Wall clock time and date at job start Mon Mar 30 2020 02:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46955 * 2 1 4 4 C 1.53003 * 109.47229 * 240.00892 * 2 1 3 5 5 N 1.46498 * 109.47224 * 179.97438 * 4 2 1 6 6 C 1.36934 * 120.00376 * 179.97438 * 5 4 2 7 7 H 1.08002 * 119.99375 * 359.97438 * 6 5 4 8 8 C 1.38814 * 120.00434 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99868 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00038 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47283 * 59.99604 * 10 8 6 12 12 H 1.48501 * 109.47142 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47154 * 299.99818 * 10 8 6 14 14 O 1.42894 * 109.47313 * 120.00299 * 2 1 3 15 15 C 1.35895 * 117.00154 * 275.09211 * 14 2 1 16 16 C 1.38737 * 120.05812 * 5.46272 * 15 14 2 17 17 C 1.38143 * 119.94711 * 180.29652 * 16 15 14 18 18 C 1.38267 * 120.05366 * 359.47123 * 17 16 15 19 19 C 1.38272 * 120.11130 * 0.50694 * 18 17 16 20 20 C 1.38141 * 120.05470 * 359.76792 * 19 18 17 21 21 H 1.09002 * 109.47242 * 59.99772 * 1 2 3 22 22 H 1.09001 * 109.46584 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.46872 * 299.99383 * 1 2 3 24 24 H 1.09005 * 109.46831 * 299.99777 * 4 2 1 25 25 H 1.09002 * 109.47551 * 59.99525 * 4 2 1 26 26 H 0.97005 * 120.00040 * 359.97438 * 5 4 2 27 27 H 0.96990 * 119.99881 * 180.02562 * 9 8 6 28 28 H 1.08001 * 120.01964 * 0.02750 * 16 15 14 29 29 H 1.07993 * 119.97132 * 179.69852 * 17 16 15 30 30 H 1.08001 * 119.94562 * 180.25587 * 18 17 16 31 31 H 1.08000 * 119.97058 * 179.74941 * 19 18 17 32 32 H 1.08002 * 120.02545 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2494 5 7 3.5050 -0.7205 -1.2497 6 6 4.1898 -1.3136 -2.2765 7 1 3.6497 -1.7822 -3.0860 8 6 5.5779 -1.3136 -2.2766 9 7 6.2360 -0.7430 -1.2898 10 14 6.5119 -2.1234 -3.6770 11 1 6.1531 -1.4636 -4.9581 12 1 7.9719 -1.9870 -3.4424 13 1 6.1533 -3.5628 -3.7441 14 8 2.0064 -0.6737 1.1667 15 6 2.1107 0.0620 2.3045 16 6 1.6563 1.3726 2.3288 17 6 1.7691 2.1203 3.4849 18 6 2.3244 1.5600 4.6205 19 6 2.7777 0.2539 4.5990 20 6 2.6723 -0.4961 3.4438 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.6767 -1.7488 -1.2495 25 1 1.6767 -0.2072 -2.1393 26 1 3.9901 -0.3000 -0.5224 27 1 7.2059 -0.7427 -1.2900 28 1 1.2187 1.8092 1.4432 29 1 1.4199 3.1421 3.5028 30 1 2.4080 2.1449 5.5246 31 1 3.2147 -0.1802 5.4862 32 1 3.0268 -1.5162 3.4274 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700370051.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:56 Heat of formation + Delta-G solvation = -24.902150 kcal Electronic energy + Delta-G solvation = -14648.318986 eV Core-core repulsion = 12187.604377 eV Total energy + Delta-G solvation = -2460.714609 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.16674 -38.63972 -36.46417 -34.03593 -32.20472 -31.52794 -30.49735 -27.46849 -24.71492 -24.07484 -23.25171 -21.67118 -19.33888 -19.15853 -17.19072 -16.81213 -16.58873 -16.07758 -15.72151 -15.19284 -15.10601 -14.53080 -14.35219 -13.87627 -13.60188 -13.42756 -13.12118 -12.87356 -12.75045 -12.40809 -12.24554 -12.00630 -11.95628 -11.62316 -11.48213 -10.97527 -9.89819 -9.07303 -9.04290 -7.95840 -5.26556 0.44096 0.56463 1.45858 1.50275 1.56368 2.32305 2.54837 2.91232 3.37425 3.71070 3.87272 3.98526 4.03036 4.15710 4.31503 4.38474 4.51517 4.55984 4.71590 4.75047 4.82977 4.93619 5.04096 5.13664 5.22165 5.45623 5.46612 5.52828 5.63095 5.96674 6.24159 6.59854 7.30343 8.04053 8.28333 9.27596 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034130 B = 0.006799 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.203670 B = 4117.079930 C = 4652.472393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.079 3.921 3 H 0.070 0.930 4 C 0.152 3.848 5 N -0.744 5.744 6 C -0.252 4.252 7 H 0.079 0.921 8 C -0.077 4.077 9 N -0.971 5.971 10 Si 0.980 3.020 11 H -0.274 1.274 12 H -0.295 1.295 13 H -0.278 1.278 14 O -0.326 6.326 15 C 0.112 3.888 16 C -0.223 4.223 17 C -0.084 4.084 18 C -0.166 4.166 19 C -0.083 4.083 20 C -0.182 4.182 21 H 0.094 0.906 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.025 0.975 25 H 0.055 0.945 26 H 0.372 0.628 27 H 0.251 0.749 28 H 0.136 0.864 29 H 0.151 0.849 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.958 5.359 9.506 16.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.023 3.977 3 H 0.088 0.912 4 C 0.026 3.974 5 N -0.387 5.387 6 C -0.383 4.383 7 H 0.097 0.903 8 C -0.269 4.269 9 N -0.621 5.621 10 Si 0.808 3.192 11 H -0.199 1.199 12 H -0.221 1.221 13 H -0.204 1.204 14 O -0.241 6.241 15 C 0.067 3.933 16 C -0.241 4.241 17 C -0.102 4.102 18 C -0.184 4.184 19 C -0.100 4.100 20 C -0.201 4.201 21 H 0.113 0.887 22 H 0.085 0.915 23 H 0.091 0.909 24 H 0.043 0.957 25 H 0.073 0.927 26 H 0.204 0.796 27 H 0.060 0.940 28 H 0.154 0.846 29 H 0.169 0.831 30 H 0.170 0.830 31 H 0.169 0.831 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.923 5.057 9.292 15.940 hybrid contribution 0.947 -0.328 -0.605 1.170 sum -10.976 4.729 8.688 14.775 Atomic orbital electron populations 1.22242 0.92028 1.03735 1.04114 1.22746 0.95809 0.96149 0.82998 0.91201 1.21012 0.84135 0.97975 0.94267 1.42487 1.01303 1.68571 1.26348 1.19656 0.89775 1.28231 1.00649 0.90266 1.25671 0.97434 1.02665 1.01175 1.69849 1.06690 1.50979 1.34569 0.85124 0.76962 0.78375 0.78744 1.19935 1.22086 1.20387 1.86169 1.81390 1.39256 1.17242 1.19458 0.95514 0.91500 0.86873 1.21524 1.07469 0.93866 1.01274 1.21326 0.96765 1.00278 0.91784 1.21421 1.01638 0.95635 0.99680 1.21275 0.97338 0.94478 0.96944 1.20707 1.04962 1.01798 0.92627 0.88743 0.91524 0.90915 0.95744 0.92726 0.79623 0.94000 0.84600 0.83107 0.82964 0.83108 0.86414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 9.17 71.98 0.66 -3.47 16 2 C 0.08 2.76 2.31 30.60 0.07 2.83 16 3 H 0.07 2.43 6.32 -2.38 -0.02 2.41 16 4 C 0.15 6.40 5.95 86.38 0.51 6.92 16 5 N -0.74 -40.46 5.49 -343.44 -1.89 -42.34 16 6 C -0.25 -14.67 9.99 84.03 0.84 -13.83 16 7 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 8 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 9 N -0.97 -61.96 13.06 21.65 0.28 -61.67 16 10 Si 0.98 47.31 29.55 68.60 2.03 49.34 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 14 O -0.33 -13.03 9.55 -92.36 -0.88 -13.91 16 15 C 0.11 3.95 6.60 22.51 0.15 4.10 16 16 C -0.22 -6.50 8.24 22.37 0.18 -6.32 16 17 C -0.08 -1.98 10.04 22.25 0.22 -1.75 16 18 C -0.17 -3.69 10.04 22.28 0.22 -3.46 16 19 C -0.08 -2.09 10.04 22.25 0.22 -1.87 16 20 C -0.18 -5.97 9.99 22.37 0.22 -5.75 16 21 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 22 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.07 1.65 6.90 -2.39 -0.02 1.64 16 24 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 25 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.37 21.96 7.54 -92.70 -0.70 21.26 16 27 H 0.25 15.49 8.31 -92.72 -0.77 14.72 16 28 H 0.14 3.60 5.43 -2.91 -0.02 3.58 16 29 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 30 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 31 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 32 H 0.12 3.94 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -70.43 273.98 3.73 -66.70 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: 0.41 Total: 28.63 kcal Atomic # 6 Polarization: -30.52 SS G_CDS: 3.78 Total: -26.74 kcal Atomic # 7 Polarization: -102.41 SS G_CDS: -1.60 Total: -104.02 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.88 Total: -13.91 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -70.43 3.73 -66.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700370051.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.802 kcal (2) G-P(sol) polarization free energy of solvation -70.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds