Wall clock time and date at job start Mon Mar 30 2020 02:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42898 * 109.46892 * 2 1 4 4 C 1.35701 * 116.99844 * 184.85126 * 3 2 1 5 5 C 1.38426 * 120.12962 * 354.66106 * 4 3 2 6 6 C 1.38205 * 120.24678 * 180.02562 * 5 4 3 7 7 C 1.39519 * 120.51228 * 0.02562 * 6 5 4 8 8 N 1.39843 * 119.86645 * 179.97438 * 7 6 5 9 9 C 1.38064 * 120.26151 * 359.72330 * 7 6 5 10 10 C 1.50695 * 120.13034 * 180.28050 * 9 7 6 11 11 C 1.40662 * 119.74057 * 0.53225 * 9 7 6 12 12 C 1.41138 * 120.24754 * 179.74744 * 11 9 7 13 13 H 1.08004 * 120.00491 * 45.94930 * 12 11 9 14 14 C 1.39904 * 119.99919 * 225.95788 * 12 11 9 15 15 N 1.30879 * 120.00147 * 199.42294 * 14 12 11 16 16 Si 1.86799 * 119.99947 * 19.14082 * 14 12 11 17 17 H 1.48497 * 109.47309 * 265.98510 * 16 14 12 18 18 H 1.48498 * 109.47234 * 25.98712 * 16 14 12 19 19 H 1.48506 * 109.47278 * 145.98562 * 16 14 12 20 20 H 1.08996 * 109.46308 * 64.78707 * 1 2 3 21 21 H 1.08995 * 109.46767 * 184.78455 * 1 2 3 22 22 H 1.08995 * 109.47196 * 304.78463 * 1 2 3 23 23 H 1.09000 * 109.47252 * 239.99227 * 2 1 3 24 24 H 1.08998 * 109.46452 * 119.99520 * 2 1 3 25 25 H 1.07997 * 119.88195 * 0.02562 * 5 4 3 26 26 H 1.08001 * 119.74521 * 180.02562 * 6 5 4 27 27 H 0.97001 * 120.00081 * 359.97438 * 8 7 6 28 28 H 0.96997 * 119.99465 * 180.02562 * 8 7 6 29 29 H 1.08996 * 109.47105 * 270.25658 * 10 9 7 30 30 H 1.09000 * 109.47085 * 30.24884 * 10 9 7 31 31 H 1.08994 * 109.47322 * 150.25135 * 10 9 7 32 32 H 0.97003 * 119.99924 * 179.72565 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3476 1.5265 -0.1023 5 6 4.1976 0.4341 -0.0894 6 6 5.5640 0.6139 -0.1928 7 6 6.1029 1.8954 -0.3107 8 7 7.4876 2.0617 -0.4140 9 6 5.2743 2.9995 -0.3310 10 6 5.8591 4.3819 -0.4648 11 6 3.8823 2.8294 -0.2210 12 6 3.0257 3.9510 -0.2352 13 1 3.1652 4.7279 -0.9724 14 6 1.9958 4.0565 0.7059 15 7 0.9862 4.8593 0.4839 16 14 2.0577 3.0457 2.2755 17 1 1.2998 1.7835 2.0818 18 1 3.4706 2.7291 2.6050 19 1 1.4519 3.8211 3.3879 20 1 -0.3632 0.4378 -0.9298 21 1 -0.3633 -1.0241 0.0857 22 1 -0.3633 0.5862 0.8440 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 3.7916 -0.5625 0.0018 26 1 6.2197 -0.2442 -0.1823 27 1 8.0713 1.2871 -0.4032 28 1 7.8643 2.9518 -0.4957 29 1 6.0727 4.7834 0.5257 30 1 6.7817 4.3316 -1.0431 31 1 5.1461 5.0303 -0.9739 32 1 0.2702 4.9294 1.1345 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575717905.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:27 Heat of formation + Delta-G solvation = -41.402131 kcal Electronic energy + Delta-G solvation = -15416.571677 eV Core-core repulsion = 12955.141575 eV Total energy + Delta-G solvation = -2461.430102 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.70662 -38.64301 -35.66886 -34.26458 -33.08139 -32.21207 -29.75276 -27.29255 -26.40470 -24.16267 -22.46047 -21.18943 -19.40483 -18.19107 -17.77249 -17.40002 -16.74392 -16.11255 -15.62667 -15.02833 -14.55286 -14.42626 -14.11207 -13.76576 -13.41888 -13.32276 -13.09694 -12.84021 -12.75641 -12.59901 -12.21217 -12.06325 -11.93944 -11.59790 -11.04489 -10.81263 -10.28873 -9.21115 -8.62347 -7.77322 -6.25428 0.79359 1.14243 1.33760 1.45574 1.52331 2.33053 2.82970 2.89845 3.34088 3.51968 4.13950 4.21078 4.34562 4.45266 4.47219 4.61324 4.81934 4.85960 4.98720 4.99451 5.03966 5.13793 5.23659 5.43971 5.58902 5.70071 5.86399 6.01259 6.02564 6.48972 6.69949 6.89424 7.02331 7.29337 7.34170 8.46728 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024661 B = 0.014323 C = 0.010420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.132953 B = 1954.413360 C = 2686.557073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.043 3.957 3 O -0.327 6.327 4 C -0.024 4.024 5 C -0.149 4.149 6 C -0.245 4.245 7 C 0.203 3.797 8 N -0.873 5.873 9 C -0.229 4.229 10 C -0.073 4.073 11 C 0.079 3.921 12 C -0.491 4.491 13 H 0.053 0.947 14 C 0.074 3.926 15 N -0.872 5.872 16 Si 0.951 3.049 17 H -0.240 1.240 18 H -0.276 1.276 19 H -0.291 1.291 20 H 0.056 0.944 21 H 0.106 0.894 22 H 0.046 0.954 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.130 0.870 26 H 0.131 0.869 27 H 0.402 0.598 28 H 0.398 0.602 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.043 0.957 32 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.067 -9.575 0.943 11.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 O -0.243 6.243 4 C -0.070 4.070 5 C -0.169 4.169 6 C -0.268 4.268 7 C 0.099 3.901 8 N -0.417 5.417 9 C -0.235 4.235 10 C -0.130 4.130 11 C 0.076 3.924 12 C -0.522 4.522 13 H 0.071 0.929 14 C -0.137 4.137 15 N -0.502 5.502 16 Si 0.776 3.224 17 H -0.164 1.164 18 H -0.201 1.201 19 H -0.218 1.218 20 H 0.075 0.925 21 H 0.125 0.875 22 H 0.065 0.935 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.148 0.852 26 H 0.149 0.851 27 H 0.231 0.769 28 H 0.228 0.772 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.629 -9.307 0.996 10.923 hybrid contribution 0.027 -0.050 0.449 0.453 sum 5.656 -9.357 1.445 11.029 Atomic orbital electron populations 1.21786 0.92506 1.03625 1.02268 1.22813 0.96381 0.83031 1.00956 1.86112 1.20291 1.28406 1.89452 1.19382 0.82389 0.94188 1.10993 1.20880 0.94041 0.96961 1.04981 1.20211 0.94330 0.95089 1.17200 1.17441 0.84820 0.92756 0.95045 1.42284 1.02455 1.11106 1.85862 1.19644 0.91781 0.95126 1.16926 1.20213 0.99152 0.93113 1.00481 1.17062 0.91812 0.90371 0.93199 1.18864 1.11788 1.05906 1.15641 0.92855 1.26259 0.91913 0.94152 1.01424 1.69795 1.07665 1.36758 1.35996 0.85694 0.79216 0.80167 0.77283 1.16406 1.20059 1.21838 0.92517 0.87531 0.93455 0.91801 0.92618 0.85245 0.85105 0.76929 0.77168 0.93085 0.91201 0.93830 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.45 10.28 71.99 0.74 -3.71 16 2 C 0.04 1.56 5.21 71.99 0.37 1.93 16 3 O -0.33 -15.74 5.81 -90.21 -0.52 -16.26 16 4 C -0.02 -1.19 5.21 23.08 0.12 -1.07 16 5 C -0.15 -6.15 9.02 22.31 0.20 -5.95 16 6 C -0.25 -9.29 9.89 22.57 0.22 -9.07 16 7 C 0.20 7.92 6.73 38.13 0.26 8.18 16 8 N -0.87 -24.75 8.99 -51.40 -0.46 -25.21 16 9 C -0.23 -10.56 5.95 -19.31 -0.11 -10.68 16 10 C -0.07 -2.94 9.16 71.23 0.65 -2.29 16 11 C 0.08 4.18 4.60 -21.21 -0.10 4.08 16 12 C -0.49 -29.04 8.32 23.39 0.19 -28.85 16 13 H 0.05 3.40 7.12 -2.91 -0.02 3.38 16 14 C 0.07 4.28 4.91 85.24 0.42 4.70 16 15 N -0.87 -51.98 13.93 21.82 0.30 -51.68 16 16 Si 0.95 47.59 24.87 68.60 1.71 49.29 16 17 H -0.24 -11.32 6.04 99.48 0.60 -10.72 16 18 H -0.28 -14.23 7.11 99.48 0.71 -13.52 16 19 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 20 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 21 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 22 H 0.05 1.58 8.12 -2.39 -0.02 1.56 16 23 H 0.06 2.06 7.62 -2.39 -0.02 2.04 16 24 H 0.06 1.83 7.71 -2.39 -0.02 1.81 16 25 H 0.13 4.48 6.31 -2.91 -0.02 4.46 16 26 H 0.13 4.00 8.06 -2.91 -0.02 3.97 16 27 H 0.40 8.89 8.84 -92.71 -0.82 8.07 16 28 H 0.40 10.08 6.80 -92.71 -0.63 9.45 16 29 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.07 2.24 6.54 -2.39 -0.02 2.23 16 31 H 0.04 1.94 6.58 -2.39 -0.02 1.92 16 32 H 0.28 15.38 8.30 -92.71 -0.77 14.62 16 Total: -1.00 -68.01 259.53 3.58 -64.43 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -0.41 Total: 22.14 kcal Atomic # 6 Polarization: -45.68 SS G_CDS: 2.97 Total: -42.71 kcal Atomic # 7 Polarization: -76.73 SS G_CDS: -0.16 Total: -76.89 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.52 Total: -16.26 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 1.71 Total: 49.29 kcal Total: -68.01 3.58 -64.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575717905.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.027 kcal (2) G-P(sol) polarization free energy of solvation -68.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds