Wall clock time and date at job start Mon Mar 30 2020 02:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42893 * 109.47203 * 2 1 4 4 C 1.35898 * 116.99948 * 180.02562 * 3 2 1 5 5 C 1.39014 * 119.89488 * 0.02562 * 4 3 2 6 6 C 1.39196 * 120.37184 * 180.02562 * 5 4 3 7 7 N 1.39672 * 119.92140 * 180.02562 * 6 5 4 8 8 C 1.38351 * 120.15507 * 359.97438 * 6 5 4 9 9 C 1.50693 * 120.10995 * 180.02562 * 8 6 5 10 10 C 1.40603 * 119.78349 * 0.02562 * 8 6 5 11 11 C 1.41416 * 120.18361 * 180.02562 * 10 8 6 12 12 H 1.08001 * 119.99861 * 29.76506 * 11 10 8 13 13 C 1.39916 * 120.00405 * 209.76762 * 11 10 8 14 14 N 1.30827 * 120.00313 * 197.06262 * 13 11 10 15 15 Si 1.86802 * 119.99737 * 17.06368 * 13 11 10 16 16 H 1.48501 * 109.47088 * 269.99994 * 15 13 11 17 17 H 1.48500 * 109.47255 * 30.00089 * 15 13 11 18 18 H 1.48507 * 109.47095 * 150.00307 * 15 13 11 19 19 C 1.38157 * 119.89635 * 180.32089 * 4 3 2 20 20 H 1.08998 * 109.46856 * 59.99965 * 1 2 3 21 21 H 1.09001 * 109.47115 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46730 * 299.99844 * 1 2 3 23 23 H 1.09005 * 109.46730 * 240.00156 * 2 1 3 24 24 H 1.09004 * 109.46876 * 120.00509 * 2 1 3 25 25 H 1.08006 * 119.81419 * 0.02562 * 5 4 3 26 26 H 0.97001 * 120.00232 * 179.97438 * 7 6 5 27 27 H 0.97002 * 120.00120 * 359.97438 * 7 6 5 28 28 H 1.09004 * 109.46883 * 269.97698 * 9 8 6 29 29 H 1.09001 * 109.47130 * 29.97230 * 9 8 6 30 30 H 1.09001 * 109.47394 * 149.97787 * 9 8 6 31 31 H 0.97004 * 119.99822 * 355.43481 * 14 13 11 32 32 H 1.08008 * 120.07744 * 0.02562 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 4.1985 0.4212 -0.0016 6 6 5.5799 0.5921 -0.0016 7 7 6.4199 -0.5238 -0.0032 8 6 6.1228 1.8646 -0.0011 9 6 7.6185 2.0484 -0.0017 10 6 5.2744 2.9859 -0.0001 11 6 5.8203 4.2904 -0.0001 12 1 6.7773 4.4753 -0.4652 13 6 5.1206 5.3416 0.6024 14 7 5.4364 6.5808 0.3264 15 14 3.7353 4.9757 1.8010 16 1 2.4525 4.8762 1.0596 17 1 4.0072 3.6910 2.4945 18 1 3.6450 6.0691 2.8019 19 6 3.8795 2.8028 0.0061 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.8934 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8900 25 1 3.7806 -0.5747 -0.0024 26 1 7.3828 -0.4061 -0.0036 27 1 6.0405 -1.4165 -0.0040 28 1 7.9795 2.0925 1.0258 29 1 8.0874 1.2094 -0.5159 30 1 7.8704 2.9762 -0.5155 31 1 6.1976 6.7718 -0.2438 32 1 3.2212 3.6591 0.0122 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575717470.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:44 Heat of formation + Delta-G solvation = -36.819081 kcal Electronic energy + Delta-G solvation = -15019.437274 eV Core-core repulsion = 12558.205907 eV Total energy + Delta-G solvation = -2461.231366 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.08683 -37.20099 -34.38268 -32.70235 -31.48423 -30.27123 -28.41361 -25.75339 -24.30503 -22.72409 -20.81673 -19.73224 -18.19943 -16.91983 -16.12405 -15.49708 -14.78918 -14.56612 -14.07791 -13.65661 -13.20202 -12.79130 -12.49398 -12.40346 -12.29082 -11.75230 -11.54740 -11.14785 -10.89546 -10.79886 -10.48303 -10.35260 -10.24785 -9.64008 -9.29158 -9.13959 -8.59376 -7.41627 -7.08546 -6.38593 -4.49929 2.76583 2.94382 3.37784 3.49107 3.70452 3.99992 4.16103 4.64943 4.68377 5.22235 5.34402 5.47697 5.56542 5.77729 6.04575 6.09787 6.17829 6.26941 6.38424 6.55809 6.63862 6.78088 6.83845 7.19591 7.31031 7.53340 7.62984 7.72020 7.88506 8.17922 8.29238 8.55239 8.65284 8.76294 8.89177 10.11704 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.021092 B = 0.012815 C = 0.008431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.193467 B = 2184.363203 C = 3320.125024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.326 6.326 4 C 0.189 3.811 5 C -0.380 4.380 6 C 0.267 3.733 7 N -0.889 5.889 8 C -0.284 4.284 9 C -0.069 4.069 10 C 0.158 3.842 11 C -0.511 4.511 12 H 0.081 0.919 13 C 0.046 3.954 14 N -0.820 5.820 15 Si 1.077 2.923 16 H -0.275 1.275 17 H -0.264 1.264 18 H -0.295 1.295 19 C -0.307 4.307 20 H 0.063 0.937 21 H 0.069 0.931 22 H 0.063 0.937 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.098 0.902 26 H 0.390 0.610 27 H 0.384 0.616 28 H 0.040 0.960 29 H 0.030 0.970 30 H 0.056 0.944 31 H 0.284 0.716 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.188 -10.743 0.572 11.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.241 6.241 4 C 0.144 3.856 5 C -0.403 4.403 6 C 0.165 3.835 7 N -0.430 5.430 8 C -0.290 4.290 9 C -0.126 4.126 10 C 0.154 3.846 11 C -0.540 4.540 12 H 0.099 0.901 13 C -0.173 4.173 14 N -0.443 5.443 15 Si 0.903 3.097 16 H -0.202 1.202 17 H -0.189 1.189 18 H -0.223 1.223 19 C -0.328 4.328 20 H 0.082 0.918 21 H 0.088 0.912 22 H 0.082 0.918 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.116 0.884 26 H 0.218 0.782 27 H 0.210 0.790 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.482 -9.731 1.459 10.812 hybrid contribution 1.570 -1.288 -1.135 2.327 sum -2.912 -11.018 0.324 11.401 Atomic orbital electron populations 1.21769 0.93908 1.01932 1.03184 1.22519 0.94646 0.83674 1.00755 1.86011 1.21190 1.27533 1.89329 1.18429 0.79915 0.93904 0.93349 1.19827 0.91995 0.96145 1.32323 1.17046 0.88896 0.86408 0.91159 1.42466 1.07724 1.05677 1.87126 1.19127 0.94687 0.90769 1.24398 1.20140 0.93197 0.99785 0.99472 1.17082 0.89524 0.92709 0.85275 1.20604 1.06935 0.92801 1.33622 0.90102 1.27257 1.00943 0.91909 0.97235 1.70559 1.23332 1.20923 1.29492 0.83528 0.74805 0.75880 0.75438 1.20167 1.18852 1.22279 1.20264 0.95062 0.93307 1.24166 0.91837 0.91182 0.91827 0.92853 0.92836 0.88365 0.78195 0.79016 0.94168 0.95158 0.92506 0.90453 0.87135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 10.28 37.16 0.38 -1.49 16 2 C 0.06 0.95 5.46 37.16 0.20 1.16 16 3 O -0.33 -6.97 10.13 -19.42 -0.20 -7.17 16 4 C 0.19 4.49 6.67 -39.32 -0.26 4.23 16 5 C -0.38 -8.28 8.89 -38.94 -0.35 -8.62 16 6 C 0.27 5.80 6.72 -83.89 -0.56 5.23 16 7 N -0.89 -14.80 8.98 32.36 0.29 -14.51 16 8 C -0.28 -6.79 5.96 -103.69 -0.62 -7.41 16 9 C -0.07 -1.43 9.17 36.00 0.33 -1.10 16 10 C 0.16 4.19 5.12 -106.87 -0.55 3.64 16 11 C -0.51 -14.02 8.78 -37.75 -0.33 -14.35 16 12 H 0.08 2.25 6.52 -52.49 -0.34 1.91 16 13 C 0.05 1.24 5.42 -17.35 -0.09 1.15 16 14 N -0.82 -22.62 13.66 55.55 0.76 -21.86 16 15 Si 1.08 26.08 24.90 -169.99 -4.23 21.85 16 16 H -0.27 -6.52 6.45 56.52 0.36 -6.16 16 17 H -0.26 -6.43 7.02 56.52 0.40 -6.04 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 C -0.31 -8.02 7.19 -38.68 -0.28 -8.30 16 20 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.81 7.65 -51.93 -0.40 0.41 16 24 H 0.05 0.81 7.65 -51.93 -0.40 0.42 16 25 H 0.10 1.86 6.27 -52.48 -0.33 1.54 16 26 H 0.39 5.85 6.80 -40.82 -0.28 5.57 16 27 H 0.38 5.35 8.84 -40.82 -0.36 4.99 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.03 0.53 6.53 -51.93 -0.34 0.19 16 30 H 0.06 1.23 6.29 -51.93 -0.33 0.90 16 31 H 0.28 7.58 8.73 -40.82 -0.36 7.22 16 32 H 0.11 2.94 4.44 -52.48 -0.23 2.70 16 LS Contribution 260.18 15.07 3.92 3.92 Total: -1.00 -29.63 260.18 -5.47 -35.10 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -3.89 Total: 8.52 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -2.13 Total: -25.86 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 1.05 Total: -36.37 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.20 Total: -7.17 kcal Atomic # 14 Polarization: 26.08 SS G_CDS: -4.23 Total: 21.85 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.63 -5.47 -35.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575717470.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.717 kcal (2) G-P(sol) polarization free energy of solvation -29.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds