Wall clock time and date at job start Mon Mar 30 2020 03:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48493 * 109.47285 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47233 * 300.00136 * 3 2 1 6 6 H 1.48500 * 109.46790 * 60.00064 * 3 2 1 7 7 C 1.37875 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99989 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47109 * 180.02562 * 9 7 2 11 11 C 1.46895 * 110.99789 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.47030 * 179.97438 * 11 10 9 13 13 N 1.30502 * 125.64642 * 90.02293 * 12 11 10 14 14 C 1.34130 * 109.25152 * 180.02562 * 13 12 11 15 15 C 1.34666 * 108.02415 * 359.97438 * 14 13 12 16 16 N 1.35039 * 125.64987 * 269.72120 * 12 11 10 17 17 C 1.46499 * 126.40108 * 359.97438 * 16 12 11 18 18 C 1.52995 * 117.50283 * 188.62287 * 17 16 12 19 19 C 1.53000 * 60.00262 * 252.50984 * 18 17 16 20 20 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 21 21 H 1.08992 * 109.46894 * 60.00097 * 9 7 2 22 22 H 1.09004 * 109.47113 * 300.00248 * 9 7 2 23 23 H 1.00899 * 110.99484 * 303.95639 * 10 9 7 24 24 H 1.08996 * 109.47424 * 299.99656 * 11 10 9 25 25 H 1.09002 * 109.47411 * 60.00282 * 11 10 9 26 26 H 1.08006 * 125.98693 * 180.02562 * 14 13 12 27 27 H 1.08004 * 126.59500 * 180.02562 * 15 14 13 28 28 H 1.09006 * 115.54875 * 334.33612 * 17 16 12 29 29 H 1.08999 * 117.49996 * 359.97438 * 18 17 16 30 30 H 1.08997 * 117.50306 * 145.02278 * 18 17 16 31 31 H 1.08995 * 117.49928 * 252.51251 * 19 18 17 32 32 H 1.09001 * 117.49552 * 107.48631 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 1.5053 -4.9070 0.0001 12 6 2.5148 -6.0260 -0.0006 13 7 3.0247 -6.5909 1.0596 14 6 3.8869 -7.5458 0.6804 15 6 3.9118 -7.5742 -0.6657 16 7 3.0372 -6.6140 -1.0982 17 6 2.7284 -6.2838 -2.4917 18 6 3.2819 -7.2098 -3.5766 19 6 3.8834 -5.8168 -3.3798 20 1 -0.4849 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8902 22 1 0.6246 -2.5571 0.8897 23 1 2.8405 -3.5486 -0.7819 24 1 0.8808 -4.9812 0.8903 25 1 0.8801 -4.9818 -0.8897 26 1 4.4601 -8.1814 1.3393 27 1 4.5044 -8.2312 -1.2850 28 1 1.7492 -5.8364 -2.6629 29 1 3.8762 -8.0645 -3.2536 30 1 2.6669 -7.3719 -4.4618 31 1 3.6641 -5.0626 -4.1355 32 1 4.8732 -5.7554 -2.9273 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711774854.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:44 Heat of formation + Delta-G solvation = 90.228717 kcal Electronic energy + Delta-G solvation = -14514.256806 eV Core-core repulsion = 12090.827396 eV Total energy + Delta-G solvation = -2423.429409 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.93261 -37.36574 -35.39115 -32.55433 -31.66193 -29.88062 -26.95821 -24.34956 -23.28891 -22.78817 -21.47099 -20.75216 -19.34056 -17.50341 -16.32897 -15.59944 -14.94863 -14.78123 -14.55629 -14.24411 -13.60850 -13.20741 -12.90722 -12.75299 -12.10429 -11.87949 -11.50598 -11.35464 -11.22122 -10.97660 -10.73857 -10.68762 -9.99928 -9.64106 -9.23338 -9.19570 -8.50474 -8.17592 -7.35647 -6.04882 -4.06646 2.13381 2.75855 3.30779 3.38003 3.39353 3.44021 3.50890 4.28240 4.42623 4.52094 4.57441 4.75925 4.88311 5.24995 5.31364 5.41804 5.43984 5.56193 5.58457 5.69204 5.75156 5.97435 6.19482 6.48530 6.95696 7.16080 7.34623 7.38085 7.75817 8.08273 8.31828 8.41003 8.54278 9.02227 9.58298 11.06305 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034801 B = 0.006164 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.374015 B = 4541.194964 C = 4896.349912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.195 3.805 10 N -0.678 5.678 11 C 0.142 3.858 12 C 0.234 3.766 13 N -0.479 5.479 14 C -0.028 4.028 15 C -0.072 4.072 16 N -0.429 5.429 17 C 0.055 3.945 18 C -0.174 4.174 19 C -0.174 4.174 20 H 0.261 0.739 21 H -0.012 1.012 22 H 0.033 0.967 23 H 0.328 0.672 24 H 0.096 0.904 25 H 0.032 0.968 26 H 0.167 0.833 27 H 0.167 0.833 28 H 0.142 0.858 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.716 -14.407 -7.895 17.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.309 5.309 11 C 0.011 3.989 12 C -0.029 4.029 13 N -0.197 5.197 14 C -0.177 4.177 15 C -0.204 4.204 16 N -0.111 5.111 17 C -0.050 4.050 18 C -0.212 4.212 19 C -0.212 4.212 20 H 0.071 0.929 21 H 0.006 0.994 22 H 0.051 0.949 23 H 0.144 0.856 24 H 0.114 0.886 25 H 0.050 0.950 26 H 0.184 0.816 27 H 0.184 0.816 28 H 0.160 0.840 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.410 -14.039 -6.510 16.393 hybrid contribution 0.372 0.572 -1.768 1.895 sum 5.782 -13.467 -8.277 16.832 Atomic orbital electron populations 1.69970 1.06067 1.26746 1.50955 1.24980 0.94887 0.99375 0.95293 0.86415 0.80078 0.83249 0.77522 1.19656 1.21106 1.20907 1.21192 0.93592 0.90064 1.50291 0.91881 1.19610 0.90470 0.87033 0.96056 1.60644 1.21103 1.00177 1.49011 1.20248 0.90982 0.86067 1.01580 1.23488 1.00373 0.98541 0.80454 1.70321 1.11720 1.09596 1.28070 1.22258 1.02124 1.00768 0.92512 1.22445 1.01776 0.99441 0.96774 1.44852 1.32702 1.27800 1.05737 1.21999 0.99792 1.05718 0.77504 1.23363 1.03718 0.94715 0.99367 1.23471 0.98157 0.97606 1.01975 0.92920 0.99437 0.94927 0.85603 0.88552 0.95004 0.81621 0.81583 0.84025 0.87987 0.87185 0.86973 0.87840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.51 -14.63 9.32 -34.44 -0.32 -14.95 16 8 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 9 C 0.19 5.10 5.44 -4.97 -0.03 5.07 16 10 N -0.68 -15.10 6.48 -116.34 -0.75 -15.86 16 11 C 0.14 2.69 5.99 -4.98 -0.03 2.66 16 12 C 0.23 4.19 7.41 -155.42 -1.15 3.04 16 13 N -0.48 -9.12 11.25 -10.81 -0.12 -9.24 16 14 C -0.03 -0.43 11.87 -17.81 -0.21 -0.64 16 15 C -0.07 -0.96 10.87 -16.56 -0.18 -1.14 16 16 N -0.43 -6.23 3.08 -106.83 -0.33 -6.56 16 17 C 0.05 0.63 6.57 -67.93 -0.45 0.18 16 18 C -0.17 -1.43 9.99 -26.73 -0.27 -1.70 16 19 C -0.17 -1.69 10.40 -26.73 -0.28 -1.97 16 20 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 21 H -0.01 -0.33 8.14 -51.93 -0.42 -0.75 16 22 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.33 6.99 8.72 -39.29 -0.34 6.65 16 24 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 25 H 0.03 0.55 7.23 -51.93 -0.38 0.17 16 26 H 0.17 2.02 8.06 -52.48 -0.42 1.59 16 27 H 0.17 1.59 7.13 -52.48 -0.37 1.22 16 28 H 0.14 1.59 7.31 -51.93 -0.38 1.21 16 29 H 0.10 0.77 6.90 -51.93 -0.36 0.42 16 30 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 278.59 15.07 4.20 4.20 Total: -1.00 -32.54 278.59 -8.64 -41.17 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -4.33 Total: 3.47 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -3.01 Total: -7.93 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -0.47 Total: -57.66 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.54 -8.64 -41.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711774854.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.403 kcal (2) G-P(sol) polarization free energy of solvation -32.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds