Wall clock time and date at job start Mon Mar 30 2020 02:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42897 * 109.47543 * 2 1 4 4 C 1.35750 * 117.00413 * 180.02562 * 3 2 1 5 5 C 1.39098 * 120.29714 * 270.25362 * 4 3 2 6 6 N 1.40013 * 120.03483 * 359.97438 * 5 4 3 7 7 C 1.38805 * 119.92429 * 180.25379 * 5 4 3 8 8 C 1.38794 * 120.51736 * 359.76711 * 7 5 4 9 9 C 1.36453 * 120.60431 * 359.97438 * 8 7 5 10 10 C 1.50698 * 119.97309 * 179.97438 * 9 8 7 11 11 C 1.40840 * 120.05350 * 0.02562 * 9 8 7 12 12 C 1.41181 * 120.25641 * 179.97438 * 11 9 8 13 13 H 1.08000 * 119.99953 * 42.43496 * 12 11 9 14 14 C 1.39912 * 119.99976 * 222.43875 * 12 11 9 15 15 N 1.30873 * 120.00274 * 24.16707 * 14 12 11 16 16 Si 1.86806 * 119.99882 * 203.88968 * 14 12 11 17 17 H 1.48499 * 109.47375 * 180.27196 * 16 14 12 18 18 H 1.48499 * 109.47108 * 300.27614 * 16 14 12 19 19 H 1.48500 * 109.46795 * 60.27396 * 16 14 12 20 20 H 1.09004 * 109.46753 * 299.99766 * 1 2 3 21 21 H 1.08997 * 109.47577 * 59.99746 * 1 2 3 22 22 H 1.08999 * 109.47344 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46753 * 240.00234 * 2 1 3 24 24 H 1.08995 * 109.47058 * 120.00287 * 2 1 3 25 25 H 0.96994 * 120.00033 * 180.25677 * 6 5 4 26 26 H 0.97001 * 120.00425 * 0.25588 * 6 5 4 27 27 H 1.07999 * 119.73924 * 179.74355 * 7 5 4 28 28 H 1.08000 * 119.69740 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.47388 * 270.41784 * 10 9 8 30 30 H 1.08995 * 109.47382 * 30.42461 * 10 9 8 31 31 H 1.09001 * 109.47012 * 150.42469 * 10 9 8 32 32 H 0.96998 * 119.99882 * 5.15580 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3522 1.5251 -0.0005 5 6 4.0490 1.6116 1.2002 6 7 3.3631 1.5158 2.4170 7 6 5.4244 1.7987 1.1906 8 6 6.1141 1.8960 -0.0099 9 6 5.4526 1.8088 -1.2002 10 6 6.2156 1.9169 -2.4952 11 6 4.0572 1.6190 -1.2193 12 6 3.3684 1.5287 -2.4484 13 1 3.7854 0.9508 -3.2599 14 6 2.1456 2.1880 -2.6151 15 7 1.8584 3.2305 -1.8779 16 14 0.9263 1.5849 -3.8954 17 1 -0.2793 2.4517 -3.8779 18 1 1.5541 1.6371 -5.2402 19 1 0.5349 0.1862 -3.5859 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8932 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 3.8491 1.5799 3.2540 26 1 2.4020 1.3853 2.4231 27 1 5.9619 1.8696 2.1246 28 1 7.1842 2.0420 -0.0019 29 1 6.2666 2.9620 -2.8008 30 1 7.2248 1.5294 -2.3558 31 1 5.7072 1.3375 -3.2659 32 1 2.5216 3.5915 -1.2691 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575717976.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:29 Heat of formation + Delta-G solvation = -52.871150 kcal Electronic energy + Delta-G solvation = -15607.329388 eV Core-core repulsion = 13145.401952 eV Total energy + Delta-G solvation = -2461.927436 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.50409 -37.85666 -36.19489 -34.65200 -32.32613 -31.33112 -30.14067 -27.02291 -25.96952 -23.76994 -22.78510 -21.47307 -19.58565 -18.13530 -17.59671 -16.95112 -16.00750 -15.84415 -15.50093 -15.26506 -14.64412 -14.53575 -14.17813 -13.53116 -13.37999 -13.09492 -12.94323 -12.71887 -12.56006 -12.37236 -12.09128 -11.97932 -11.75648 -11.31716 -10.84156 -10.58643 -10.16010 -9.14588 -8.91852 -7.99839 -6.25403 0.93299 1.14572 1.50881 1.62964 1.76543 2.43024 2.87077 3.20783 3.28709 3.71148 4.19818 4.41903 4.46196 4.60065 4.66879 4.70218 4.84394 4.97412 5.04332 5.08791 5.19086 5.23552 5.28435 5.50919 5.75996 5.80483 5.95061 6.09053 6.30440 6.40646 6.74101 6.83512 7.14203 7.23176 7.47710 8.35454 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.023403 B = 0.015214 C = 0.010267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.164000 B = 1840.002450 C = 2726.615158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.053 3.947 3 O -0.313 6.313 4 C -0.096 4.096 5 C 0.209 3.791 6 N -0.872 5.872 7 C -0.298 4.298 8 C -0.062 4.062 9 C -0.238 4.238 10 C -0.071 4.071 11 C 0.091 3.909 12 C -0.561 4.561 13 H 0.064 0.936 14 C 0.027 3.973 15 N -0.803 5.803 16 Si 1.091 2.909 17 H -0.275 1.275 18 H -0.265 1.265 19 H -0.264 1.264 20 H 0.065 0.935 21 H 0.045 0.955 22 H 0.092 0.908 23 H 0.022 0.978 24 H 0.038 0.962 25 H 0.400 0.600 26 H 0.394 0.606 27 H 0.120 0.880 28 H 0.121 0.879 29 H 0.042 0.958 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.060 -4.772 3.510 5.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.022 4.022 3 O -0.229 6.229 4 C -0.145 4.145 5 C 0.105 3.895 6 N -0.413 5.413 7 C -0.321 4.321 8 C -0.081 4.081 9 C -0.241 4.241 10 C -0.127 4.127 11 C 0.088 3.912 12 C -0.590 4.590 13 H 0.082 0.918 14 C -0.191 4.191 15 N -0.425 5.425 16 Si 0.911 3.089 17 H -0.200 1.200 18 H -0.190 1.190 19 H -0.189 1.189 20 H 0.084 0.916 21 H 0.064 0.936 22 H 0.111 0.889 23 H 0.041 0.959 24 H 0.056 0.944 25 H 0.229 0.771 26 H 0.222 0.778 27 H 0.138 0.862 28 H 0.139 0.861 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.689 -4.313 2.880 5.454 hybrid contribution 1.639 -0.343 0.998 1.949 sum -0.051 -4.657 3.878 6.060 Atomic orbital electron populations 1.21683 0.92557 1.02916 1.02281 1.22578 0.95927 0.85350 0.98362 1.86141 1.18221 1.24698 1.93860 1.18422 0.84221 1.20798 0.91075 1.18100 0.91730 0.93732 0.85942 1.42195 1.10019 1.84865 1.04261 1.20127 0.91726 1.22232 0.98016 1.20384 0.98747 0.97327 0.91647 1.19908 0.94517 1.14025 0.95606 1.20269 0.97872 1.00025 0.94582 1.17990 0.91822 0.88516 0.92901 1.20222 1.07261 1.32435 0.99047 0.91820 1.27623 0.98566 0.92569 1.00321 1.70450 1.37546 1.16998 1.17519 0.83358 0.74514 0.77091 0.73914 1.20036 1.18975 1.18853 0.91628 0.93627 0.88883 0.95908 0.94396 0.77062 0.77777 0.86182 0.86105 0.93932 0.91870 0.93626 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 10.28 71.98 0.74 -3.89 16 2 C 0.05 2.22 6.78 71.98 0.49 2.71 16 3 O -0.31 -15.40 6.73 -90.75 -0.61 -16.01 16 4 C -0.10 -4.89 4.81 23.18 0.11 -4.78 16 5 C 0.21 9.38 6.77 38.18 0.26 9.64 16 6 N -0.87 -31.02 9.09 -51.11 -0.46 -31.48 16 7 C -0.30 -12.60 9.89 22.54 0.22 -12.37 16 8 C -0.06 -2.70 9.60 21.99 0.21 -2.49 16 9 C -0.24 -11.55 5.90 -19.65 -0.12 -11.66 16 10 C -0.07 -2.98 9.61 71.24 0.68 -2.30 16 11 C 0.09 4.89 4.87 -21.21 -0.10 4.79 16 12 C -0.56 -30.61 7.87 23.40 0.18 -30.43 16 13 H 0.06 3.46 6.85 -2.91 -0.02 3.44 16 14 C 0.03 1.44 4.26 85.24 0.36 1.80 16 15 N -0.80 -45.54 12.31 21.82 0.27 -45.27 16 16 Si 1.09 45.90 29.99 68.60 2.06 47.95 16 17 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 18 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 19 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 20 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 21 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 22 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 23 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 24 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.40 11.48 8.84 -92.71 -0.82 10.66 16 26 H 0.39 13.73 8.20 -92.71 -0.76 12.97 16 27 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 28 H 0.12 4.40 8.06 -2.91 -0.02 4.37 16 29 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 2.23 8.08 -2.39 -0.02 2.21 16 31 H 0.04 1.99 6.48 -2.39 -0.02 1.97 16 32 H 0.27 16.42 7.26 -92.71 -0.67 15.75 16 Total: -1.00 -61.88 270.78 3.94 -57.94 By element: Atomic # 1 Polarization: 36.22 SS G_CDS: -0.35 Total: 35.87 kcal Atomic # 6 Polarization: -52.04 SS G_CDS: 3.04 Total: -49.00 kcal Atomic # 7 Polarization: -76.56 SS G_CDS: -0.20 Total: -76.75 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.61 Total: -16.01 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.06 Total: 47.95 kcal Total: -61.88 3.94 -57.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575717976.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.068 kcal (2) G-P(sol) polarization free energy of solvation -61.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds