18757 1.20461 1.20277 1.17703 0.87915 0.88417 0.94683 1.42055 1.09954 1.05123 1.82008 1.20132 0.92854 0.96172 1.21097 0.92024 0.91329 0.91998 0.93198 0.93132 0.88678 0.93709 0.94163 0.91451 0.91867 0.80390 0.77340 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 10.28 37.16 0.38 -1.49 16 2 C 0.06 1.02 5.45 37.16 0.20 1.22 16 3 O -0.33 -6.91 10.12 -18.82 -0.19 -7.10 16 4 C 0.07 1.74 6.71 -38.88 -0.26 1.48 16 5 C -0.18 -4.31 9.54 -39.80 -0.38 -4.69 16 6 C -0.11 -2.68 5.90 -104.35 -0.62 -3.30 16 7 C -0.08 -1.81 9.51 36.00 0.34 -1.47 16 8 C 0.04 0.95 5.29 -106.60 -0.56 0.38 16 9 C -0.47 -12.37 7.24 -37.96 -0.27 -12.65 16 10 H 0.07 1.88 7.68 -52.48 -0.40 1.47 16 11 C 0.07 1.67 3.41 -17.32 -0.06 1.61 16 12 N -0.81 -20.85 11.39 55.54 0.63 -20.22 16 13 Si 0.88 18.66 29.60 -169.99 -5.03 13.63 16 14 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 15 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 17 C 0.22 5.47 6.26 -83.33 -0.52 4.94 16 18 N -0.85 -19.06 7.65 32.70 0.25 -18.81 16 19 C -0.28 -6.50 8.86 -39.29 -0.35 -6.84 16 20 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.79 7.64 -51.93 -0.40 0.40 16 24 H 0.05 0.83 7.65 -51.93 -0.40 0.43 16 25 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 26 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.04 0.76 8.08 -51.93 -0.42 0.35 16 28 H 0.07 1.49 7.07 -51.93 -0.37 1.12 16 29 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 30 H 0.37 7.20 8.85 -40.82 -0.36 6.84 16 31 H 0.40 9.03 6.01 -40.82 -0.25 8.78 16 32 H 0.10 2.00 6.25 -52.49 -0.33 1.68 16 LS Contribution 266.68 15.07 4.02 4.02 Total: -1.00 -28.40 266.68 -6.58 -34.99 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -4.17 Total: 14.28 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -2.10 Total: -20.80 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.88 Total: -39.03 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.19 Total: -7.10 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.40 -6.58 -34.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575717410.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.265 kcal (2) G-P(sol) polarization free energy of solvation -28.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds