Wall clock time and date at job start Mon Mar 30 2020 02:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42906 * 109.46843 * 2 1 4 4 C 1.35706 * 116.99847 * 179.97438 * 3 2 1 5 5 C 1.38431 * 120.13322 * 269.97740 * 4 3 2 6 6 C 1.50703 * 119.87331 * 0.02562 * 5 4 3 7 7 C 1.38195 * 120.24562 * 180.02562 * 5 4 3 8 8 C 1.39510 * 120.51719 * 359.97438 * 7 5 4 9 9 N 1.39846 * 119.87036 * 180.02562 * 8 7 5 10 10 C 1.38070 * 120.26057 * 359.79000 * 8 7 5 11 11 C 1.40662 * 119.74259 * 0.44589 * 10 8 7 12 12 C 1.41130 * 120.24767 * 179.81617 * 11 10 8 13 13 H 1.08004 * 119.99485 * 205.21583 * 12 11 10 14 14 C 1.39905 * 120.00663 * 25.20841 * 12 11 10 15 15 N 1.30876 * 119.99792 * 17.25776 * 14 12 11 16 16 Si 1.86803 * 120.00403 * 197.25941 * 14 12 11 17 17 H 1.48497 * 109.46945 * 265.18796 * 16 14 12 18 18 H 1.48496 * 109.46803 * 25.18628 * 16 14 12 19 19 H 1.48497 * 109.46965 * 145.18695 * 16 14 12 20 20 H 1.08994 * 109.47651 * 299.99956 * 1 2 3 21 21 H 1.09004 * 109.47112 * 60.00545 * 1 2 3 22 22 H 1.09000 * 109.46957 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.48012 * 240.00173 * 2 1 3 24 24 H 1.09003 * 109.47618 * 119.99593 * 2 1 3 25 25 H 1.09005 * 109.46977 * 90.00338 * 6 5 4 26 26 H 1.09005 * 109.46864 * 209.99781 * 6 5 4 27 27 H 1.08995 * 109.47506 * 330.00003 * 6 5 4 28 28 H 1.08001 * 119.74090 * 180.02562 * 7 5 4 29 29 H 0.96992 * 119.99696 * 359.97438 * 9 8 7 30 30 H 0.97000 * 119.99794 * 180.02562 * 9 8 7 31 31 H 1.07994 * 120.12778 * 180.22921 * 10 8 7 32 32 H 0.97000 * 120.00421 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3516 1.5252 0.0005 5 6 4.0400 1.6169 1.1980 6 6 3.2926 1.5183 2.5030 7 6 5.4099 1.7985 1.2013 8 6 6.1151 1.8910 0.0011 9 7 7.5014 2.0743 0.0202 10 6 5.4505 1.7975 -1.2054 11 6 4.0555 1.6176 -1.2216 12 6 3.3648 1.5246 -2.4488 13 1 2.3196 1.7915 -2.5017 14 6 4.0340 1.0868 -3.5968 15 7 5.1730 0.4514 -3.4880 16 14 3.3018 1.4091 -5.2849 17 1 2.5156 0.2259 -5.7175 18 1 2.4133 2.5972 -5.2203 19 1 4.3945 1.6604 -6.2585 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.2475 0.4757 2.8180 26 1 3.8088 2.1054 3.2626 27 1 2.2809 1.9024 2.3722 28 1 5.9389 1.8686 2.1403 29 1 7.9706 2.1372 0.8668 30 1 7.9935 2.1392 -0.8131 31 1 5.9990 1.8657 -2.1332 32 1 5.6368 0.1475 -4.2839 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575718429.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:42 Heat of formation + Delta-G solvation = -53.676468 kcal Electronic energy + Delta-G solvation = -15143.225465 eV Core-core repulsion = 12681.263107 eV Total energy + Delta-G solvation = -2461.962357 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.29340 -38.06839 -35.90272 -34.71160 -32.54982 -31.90279 -29.23369 -27.04827 -26.82260 -23.63179 -22.48266 -21.61753 -18.95703 -18.17576 -17.71909 -17.01682 -16.25182 -16.05189 -15.60271 -14.78500 -14.66232 -14.24358 -13.99090 -13.62799 -13.33441 -13.14397 -12.93288 -12.85232 -12.72736 -12.50226 -12.30363 -12.11911 -11.71907 -11.53702 -11.15084 -10.42611 -10.18827 -9.17503 -8.65300 -7.87750 -6.30311 1.02420 1.12234 1.36295 1.48609 1.55295 2.21240 2.74888 3.26873 3.40575 3.88218 4.26667 4.43955 4.50132 4.58058 4.71258 4.81155 4.91435 4.93464 5.11976 5.12901 5.19999 5.28156 5.33013 5.49222 5.54543 5.88549 6.04247 6.12802 6.26591 6.50702 6.88374 6.96621 7.00027 7.37780 7.47876 8.34425 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.019585 B = 0.013540 C = 0.008408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.309116 B = 2067.515790 C = 3329.541470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.055 3.945 3 O -0.334 6.334 4 C -0.089 4.089 5 C -0.051 4.051 6 C -0.094 4.094 7 C -0.294 4.294 8 C 0.217 3.783 9 N -0.877 5.877 10 C -0.261 4.261 11 C 0.101 3.899 12 C -0.480 4.480 13 H 0.068 0.932 14 C 0.038 3.962 15 N -0.818 5.818 16 Si 0.975 3.025 17 H -0.262 1.262 18 H -0.263 1.263 19 H -0.263 1.263 20 H 0.068 0.932 21 H 0.052 0.948 22 H 0.090 0.910 23 H 0.018 0.982 24 H 0.039 0.961 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.119 0.881 29 H 0.399 0.601 30 H 0.394 0.606 31 H 0.103 0.897 32 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.248 -0.516 4.302 4.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.020 4.020 3 O -0.251 6.251 4 C -0.135 4.135 5 C -0.052 4.052 6 C -0.151 4.151 7 C -0.317 4.317 8 C 0.114 3.886 9 N -0.418 5.418 10 C -0.286 4.286 11 C 0.097 3.903 12 C -0.510 4.510 13 H 0.086 0.914 14 C -0.177 4.177 15 N -0.444 5.444 16 Si 0.796 3.204 17 H -0.187 1.187 18 H -0.186 1.186 19 H -0.187 1.187 20 H 0.087 0.913 21 H 0.072 0.928 22 H 0.109 0.891 23 H 0.037 0.963 24 H 0.058 0.942 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.137 0.863 29 H 0.228 0.772 30 H 0.222 0.778 31 H 0.121 0.879 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.266 -0.516 4.185 4.403 hybrid contribution 0.495 -0.195 -0.997 1.130 sum -0.771 -0.711 3.189 3.357 Atomic orbital electron populations 1.21680 0.91808 1.03113 1.02637 1.22623 0.96272 0.84681 0.98467 1.85884 1.19176 1.25821 1.94226 1.18562 0.83588 1.19235 0.92075 1.19843 0.93528 0.97268 0.94604 1.20568 0.99552 1.01733 0.93214 1.19954 0.93162 1.23121 0.95468 1.17799 0.84579 0.92630 0.93637 1.42230 1.03888 1.85309 1.10366 1.20522 0.94777 1.18011 0.95287 1.17954 0.92182 0.87422 0.92726 1.19552 0.97718 1.40210 0.93475 0.91427 1.26701 0.94709 0.91639 1.04668 1.69928 1.15368 1.26253 1.32859 0.85306 0.79054 0.79734 0.76322 1.18713 1.18647 1.18727 0.91288 0.92847 0.89144 0.96307 0.94238 0.91548 0.90666 0.92166 0.86340 0.77213 0.77802 0.87917 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 10.28 71.98 0.74 -3.47 16 2 C 0.05 2.26 6.78 71.98 0.49 2.75 16 3 O -0.33 -16.34 8.37 -90.27 -0.76 -17.09 16 4 C -0.09 -4.67 5.73 23.08 0.13 -4.54 16 5 C -0.05 -2.36 5.88 -19.83 -0.12 -2.47 16 6 C -0.09 -3.37 9.78 71.24 0.70 -2.67 16 7 C -0.29 -13.00 9.54 22.57 0.22 -12.79 16 8 C 0.22 10.07 6.74 38.13 0.26 10.33 16 9 N -0.88 -31.40 9.09 -51.40 -0.47 -31.87 16 10 C -0.26 -14.10 8.51 22.82 0.19 -13.90 16 11 C 0.10 5.73 5.58 -21.22 -0.12 5.61 16 12 C -0.48 -27.26 8.71 23.38 0.20 -27.05 16 13 H 0.07 3.88 7.66 -2.91 -0.02 3.86 16 14 C 0.04 1.98 5.14 85.24 0.44 2.42 16 15 N -0.82 -43.51 10.97 21.82 0.24 -43.27 16 16 Si 0.98 39.69 29.59 68.60 2.03 41.72 16 17 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 18 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 19 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 20 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 21 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 22 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 23 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.07 2.17 8.14 -2.38 -0.02 2.16 16 26 H 0.07 2.29 8.08 -2.38 -0.02 2.27 16 27 H 0.06 2.16 7.52 -2.39 -0.02 2.15 16 28 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 29 H 0.40 11.55 8.84 -92.71 -0.82 10.74 16 30 H 0.39 13.23 8.83 -92.71 -0.82 12.42 16 31 H 0.10 5.75 6.19 -2.91 -0.02 5.73 16 32 H 0.29 13.70 8.30 -92.71 -0.77 12.94 16 Total: -1.00 -63.96 274.34 3.67 -60.29 By element: Atomic # 1 Polarization: 36.52 SS G_CDS: -0.50 Total: 36.02 kcal Atomic # 6 Polarization: -48.93 SS G_CDS: 3.13 Total: -45.80 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: -0.23 Total: -75.14 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.76 Total: -17.09 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Total: -63.96 3.67 -60.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718429.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.610 kcal (2) G-P(sol) polarization free energy of solvation -63.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds