Wall clock time and date at job start Mon Mar 30 2020 02:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42907 * 109.47121 * 2 1 4 4 C 1.35700 * 116.99808 * 180.02562 * 3 2 1 5 5 C 1.38428 * 120.13643 * 0.28379 * 4 3 2 6 6 C 1.38194 * 120.24715 * 180.27805 * 5 4 3 7 7 C 1.50706 * 119.74030 * 179.73754 * 6 5 4 8 8 C 1.39512 * 120.51587 * 359.71643 * 6 5 4 9 9 N 1.39844 * 119.87047 * 180.02562 * 8 6 5 10 10 C 1.38065 * 120.26173 * 0.02562 * 8 6 5 11 11 C 1.40656 * 119.74372 * 0.02562 * 10 8 6 12 12 C 1.41136 * 120.25079 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99649 * 205.75995 * 12 11 10 14 14 C 1.39903 * 119.99958 * 25.48725 * 12 11 10 15 15 N 1.30881 * 120.00213 * 16.89712 * 14 12 11 16 16 Si 1.86800 * 120.00038 * 196.89204 * 14 12 11 17 17 H 1.48499 * 109.46768 * 60.00098 * 16 14 12 18 18 H 1.48493 * 109.47111 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47251 * 300.00377 * 16 14 12 20 20 H 1.08998 * 109.47093 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46996 * 299.99846 * 1 2 3 22 22 H 1.09002 * 109.47059 * 59.99264 * 1 2 3 23 23 H 1.08995 * 109.47017 * 240.00742 * 2 1 3 24 24 H 1.08998 * 109.47400 * 120.00355 * 2 1 3 25 25 H 1.08005 * 119.87605 * 359.97438 * 5 4 3 26 26 H 1.08993 * 109.47106 * 269.97494 * 7 6 5 27 27 H 1.09003 * 109.47188 * 29.97919 * 7 6 5 28 28 H 1.09003 * 109.47079 * 149.97488 * 7 6 5 29 29 H 0.96999 * 120.00208 * 179.97438 * 9 8 6 30 30 H 0.97006 * 119.99889 * 359.97438 * 9 8 6 31 31 H 1.07997 * 120.12926 * 180.02562 * 10 8 6 32 32 H 0.96995 * 120.00150 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3516 1.5251 -0.0005 5 6 4.1975 0.4293 -0.0070 6 6 5.5678 0.6076 -0.0018 7 6 6.4781 -0.5935 -0.0029 8 6 6.1152 1.8909 0.0041 9 7 7.5039 2.0557 0.0088 10 6 5.2913 2.9987 0.0053 11 6 3.8949 2.8299 0.0011 12 6 3.0427 3.9549 0.0017 13 1 2.0441 3.8756 0.4053 14 6 3.4935 5.1743 -0.5153 15 7 4.5501 5.2073 -1.2870 16 14 2.5873 6.7552 -0.1044 17 1 2.5971 6.9634 1.3659 18 1 3.2599 7.8989 -0.7712 19 1 1.1844 6.6600 -0.5815 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5140 -0.8899 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 3.7848 -0.5688 -0.0112 26 1 6.6944 -0.8864 1.0244 27 1 5.9898 -1.4189 -0.5209 28 1 7.4084 -0.3439 -0.5131 29 1 7.8865 2.9470 0.0125 30 1 8.0846 1.2786 0.0084 31 1 5.7173 3.9911 0.0094 32 1 4.8629 6.0527 -1.6451 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575718835.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:51 Heat of formation + Delta-G solvation = -30.719381 kcal Electronic energy + Delta-G solvation = -14964.003919 eV Core-core repulsion = 12503.037056 eV Total energy + Delta-G solvation = -2460.966863 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.64775 -36.72347 -34.15800 -32.41927 -31.13025 -30.32728 -27.39101 -26.56101 -23.80873 -22.68273 -20.39127 -19.80083 -17.42109 -16.21050 -15.97122 -15.17641 -15.05802 -14.56509 -13.83427 -12.92223 -12.79400 -12.56757 -12.43595 -12.17070 -12.04127 -11.65992 -11.40858 -11.07303 -11.00026 -10.90486 -10.46311 -10.39726 -10.13953 -9.93672 -9.29649 -9.10902 -8.44382 -7.24606 -6.66946 -5.89758 -4.14070 2.85790 3.13549 3.17579 3.20589 3.35444 4.04027 4.49823 4.73904 5.05383 5.48495 5.64352 5.74276 5.84593 5.99411 6.05519 6.15261 6.32174 6.35425 6.40465 6.44938 6.58178 7.02853 7.17084 7.30657 7.41551 7.71384 7.84170 7.96025 8.14433 8.45807 8.73611 8.81864 8.97910 9.00258 9.27090 10.32193 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.018820 B = 0.012496 C = 0.007703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.457172 B = 2240.121371 C = 3633.943744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.060 3.940 3 O -0.311 6.311 4 C -0.018 4.018 5 C -0.142 4.142 6 C -0.254 4.254 7 C -0.076 4.076 8 C 0.203 3.797 9 N -0.894 5.894 10 C -0.216 4.216 11 C 0.130 3.870 12 C -0.444 4.444 13 H 0.081 0.919 14 C 0.074 3.926 15 N -0.796 5.796 16 Si 0.907 3.093 17 H -0.265 1.265 18 H -0.280 1.280 19 H -0.266 1.266 20 H 0.064 0.936 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.044 0.956 24 H 0.043 0.957 25 H 0.093 0.907 26 H 0.038 0.962 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.386 0.614 30 H 0.381 0.619 31 H 0.124 0.876 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.120 -5.197 1.657 5.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.017 4.017 3 O -0.226 6.226 4 C -0.062 4.062 5 C -0.161 4.161 6 C -0.259 4.259 7 C -0.133 4.133 8 C 0.103 3.897 9 N -0.437 5.437 10 C -0.240 4.240 11 C 0.126 3.874 12 C -0.474 4.474 13 H 0.099 0.901 14 C -0.143 4.143 15 N -0.422 5.422 16 Si 0.731 3.269 17 H -0.190 1.190 18 H -0.206 1.206 19 H -0.191 1.191 20 H 0.083 0.917 21 H 0.079 0.921 22 H 0.080 0.920 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.112 0.888 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.212 0.788 30 H 0.208 0.792 31 H 0.141 0.859 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.229 -4.899 1.506 5.130 hybrid contribution 0.141 0.491 0.021 0.511 sum -0.088 -4.408 1.527 4.666 Atomic orbital electron populations 1.21716 0.94413 1.01354 1.03004 1.22379 0.94453 0.85112 0.99729 1.85949 1.20798 1.25113 1.90780 1.19067 0.80585 0.94061 1.12509 1.20224 0.93075 0.95670 1.07163 1.18373 0.92902 0.91928 1.22691 1.20229 0.97717 0.96082 0.99248 1.17415 0.82873 0.93219 0.96211 1.42390 1.04107 1.08769 1.88399 1.20484 0.91961 0.96262 1.15338 1.16766 0.91622 0.88916 0.90094 1.19377 1.00514 0.93043 1.34496 0.90103 1.25877 0.94784 1.00743 0.92856 1.69871 1.21670 1.27963 1.22684 0.86396 0.80358 0.80310 0.79788 1.18950 1.20555 1.19069 0.91719 0.92063 0.91966 0.93775 0.93853 0.88850 0.94289 0.93864 0.94000 0.78796 0.79204 0.85880 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 10.28 37.16 0.38 -1.79 16 2 C 0.06 1.10 5.46 37.16 0.20 1.30 16 3 O -0.31 -7.51 9.42 -18.80 -0.18 -7.68 16 4 C -0.02 -0.46 6.72 -38.33 -0.26 -0.71 16 5 C -0.14 -3.33 8.66 -39.53 -0.34 -3.67 16 6 C -0.25 -5.77 5.92 -104.16 -0.62 -6.39 16 7 C -0.08 -1.37 9.56 36.01 0.34 -1.02 16 8 C 0.20 4.80 6.72 -83.79 -0.56 4.24 16 9 N -0.89 -16.96 8.99 32.40 0.29 -16.67 16 10 C -0.22 -5.73 8.51 -38.73 -0.33 -6.06 16 11 C 0.13 3.61 5.57 -106.71 -0.59 3.01 16 12 C -0.44 -12.37 8.71 -37.86 -0.33 -12.70 16 13 H 0.08 2.24 7.65 -52.49 -0.40 1.83 16 14 C 0.07 1.92 5.15 -17.33 -0.09 1.83 16 15 N -0.80 -21.05 10.97 55.55 0.61 -20.44 16 16 Si 0.91 19.42 29.59 -169.99 -5.03 14.39 16 17 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 18 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 20 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.04 0.78 7.65 -51.93 -0.40 0.39 16 24 H 0.04 0.76 7.67 -51.93 -0.40 0.36 16 25 H 0.09 1.95 6.28 -52.48 -0.33 1.62 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.72 8.08 -51.93 -0.42 0.30 16 28 H 0.04 0.69 6.52 -51.93 -0.34 0.35 16 29 H 0.39 6.78 8.83 -40.82 -0.36 6.42 16 30 H 0.38 6.21 6.79 -40.82 -0.28 5.93 16 31 H 0.12 3.34 6.20 -52.49 -0.33 3.01 16 32 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 LS Contribution 268.08 15.07 4.04 4.04 Total: -1.00 -29.56 268.08 -6.53 -36.10 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -4.07 Total: 12.23 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: -2.19 Total: -21.96 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.90 Total: -37.11 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -0.18 Total: -7.68 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.39 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.56 -6.53 -36.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718835.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.377 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds