Wall clock time and date at job start Mon Mar 30 2020 02:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42899 * 109.46691 * 2 1 4 4 C 1.35673 * 116.99758 * 179.97438 * 3 2 1 5 5 C 1.38043 * 120.21036 * 359.97438 * 4 3 2 6 6 C 1.39217 * 119.97585 * 179.97438 * 5 4 3 7 7 N 1.38926 * 119.79363 * 179.97438 * 6 5 4 8 8 C 1.39715 * 120.41088 * 0.02562 * 6 5 4 9 9 C 1.36230 * 120.42961 * 359.95798 * 8 6 5 10 10 C 1.50697 * 119.99831 * 180.02562 * 9 8 6 11 11 C 1.40860 * 120.00588 * 0.04370 * 9 8 6 12 12 C 1.40963 * 120.19877 * 179.97438 * 11 9 8 13 13 H 1.08004 * 120.00197 * 321.17087 * 12 11 9 14 14 C 1.39843 * 120.00182 * 141.17731 * 12 11 9 15 15 N 1.30947 * 119.99833 * 339.56368 * 14 12 11 16 16 Si 1.86807 * 119.99803 * 159.56687 * 14 12 11 17 17 H 1.48500 * 109.47188 * 59.99991 * 16 14 12 18 18 H 1.48502 * 109.46758 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46870 * 299.99589 * 16 14 12 20 20 H 1.08995 * 109.46888 * 179.97438 * 1 2 3 21 21 H 1.08989 * 109.47390 * 300.00377 * 1 2 3 22 22 H 1.09006 * 109.46603 * 60.00611 * 1 2 3 23 23 H 1.08995 * 109.47085 * 239.99882 * 2 1 3 24 24 H 1.08997 * 109.46585 * 119.99657 * 2 1 3 25 25 H 1.07991 * 120.00917 * 359.70640 * 5 4 3 26 26 H 0.96998 * 119.99686 * 0.02562 * 7 6 5 27 27 H 0.96995 * 119.99807 * 179.97438 * 7 6 5 28 28 H 1.08002 * 119.78729 * 179.97438 * 8 6 5 29 29 H 1.08996 * 109.47340 * 270.02160 * 10 9 8 30 30 H 1.09001 * 109.47007 * 30.02690 * 10 9 8 31 31 H 1.09002 * 109.46819 * 150.02102 * 10 9 8 32 32 H 0.97005 * 119.99968 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3513 1.5251 0.0005 5 6 4.1963 0.4335 0.0016 6 6 5.5757 0.6216 0.0016 7 7 6.4225 -0.4797 0.0032 8 6 6.1136 1.9110 0.0011 9 6 5.2952 3.0001 -0.0003 10 6 5.8859 4.3865 -0.0014 11 6 3.8968 2.8304 -0.0003 12 6 3.0462 3.9544 -0.0011 13 1 3.3013 4.8252 0.5847 14 6 1.8719 3.9421 -0.7605 15 7 1.7454 3.1020 -1.7569 16 14 0.4839 5.1242 -0.3532 17 1 0.9729 6.5213 -0.4714 18 1 -0.6405 4.9120 -1.2997 19 1 0.0162 4.8790 1.0348 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8898 22 1 -0.3633 0.5138 -0.8901 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 3.7874 -0.5660 0.0068 26 1 6.0522 -1.3762 0.0039 27 1 7.3840 -0.3521 0.0028 28 1 7.1853 2.0453 0.0015 29 1 6.0283 4.7216 1.0259 30 1 6.8470 4.3714 -0.5153 31 1 5.2095 5.0691 -0.5159 32 1 0.9307 3.0932 -2.2834 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575718466.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:34 Heat of formation + Delta-G solvation = -42.325424 kcal Electronic energy + Delta-G solvation = -15320.275891 eV Core-core repulsion = 12858.805751 eV Total energy + Delta-G solvation = -2461.470139 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.46001 -38.27241 -36.00286 -34.28476 -32.68409 -31.20776 -29.99449 -27.69139 -25.85181 -24.01443 -22.50582 -21.19592 -18.97221 -18.31574 -17.35915 -16.77977 -16.50146 -15.97099 -15.71754 -15.29282 -14.41989 -14.14709 -13.86594 -13.54406 -13.35260 -13.23255 -12.84361 -12.79800 -12.75635 -12.51967 -12.27355 -12.00077 -11.73466 -11.49546 -11.14116 -10.71933 -10.01961 -8.75292 -8.39354 -7.97107 -5.82781 1.09601 1.28484 1.43638 1.51726 1.59399 2.40149 2.95054 3.04730 3.46381 3.77687 4.16591 4.28784 4.41938 4.49186 4.58957 4.76530 4.89676 5.00846 5.01725 5.09118 5.14187 5.25854 5.33836 5.47963 5.56428 5.75794 5.99860 6.20674 6.38264 6.72051 6.93872 7.01894 7.29655 7.39147 7.55165 8.73173 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.023383 B = 0.013486 C = 0.008989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.178286 B = 2075.749084 C = 3114.167364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.048 3.952 3 O -0.296 6.296 4 C 0.104 3.896 5 C -0.283 4.283 6 C 0.157 3.843 7 N -0.875 5.875 8 C -0.215 4.215 9 C -0.128 4.128 10 C -0.080 4.080 11 C 0.012 3.988 12 C -0.505 4.505 13 H 0.062 0.938 14 C 0.056 3.944 15 N -0.820 5.820 16 Si 0.950 3.050 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.272 1.272 20 H 0.101 0.899 21 H 0.056 0.944 22 H 0.048 0.952 23 H 0.042 0.958 24 H 0.052 0.948 25 H 0.114 0.886 26 H 0.395 0.605 27 H 0.399 0.601 28 H 0.116 0.884 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.676 -5.745 2.363 6.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 O -0.209 6.209 4 C 0.057 3.943 5 C -0.306 4.306 6 C 0.054 3.946 7 N -0.418 5.418 8 C -0.238 4.238 9 C -0.130 4.130 10 C -0.137 4.137 11 C 0.009 3.991 12 C -0.537 4.537 13 H 0.080 0.920 14 C -0.158 4.158 15 N -0.448 5.448 16 Si 0.774 3.226 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.197 1.197 20 H 0.120 0.880 21 H 0.075 0.925 22 H 0.067 0.933 23 H 0.060 0.940 24 H 0.070 0.930 25 H 0.132 0.868 26 H 0.223 0.777 27 H 0.227 0.773 28 H 0.134 0.866 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.323 -5.610 2.169 6.158 hybrid contribution -0.471 -0.078 -0.034 0.479 sum 0.851 -5.688 2.135 6.135 Atomic orbital electron populations 1.21685 0.92248 1.03352 1.02175 1.22703 0.96489 0.83922 0.99705 1.86204 1.19707 1.26855 1.88094 1.19288 0.81794 0.93804 0.99427 1.20409 0.92956 0.97021 1.20203 1.17237 0.89153 0.88125 1.00059 1.41784 1.07296 1.04986 1.87751 1.19913 0.98417 0.90812 1.14613 1.19615 0.92296 0.95683 1.05438 1.20399 0.99183 0.93313 1.00757 1.17064 0.91721 0.90859 0.99463 1.18963 1.06160 1.01235 1.27318 0.91963 1.26080 0.99964 0.96751 0.92957 1.69845 1.26697 1.34527 1.13746 0.85761 0.78686 0.79484 0.78683 1.19075 1.20153 1.19699 0.88021 0.92481 0.93255 0.93964 0.92967 0.86835 0.77683 0.77260 0.86596 0.92418 0.91801 0.93181 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.43 10.28 71.98 0.74 -3.69 16 2 C 0.05 1.88 5.46 71.98 0.39 2.27 16 3 O -0.30 -15.13 7.03 -89.90 -0.63 -15.76 16 4 C 0.10 5.50 6.17 23.02 0.14 5.64 16 5 C -0.28 -13.01 8.86 22.46 0.20 -12.81 16 6 C 0.16 6.59 6.76 38.61 0.26 6.85 16 7 N -0.88 -26.91 9.05 -51.15 -0.46 -27.38 16 8 C -0.21 -9.41 9.44 22.16 0.21 -9.20 16 9 C -0.13 -6.31 5.90 -19.69 -0.12 -6.43 16 10 C -0.08 -3.36 9.45 71.23 0.67 -2.68 16 11 C 0.01 0.68 5.37 -21.17 -0.11 0.56 16 12 C -0.51 -28.67 7.58 23.33 0.18 -28.49 16 13 H 0.06 3.47 7.48 -2.91 -0.02 3.45 16 14 C 0.06 3.04 4.39 85.21 0.37 3.42 16 15 N -0.82 -46.07 11.26 21.81 0.25 -45.83 16 16 Si 0.95 42.40 29.61 68.60 2.03 44.43 16 17 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 18 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 20 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 21 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 22 H 0.05 1.70 8.14 -2.38 -0.02 1.69 16 23 H 0.04 1.64 7.67 -2.39 -0.02 1.62 16 24 H 0.05 1.87 7.66 -2.39 -0.02 1.86 16 25 H 0.11 4.64 6.29 -2.92 -0.02 4.62 16 26 H 0.40 10.41 8.83 -92.71 -0.82 9.59 16 27 H 0.40 10.17 8.83 -92.71 -0.82 9.35 16 28 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 29 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.06 2.29 8.08 -2.39 -0.02 2.27 16 31 H 0.05 2.25 6.99 -2.39 -0.02 2.23 16 32 H 0.27 14.28 8.30 -92.70 -0.77 13.51 16 Total: -1.00 -65.05 268.66 3.62 -61.43 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: -0.50 Total: 27.67 kcal Atomic # 6 Polarization: -47.50 SS G_CDS: 2.94 Total: -44.56 kcal Atomic # 7 Polarization: -72.99 SS G_CDS: -0.22 Total: -73.20 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.63 Total: -15.76 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -65.05 3.62 -61.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718466.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.100 kcal (2) G-P(sol) polarization free energy of solvation -65.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds