Wall clock time and date at job start Mon Mar 30 2020 03:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30863 * 125.81709 * 2 1 4 4 N 1.40071 * 108.35954 * 179.97438 * 3 2 1 5 5 C 1.46502 * 126.07053 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47108 * 304.27045 * 5 4 3 7 7 C 1.50704 * 115.56231 * 320.15120 * 6 5 4 8 8 H 1.07997 * 119.99967 * 97.64166 * 7 6 5 9 9 C 1.37881 * 119.99827 * 277.64549 * 7 6 5 10 10 N 1.31517 * 120.00203 * 8.64952 * 9 7 6 11 11 Si 1.86797 * 119.99933 * 188.65631 * 9 7 6 12 12 H 1.48503 * 109.47286 * 89.99769 * 11 9 7 13 13 H 1.48499 * 109.47150 * 209.99483 * 11 9 7 14 14 H 1.48494 * 109.47155 * 329.99894 * 11 9 7 15 15 C 1.52994 * 117.49851 * 174.45903 * 6 5 4 16 16 C 1.53000 * 60.00237 * 252.50966 * 15 6 5 17 17 C 1.35977 * 107.85811 * 0.23756 * 4 3 2 18 18 C 1.35706 * 107.55075 * 359.61289 * 17 4 3 19 19 N 1.40799 * 126.06837 * 180.14732 * 18 17 4 20 20 H 1.08996 * 109.47429 * 90.02731 * 1 2 3 21 21 H 1.09005 * 109.47391 * 210.03073 * 1 2 3 22 22 H 1.09001 * 109.47151 * 330.02717 * 1 2 3 23 23 H 1.09007 * 109.46963 * 184.27446 * 5 4 3 24 24 H 1.08994 * 109.47161 * 64.27326 * 5 4 3 25 25 H 0.96990 * 120.00166 * 174.98721 * 10 9 7 26 26 H 1.08998 * 117.49741 * 145.02272 * 15 6 5 27 27 H 1.09000 * 117.49891 * 0.02562 * 15 6 5 28 28 H 1.09001 * 117.49614 * 107.48717 * 16 15 6 29 29 H 1.08994 * 117.50090 * 252.51047 * 16 15 6 30 30 H 1.08000 * 126.22394 * 179.75964 * 17 4 3 31 31 H 0.96995 * 119.99834 * 180.28311 * 19 18 17 32 32 H 0.96998 * 119.99707 * 0.28382 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2728 1.0612 0.0000 4 7 3.6090 0.6409 0.0006 5 6 4.7871 1.5118 0.0003 6 6 4.7146 2.4673 -1.1925 7 6 4.2042 1.8666 -2.4769 8 1 3.1686 1.9910 -2.7571 9 6 5.0592 1.1580 -3.2942 10 7 6.2706 0.8601 -2.8779 11 14 4.4970 0.6214 -4.9928 12 1 4.8281 1.6793 -5.9810 13 1 5.1869 -0.6391 -5.3673 14 1 3.0291 0.3976 -4.9806 15 6 5.7915 3.5490 -1.2975 16 6 4.3617 3.9284 -0.9068 17 6 3.6185 -0.7188 -0.0044 18 6 2.3275 -1.1371 0.0007 19 7 1.8897 -2.4753 0.0010 20 1 -0.3634 -0.0005 -1.0276 21 1 -0.3634 -0.8897 0.5143 22 1 -0.3633 0.8902 0.5134 23 1 5.6885 0.9036 -0.0757 24 1 4.8139 2.0871 0.9256 25 1 6.8464 0.3002 -3.4218 26 1 6.1308 3.8261 -2.2956 27 1 6.5518 3.5796 -0.5171 28 1 4.1812 4.2089 0.1310 29 1 3.7604 4.4551 -1.6477 30 1 4.4942 -1.3509 -0.0090 31 1 0.9406 -2.6750 0.0008 32 1 2.5373 -3.1974 0.0015 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697728524.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:38 Heat of formation + Delta-G solvation = 99.784943 kcal Electronic energy + Delta-G solvation = -15213.809325 eV Core-core repulsion = 12790.794305 eV Total energy + Delta-G solvation = -2423.015020 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.13998 -36.65165 -33.71968 -31.99774 -31.91711 -28.75137 -27.43181 -25.49944 -24.11454 -21.12715 -20.30348 -19.43517 -18.76593 -16.64466 -15.43623 -15.40929 -14.57078 -14.42778 -14.12401 -13.74097 -13.12565 -12.91444 -12.34194 -12.13162 -11.57942 -11.56439 -11.37502 -10.97857 -10.82458 -10.52798 -10.22889 -10.06527 -9.67876 -9.51164 -8.86731 -8.47475 -8.20081 -8.04817 -6.35968 -6.04397 -4.05906 2.91113 3.29632 3.36271 3.42182 3.56126 3.75440 4.42944 4.73512 5.23769 5.25443 5.51690 5.59895 5.90205 6.04584 6.06232 6.09306 6.26818 6.33213 6.38336 6.48476 6.64058 6.77768 6.91914 7.02718 7.32206 7.34284 7.45063 7.91445 8.04696 8.30299 8.45883 8.46651 8.81495 8.95291 9.58788 11.04844 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022846 B = 0.011902 C = 0.009624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.309136 B = 2351.904699 C = 2908.557330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.003 3.997 3 N -0.257 5.257 4 N -0.314 5.314 5 C 0.178 3.822 6 C 0.035 3.965 7 C -0.474 4.474 8 H 0.059 0.941 9 C 0.073 3.927 10 N -0.885 5.885 11 Si 0.887 3.113 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.275 1.275 15 C -0.160 4.160 16 C -0.200 4.200 17 C -0.011 4.011 18 C 0.036 3.964 19 N -0.882 5.882 20 H 0.064 0.936 21 H 0.061 0.939 22 H 0.065 0.935 23 H 0.093 0.907 24 H 0.051 0.949 25 H 0.259 0.741 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.156 0.844 31 H 0.388 0.612 32 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.132 -3.970 5.819 8.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.164 4.164 3 N -0.083 5.083 4 N -0.098 5.098 5 C 0.057 3.943 6 C 0.034 3.966 7 C -0.512 4.512 8 H 0.077 0.923 9 C -0.130 4.130 10 N -0.523 5.523 11 Si 0.715 3.285 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.200 1.200 15 C -0.198 4.198 16 C -0.237 4.237 17 C -0.160 4.160 18 C -0.072 4.072 19 N -0.430 5.430 20 H 0.083 0.917 21 H 0.080 0.920 22 H 0.084 0.916 23 H 0.111 0.889 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.174 0.826 31 H 0.215 0.785 32 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -4.732 -2.535 5.742 7.860 hybrid contribution -0.082 -1.675 -1.154 2.035 sum -4.813 -4.210 4.587 7.870 Atomic orbital electron populations 1.19904 0.88212 1.01755 1.01792 1.21741 0.96063 0.89940 1.08650 1.77075 0.87374 1.22142 1.21733 1.47950 1.04346 1.03458 1.54073 1.21326 0.82932 0.92601 0.97476 1.19003 0.98366 0.85379 0.93845 1.20286 0.95473 1.33715 1.01704 0.92327 1.24913 0.94649 0.95612 0.97784 1.69938 1.07902 1.36535 1.37925 0.86663 0.78944 0.77860 0.84996 1.20696 1.21360 1.19971 1.22597 0.90378 1.06374 1.00495 1.22983 0.99126 1.02488 0.99091 1.21545 0.96930 0.85867 1.11657 1.17405 0.91523 0.85841 1.12460 1.41301 1.08145 1.02240 1.91361 0.91717 0.92039 0.91647 0.88890 0.93072 0.93117 0.89965 0.91738 0.91548 0.90436 0.82614 0.78494 0.78526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 10.29 36.01 0.37 -0.50 16 2 C 0.00 0.05 7.22 -82.26 -0.59 -0.54 16 3 N -0.26 -5.84 12.42 33.74 0.42 -5.42 16 4 N -0.31 -7.08 3.03 -60.99 -0.18 -7.27 16 5 C 0.18 3.99 6.59 -4.04 -0.03 3.96 16 6 C 0.04 0.86 1.57 -155.66 -0.25 0.62 16 7 C -0.47 -13.06 8.14 -34.44 -0.28 -13.34 16 8 H 0.06 1.73 7.83 -52.49 -0.41 1.32 16 9 C 0.07 2.00 5.39 -17.82 -0.10 1.90 16 10 N -0.89 -24.46 13.11 55.43 0.73 -23.73 16 11 Si 0.89 21.83 29.55 -169.99 -5.02 16.81 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 14 H -0.27 -6.89 7.11 56.52 0.40 -6.48 16 15 C -0.16 -3.67 9.68 -26.73 -0.26 -3.93 16 16 C -0.20 -4.44 9.88 -26.73 -0.26 -4.71 16 17 C -0.01 -0.22 11.52 -16.62 -0.19 -0.41 16 18 C 0.04 0.68 7.21 -83.90 -0.60 0.07 16 19 N -0.88 -12.79 9.20 32.30 0.30 -12.50 16 20 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 21 H 0.06 0.75 7.69 -51.93 -0.40 0.35 16 22 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.09 2.10 8.07 -51.92 -0.42 1.69 16 24 H 0.05 1.04 7.95 -51.93 -0.41 0.63 16 25 H 0.26 6.92 8.32 -40.82 -0.34 6.59 16 26 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.07 1.35 8.08 -51.93 -0.42 0.93 16 29 H 0.08 1.75 8.14 -51.93 -0.42 1.32 16 30 H 0.16 2.91 8.06 -52.49 -0.42 2.49 16 31 H 0.39 4.76 8.34 -40.82 -0.34 4.42 16 32 H 0.39 4.90 8.96 -40.82 -0.37 4.53 16 LS Contribution 280.14 15.07 4.22 4.22 Total: -1.00 -30.32 280.14 -6.17 -36.49 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -4.44 Total: 8.27 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -2.19 Total: -16.87 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: 1.26 Total: -48.92 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.32 -6.17 -36.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697728524.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.280 kcal (2) G-P(sol) polarization free energy of solvation -30.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds