Wall clock time and date at job start Mon Mar 30 2020 03:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99705 * 2 1 4 4 H 1.48497 * 109.46424 * 269.99741 * 3 2 1 5 5 H 1.48498 * 109.46986 * 29.99618 * 3 2 1 6 6 H 1.48503 * 109.47043 * 150.00096 * 3 2 1 7 7 C 1.37878 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46820 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46700 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46916 * 179.97438 * 11 10 9 13 13 C 1.46905 * 110.99870 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47066 * 180.02562 * 13 12 11 15 15 N 1.31792 * 119.12473 * 269.72942 * 14 13 12 16 16 C 1.32332 * 120.81996 * 179.75979 * 15 14 13 17 17 C 1.38599 * 119.10249 * 0.50498 * 16 15 14 18 18 C 1.38596 * 118.40026 * 359.75059 * 17 16 15 19 19 N 1.31797 * 119.12255 * 89.99984 * 14 13 12 20 20 H 0.97002 * 120.00555 * 359.97438 * 1 2 3 21 21 H 1.08993 * 109.47135 * 59.98994 * 9 7 2 22 22 H 1.09005 * 109.46741 * 299.99708 * 9 7 2 23 23 H 1.08995 * 109.47485 * 60.00257 * 10 9 7 24 24 H 1.08996 * 109.47010 * 299.99049 * 10 9 7 25 25 H 1.09004 * 109.46889 * 60.00145 * 11 10 9 26 26 H 1.08995 * 109.47384 * 299.99786 * 11 10 9 27 27 H 1.00901 * 111.00067 * 303.95263 * 12 11 10 28 28 H 1.09001 * 109.46798 * 300.00327 * 13 12 11 29 29 H 1.08998 * 109.46961 * 60.00043 * 13 12 11 30 30 H 1.08004 * 120.44869 * 180.23510 * 16 15 14 31 31 H 1.08005 * 120.80099 * 179.76584 * 17 16 15 32 32 H 1.08003 * 120.44925 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9870 0.0012 12 7 2.4351 -6.1036 0.0006 13 6 1.7349 -7.3950 0.0005 14 6 2.7444 -8.5138 0.0005 15 7 3.1701 -8.9937 -1.1507 16 6 4.0596 -9.9727 -1.1899 17 6 4.5350 -10.4996 0.0006 18 6 4.0599 -9.9724 1.1911 19 7 3.1741 -8.9900 1.1519 20 1 -0.4851 0.8400 0.0004 21 1 0.6247 -2.5571 -0.8895 22 1 0.6242 -2.5567 0.8904 23 1 2.8721 -3.6043 0.8905 24 1 2.8720 -3.6043 -0.8895 25 1 0.8535 -5.0450 -0.8886 26 1 0.8542 -5.0446 0.8914 27 1 3.0694 -6.0365 -0.7813 28 1 1.1103 -7.4695 0.8907 29 1 1.1097 -7.4692 -0.8892 30 1 4.4071 -10.3588 -2.1368 31 1 5.2584 -11.3015 0.0006 32 1 4.4082 -10.3578 2.1380 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705220416.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:48 Heat of formation + Delta-G solvation = 11.624838 kcal Electronic energy + Delta-G solvation = -13789.514918 eV Core-core repulsion = 11362.676989 eV Total energy + Delta-G solvation = -2426.837929 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.94358 -37.88772 -35.62056 -34.66964 -33.87558 -32.32058 -28.94755 -26.74919 -25.45490 -24.20480 -23.18356 -21.92665 -18.59303 -18.47554 -17.93319 -16.81056 -16.60820 -16.28972 -16.10496 -15.37401 -14.94906 -14.67341 -14.32882 -14.29488 -13.54396 -13.31970 -13.15569 -12.67081 -12.47458 -12.27684 -11.85095 -11.78970 -11.54881 -11.40053 -11.13627 -10.54576 -10.51131 -10.20024 -9.48806 -8.19500 -6.30533 -0.09423 0.19370 1.40399 1.42172 1.53551 2.41518 2.63923 2.91940 3.13469 3.25690 3.44456 3.78703 4.08239 4.22533 4.24029 4.28099 4.42409 4.48784 4.66395 4.71480 4.93097 4.96243 5.07663 5.23351 5.46408 5.51694 5.74977 5.85920 5.90079 6.09472 6.26460 6.29822 6.86029 7.14562 7.38495 8.92485 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.069615 B = 0.003874 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.115342 B = 7226.174041 C = 7328.374752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.025 3.975 10 C -0.092 4.092 11 C 0.074 3.926 12 N -0.684 5.684 13 C 0.127 3.873 14 C 0.306 3.694 15 N -0.541 5.541 16 C 0.133 3.867 17 C -0.213 4.213 18 C 0.132 3.868 19 N -0.532 5.532 20 H 0.264 0.736 21 H -0.006 1.006 22 H -0.006 1.006 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.031 0.969 26 H 0.069 0.931 27 H 0.342 0.658 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.200 0.800 31 H 0.190 0.810 32 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.010 -22.443 -0.971 24.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.130 4.130 11 C -0.054 4.054 12 N -0.316 5.316 13 C -0.003 4.003 14 C 0.037 3.963 15 N -0.256 5.256 16 C -0.032 4.032 17 C -0.235 4.235 18 C -0.033 4.033 19 N -0.247 5.247 20 H 0.073 0.927 21 H 0.012 0.988 22 H 0.012 0.988 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.087 0.913 27 H 0.160 0.840 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.217 0.783 31 H 0.207 0.793 32 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 8.266 -21.604 -0.278 23.133 hybrid contribution 0.330 0.300 -0.880 0.987 sum 8.596 -21.304 -1.158 23.002 Atomic orbital electron populations 1.70095 1.07777 1.27802 1.51693 1.25999 0.95814 1.03403 0.94698 0.85426 0.78628 0.78332 0.78532 1.19669 1.20602 1.18847 1.21699 0.93520 0.92465 1.50562 0.92356 1.18969 0.94385 0.92889 0.94998 1.21371 0.98108 0.92890 1.00653 1.21874 0.93739 0.89442 1.00388 1.60450 1.20214 1.00702 1.50197 1.20576 0.92184 0.84877 1.02688 1.22935 0.94546 0.94726 0.84053 1.68249 1.13706 1.13224 1.30450 1.23922 0.89099 0.89127 1.01023 1.23354 1.02996 1.03493 0.93640 1.23950 0.89269 0.89048 1.01059 1.68250 1.13315 1.12490 1.30656 0.92727 0.98802 0.98768 0.93045 0.93194 0.95048 0.91262 0.84048 0.88691 0.92180 0.78312 0.79312 0.78517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.95 13.29 21.45 0.28 -57.67 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.54 -32.07 9.11 25.60 0.23 -31.83 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.38 4.97 29.85 0.15 1.53 16 10 C -0.09 -4.01 5.41 30.59 0.17 -3.84 16 11 C 0.07 2.69 5.69 86.30 0.49 3.18 16 12 N -0.68 -21.96 6.49 -517.92 -3.36 -25.32 16 13 C 0.13 3.59 6.12 85.55 0.52 4.11 16 14 C 0.31 8.27 7.15 138.75 0.99 9.26 16 15 N -0.54 -13.16 10.33 -187.84 -1.94 -15.10 16 16 C 0.13 2.10 11.30 84.70 0.96 3.06 16 17 C -0.21 -2.52 10.17 22.44 0.23 -2.29 16 18 C 0.13 2.19 11.30 84.70 0.96 3.15 16 19 N -0.53 -13.68 10.33 -187.85 -1.94 -15.62 16 20 H 0.26 15.33 8.31 -92.71 -0.77 14.55 16 21 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 22 H -0.01 -0.36 8.14 -2.38 -0.02 -0.37 16 23 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 24 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.03 1.11 8.14 -2.39 -0.02 1.10 16 26 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.34 10.71 8.72 -89.69 -0.78 9.93 16 28 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.20 1.59 8.06 -2.91 -0.02 1.57 16 31 H 0.19 0.54 8.06 -2.91 -0.02 0.52 16 32 H 0.20 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -71.98 282.08 0.55 -71.43 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 0.32 Total: 8.30 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: 5.16 Total: -13.31 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -6.96 Total: -113.70 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -71.98 0.55 -71.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705220416.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.059 kcal (2) G-P(sol) polarization free energy of solvation -71.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds