Wall clock time and date at job start Mon Mar 30 2020 03:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99705 * 2 1 4 4 H 1.48497 * 109.46424 * 269.99741 * 3 2 1 5 5 H 1.48498 * 109.46986 * 29.99618 * 3 2 1 6 6 H 1.48503 * 109.47043 * 150.00096 * 3 2 1 7 7 C 1.37878 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46820 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46700 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46916 * 179.97438 * 11 10 9 13 13 C 1.46905 * 110.99870 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47066 * 180.02562 * 13 12 11 15 15 N 1.31792 * 119.12473 * 269.72942 * 14 13 12 16 16 C 1.32332 * 120.81996 * 179.75979 * 15 14 13 17 17 C 1.38599 * 119.10249 * 0.50498 * 16 15 14 18 18 C 1.38596 * 118.40026 * 359.75059 * 17 16 15 19 19 N 1.31797 * 119.12255 * 89.99984 * 14 13 12 20 20 H 0.97002 * 120.00555 * 359.97438 * 1 2 3 21 21 H 1.08993 * 109.47135 * 59.98994 * 9 7 2 22 22 H 1.09005 * 109.46741 * 299.99708 * 9 7 2 23 23 H 1.08995 * 109.47485 * 60.00257 * 10 9 7 24 24 H 1.08996 * 109.47010 * 299.99049 * 10 9 7 25 25 H 1.09004 * 109.46889 * 60.00145 * 11 10 9 26 26 H 1.08995 * 109.47384 * 299.99786 * 11 10 9 27 27 H 1.00901 * 111.00067 * 303.95263 * 12 11 10 28 28 H 1.09001 * 109.46798 * 300.00327 * 13 12 11 29 29 H 1.08998 * 109.46961 * 60.00043 * 13 12 11 30 30 H 1.08004 * 120.44869 * 180.23510 * 16 15 14 31 31 H 1.08005 * 120.80099 * 179.76584 * 17 16 15 32 32 H 1.08003 * 120.44925 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9870 0.0012 12 7 2.4351 -6.1036 0.0006 13 6 1.7349 -7.3950 0.0005 14 6 2.7444 -8.5138 0.0005 15 7 3.1701 -8.9937 -1.1507 16 6 4.0596 -9.9727 -1.1899 17 6 4.5350 -10.4996 0.0006 18 6 4.0599 -9.9724 1.1911 19 7 3.1741 -8.9900 1.1519 20 1 -0.4851 0.8400 0.0004 21 1 0.6247 -2.5571 -0.8895 22 1 0.6242 -2.5567 0.8904 23 1 2.8721 -3.6043 0.8905 24 1 2.8720 -3.6043 -0.8895 25 1 0.8535 -5.0450 -0.8886 26 1 0.8542 -5.0446 0.8914 27 1 3.0694 -6.0365 -0.7813 28 1 1.1103 -7.4695 0.8907 29 1 1.1097 -7.4692 -0.8892 30 1 4.4071 -10.3588 -2.1368 31 1 5.2584 -11.3015 0.0006 32 1 4.4082 -10.3578 2.1380 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705220416.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:49 Heat of formation + Delta-G solvation = 35.019177 kcal Electronic energy + Delta-G solvation = -13788.500464 eV Core-core repulsion = 11362.676989 eV Total energy + Delta-G solvation = -2425.823475 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.15530 -36.51119 -33.87170 -33.78588 -32.44112 -30.80655 -27.41113 -25.17500 -24.72385 -22.66886 -22.00747 -20.11245 -17.72511 -17.19809 -16.26704 -15.66500 -15.43138 -15.12160 -14.44926 -14.04242 -13.79947 -13.74964 -13.15529 -12.46541 -12.01982 -11.63074 -11.37088 -11.01725 -10.99288 -10.80899 -10.54313 -10.47823 -9.83822 -9.65335 -9.39390 -9.29107 -9.01744 -8.30231 -8.20624 -5.95410 -3.97271 0.67071 0.91045 3.35515 3.41378 3.45424 3.50601 3.75760 3.98362 4.36924 4.49174 4.66386 4.76305 4.87006 5.12956 5.32936 5.40385 5.60807 5.66052 5.83547 5.94943 6.18297 6.34934 6.73358 6.77285 6.82207 7.17302 7.28632 7.56989 7.73330 7.88473 7.95555 8.05268 8.48616 9.09883 9.66465 11.16076 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.069615 B = 0.003874 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.115342 B = 7226.174041 C = 7328.374752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.061 3.939 12 N -0.682 5.682 13 C 0.124 3.876 14 C 0.330 3.670 15 N -0.517 5.517 16 C 0.147 3.853 17 C -0.236 4.236 18 C 0.147 3.853 19 N -0.500 5.500 20 H 0.260 0.740 21 H 0.014 0.986 22 H 0.017 0.983 23 H 0.056 0.944 24 H 0.045 0.955 25 H 0.029 0.971 26 H 0.071 0.929 27 H 0.340 0.660 28 H 0.097 0.903 29 H 0.056 0.944 30 H 0.167 0.833 31 H 0.146 0.854 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.082 -21.284 -0.766 22.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.067 4.067 12 N -0.314 5.314 13 C -0.007 4.007 14 C 0.062 3.938 15 N -0.232 5.232 16 C -0.019 4.019 17 C -0.259 4.259 18 C -0.019 4.019 19 N -0.214 5.214 20 H 0.069 0.931 21 H 0.033 0.967 22 H 0.035 0.965 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.047 0.953 26 H 0.090 0.910 27 H 0.158 0.842 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.184 0.816 31 H 0.164 0.836 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.321 -20.414 -0.072 21.370 hybrid contribution 0.885 0.073 -0.943 1.295 sum 7.206 -20.341 -1.015 21.604 Atomic orbital electron populations 1.69966 1.06048 1.26531 1.51091 1.25031 0.94851 0.99247 0.95416 0.86593 0.79879 0.83486 0.78044 1.20723 1.21247 1.19859 1.21264 0.93070 0.91068 1.50262 0.92680 1.19069 0.94007 0.91290 0.97206 1.21628 0.99240 0.92814 1.00809 1.22170 0.93972 0.90273 1.00311 1.60558 1.20506 1.00306 1.50009 1.20651 0.91824 0.85563 1.02669 1.23222 0.93418 0.93922 0.83262 1.68291 1.12368 1.11756 1.30759 1.23236 0.89937 0.89969 0.98805 1.22912 1.03940 1.03885 0.95116 1.23308 0.90008 0.89807 0.98799 1.68313 1.11755 1.10778 1.30569 0.93055 0.96723 0.96458 0.92488 0.93622 0.95322 0.91042 0.84238 0.88437 0.92551 0.81577 0.83607 0.81515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.29 55.43 0.74 -26.71 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 8 H 0.05 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.29 5.41 -26.73 -0.14 -2.44 16 11 C 0.06 1.09 5.69 -3.82 -0.02 1.07 16 12 N -0.68 -10.92 6.49 -115.05 -0.75 -11.67 16 13 C 0.12 1.73 6.12 -4.97 -0.03 1.70 16 14 C 0.33 4.52 7.15 -157.20 -1.12 3.39 16 15 N -0.52 -6.56 10.33 -10.72 -0.11 -6.67 16 16 C 0.15 1.35 11.30 -17.20 -0.19 1.15 16 17 C -0.24 -1.81 10.17 -39.32 -0.40 -2.21 16 18 C 0.15 1.39 11.30 -17.20 -0.19 1.20 16 19 N -0.50 -6.62 10.33 -10.73 -0.11 -6.73 16 20 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 21 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 24 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.34 5.34 8.72 -39.29 -0.34 5.00 16 28 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 31 H 0.15 0.59 8.06 -52.48 -0.42 0.17 16 32 H 0.17 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 282.08 15.07 4.25 4.25 Total: -1.00 -32.96 282.08 -8.20 -41.15 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -4.53 Total: -1.13 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -2.66 Total: -9.56 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: -0.23 Total: -51.77 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.96 -8.20 -41.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705220416.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.173 kcal (2) G-P(sol) polarization free energy of solvation -32.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds