Wall clock time and date at job start Mon Mar 30 2020 02:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.46686 * 2 1 4 4 C 1.35978 * 116.99729 * 179.97438 * 3 2 1 5 5 C 1.37695 * 120.03001 * 359.72881 * 4 3 2 6 6 C 1.40853 * 119.67116 * 179.70958 * 5 4 3 7 7 C 1.41122 * 120.13274 * 180.26992 * 6 5 4 8 8 H 1.07996 * 119.99701 * 205.80942 * 7 6 5 9 9 C 1.39848 * 120.00114 * 25.81478 * 7 6 5 10 10 N 1.30915 * 119.99869 * 15.27312 * 9 7 6 11 11 Si 1.86797 * 119.99874 * 195.27350 * 9 7 6 12 12 H 1.48496 * 109.47154 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.46984 * 120.00118 * 11 9 7 14 14 H 1.48505 * 109.47004 * 240.00130 * 11 9 7 15 15 C 1.40893 * 119.73114 * 0.56363 * 6 5 4 16 16 C 1.50696 * 119.97699 * 179.70964 * 15 6 5 17 17 C 1.36370 * 120.05095 * 359.72908 * 15 6 5 18 18 C 1.39402 * 120.33456 * 359.97438 * 17 15 6 19 19 N 1.39010 * 119.86613 * 180.02562 * 18 17 15 20 20 H 1.08998 * 109.47002 * 60.00556 * 1 2 3 21 21 H 1.09006 * 109.46877 * 179.97438 * 1 2 3 22 22 H 1.08991 * 109.47535 * 300.00053 * 1 2 3 23 23 H 1.09000 * 109.47264 * 119.99920 * 2 1 3 24 24 H 1.09004 * 109.47485 * 240.00178 * 2 1 3 25 25 H 1.08007 * 120.16410 * 359.97314 * 5 4 3 26 26 H 0.96996 * 119.99853 * 179.97438 * 10 9 7 27 27 H 1.08998 * 109.47243 * 270.01789 * 16 15 6 28 28 H 1.09006 * 109.47139 * 30.01842 * 16 15 6 29 29 H 1.09002 * 109.47330 * 150.01638 * 16 15 6 30 30 H 1.08002 * 119.83112 * 180.02562 * 17 15 6 31 31 H 0.97003 * 119.99799 * 179.97438 * 19 18 17 32 32 H 0.97000 * 119.99905 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3543 1.5255 0.0005 5 6 4.1936 0.4340 0.0067 6 6 5.5888 0.6273 0.0010 7 6 6.4581 -0.4844 0.0015 8 1 7.4554 -0.3898 0.4048 9 6 6.0280 -1.7085 -0.5203 10 7 4.9561 -1.7601 -1.2701 11 14 6.9830 -3.2700 -0.1475 12 1 8.1469 -2.9443 0.7154 13 1 6.0996 -4.2346 0.5554 14 1 7.4623 -3.8723 -1.4175 15 6 6.1131 1.9351 0.0011 16 6 7.6049 2.1483 0.0017 17 6 5.2715 3.0082 0.0011 18 6 3.8903 2.8197 0.0005 19 7 3.0414 3.9205 0.0000 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.8933 -0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 3.7842 -0.5654 0.0116 26 1 4.6580 -2.6090 -1.6324 27 1 7.9642 2.1995 1.0294 28 1 8.0907 1.3188 -0.5122 29 1 7.8389 3.0809 -0.5119 30 1 5.6772 4.0091 0.0008 31 1 2.0800 3.7916 -0.0009 32 1 3.4105 4.8175 0.0004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575718047.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:50 Heat of formation + Delta-G solvation = -32.714078 kcal Electronic energy + Delta-G solvation = -15064.711103 eV Core-core repulsion = 12603.657743 eV Total energy + Delta-G solvation = -2461.053360 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.82886 -36.61121 -34.32812 -32.60567 -31.14403 -29.74081 -28.30890 -25.61817 -24.20966 -22.70627 -20.50943 -19.54701 -17.65160 -16.22366 -15.77788 -15.17891 -14.97129 -14.70793 -13.65488 -13.10210 -12.76593 -12.65439 -12.56193 -12.20522 -12.08052 -11.60544 -11.20667 -11.07406 -10.98249 -10.86168 -10.62892 -10.36815 -9.79940 -9.62550 -9.42427 -9.28965 -8.55560 -7.00994 -6.64610 -6.14529 -4.07132 2.88974 3.03951 3.13139 3.18506 3.35028 4.02817 4.24161 4.74208 5.15427 5.49161 5.60224 5.72501 5.83690 6.08366 6.26390 6.33790 6.40278 6.47770 6.63895 6.74683 6.86858 7.04412 7.11654 7.24924 7.34368 7.69156 7.78296 8.08164 8.21820 8.46968 8.62574 8.86832 8.94264 9.04647 9.18099 10.35135 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.021979 B = 0.011837 C = 0.007895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.642595 B = 2364.964433 C = 3545.911931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.064 3.936 3 O -0.336 6.336 4 C 0.063 3.937 5 C -0.204 4.204 6 C 0.101 3.899 7 C -0.459 4.459 8 H 0.077 0.923 9 C 0.074 3.926 10 N -0.809 5.809 11 Si 0.902 3.098 12 H -0.262 1.262 13 H -0.275 1.275 14 H -0.277 1.277 15 C -0.180 4.180 16 C -0.082 4.082 17 C -0.137 4.137 18 C 0.082 3.918 19 N -0.893 5.893 20 H 0.059 0.941 21 H 0.068 0.932 22 H 0.057 0.943 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.132 0.868 26 H 0.274 0.726 27 H 0.040 0.960 28 H 0.061 0.939 29 H 0.036 0.964 30 H 0.094 0.906 31 H 0.387 0.613 32 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.810 2.124 1.624 4.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.012 4.012 3 O -0.252 6.252 4 C 0.016 3.984 5 C -0.224 4.224 6 C 0.098 3.902 7 C -0.490 4.490 8 H 0.095 0.905 9 C -0.141 4.141 10 N -0.436 5.436 11 Si 0.727 3.273 12 H -0.186 1.186 13 H -0.200 1.200 14 H -0.202 1.202 15 C -0.182 4.182 16 C -0.139 4.139 17 C -0.159 4.159 18 C -0.017 4.017 19 N -0.437 5.437 20 H 0.078 0.922 21 H 0.087 0.913 22 H 0.076 0.924 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.149 0.851 26 H 0.085 0.915 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.112 0.888 31 H 0.213 0.787 32 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -4.014 1.991 1.486 4.720 hybrid contribution 0.235 -0.766 0.029 0.802 sum -3.779 1.224 1.515 4.251 Atomic orbital electron populations 1.21745 0.94490 1.01782 1.02413 1.22443 0.93724 0.83510 1.01507 1.85751 1.20920 1.27710 1.90792 1.18401 0.81017 0.92939 1.05994 1.21327 0.93892 0.96654 1.10554 1.17131 0.91405 0.91166 0.90484 1.19408 1.00305 0.93626 1.35663 0.90470 1.25820 0.94915 1.00490 0.92889 1.69865 1.22270 1.27104 1.24409 0.86362 0.80493 0.81427 0.78992 1.18561 1.20023 1.20244 1.19273 0.94058 0.92928 1.11970 1.20378 0.94019 0.99973 0.99538 1.19518 0.90339 0.97115 1.08944 1.16655 0.89505 0.84372 1.11185 1.41623 1.07029 1.04822 1.90275 0.92228 0.91318 0.92364 0.93181 0.92027 0.85067 0.91483 0.94123 0.92010 0.94539 0.88841 0.78717 0.79496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 10.28 37.16 0.38 -1.73 16 2 C 0.06 1.22 5.46 37.16 0.20 1.42 16 3 O -0.34 -7.40 9.36 -19.67 -0.18 -7.58 16 4 C 0.06 1.55 6.70 -39.09 -0.26 1.29 16 5 C -0.20 -5.39 7.65 -38.79 -0.30 -5.68 16 6 C 0.10 2.73 5.57 -106.81 -0.59 2.14 16 7 C -0.46 -12.24 8.11 -37.89 -0.31 -12.55 16 8 H 0.08 1.98 6.83 -52.49 -0.36 1.62 16 9 C 0.07 1.88 5.18 -17.34 -0.09 1.79 16 10 N -0.81 -21.14 10.88 55.54 0.60 -20.54 16 11 Si 0.90 19.05 29.59 -169.99 -5.03 14.02 16 12 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 13 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 14 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 15 C -0.18 -4.44 5.90 -104.29 -0.62 -5.05 16 16 C -0.08 -1.74 9.38 36.00 0.34 -1.40 16 17 C -0.14 -3.15 9.44 -39.82 -0.38 -3.53 16 18 C 0.08 1.89 6.78 -83.48 -0.57 1.33 16 19 N -0.89 -16.81 9.04 32.61 0.29 -16.51 16 20 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 21 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.97 7.65 -51.93 -0.40 0.57 16 24 H 0.06 1.26 7.67 -51.93 -0.40 0.86 16 25 H 0.13 3.51 4.38 -52.48 -0.23 3.28 16 26 H 0.27 6.56 8.30 -40.82 -0.34 6.22 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.06 1.33 6.75 -51.93 -0.35 0.98 16 29 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 30 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 31 H 0.39 6.89 8.16 -40.82 -0.33 6.56 16 32 H 0.38 6.07 8.83 -40.82 -0.36 5.71 16 LS Contribution 267.94 15.07 4.04 4.04 Total: -1.00 -28.66 267.94 -6.56 -35.22 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -4.10 Total: 13.34 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -2.19 Total: -21.98 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.90 Total: -37.05 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -0.18 Total: -7.58 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.66 -6.56 -35.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718047.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.504 kcal (2) G-P(sol) polarization free energy of solvation -28.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds