Wall clock time and date at job start Mon Mar 30 2020 02:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46976 * 2 1 4 4 O 1.42904 * 109.47054 * 119.99046 * 2 1 3 5 5 C 1.52993 * 109.47676 * 239.99365 * 2 1 3 6 6 H 1.09001 * 109.46934 * 300.00324 * 5 2 1 7 7 N 1.46908 * 109.47030 * 59.99845 * 5 2 1 8 8 C 1.50704 * 109.47513 * 179.97438 * 5 2 1 9 9 C 1.38633 * 119.74991 * 279.72928 * 8 5 2 10 10 C 1.37612 * 120.25034 * 179.71945 * 9 8 5 11 11 C 1.40714 * 119.74306 * 0.52968 * 10 9 8 12 12 C 1.41395 * 120.24617 * 179.72799 * 11 10 9 13 13 H 1.08007 * 120.00106 * 155.31069 * 12 11 10 14 14 C 1.39944 * 119.99763 * 335.30415 * 12 11 10 15 15 N 1.30821 * 120.00365 * 342.23664 * 14 12 11 16 16 Si 1.86803 * 119.99829 * 162.23594 * 14 12 11 17 17 H 1.48494 * 109.47305 * 94.66359 * 16 14 12 18 18 H 1.48501 * 109.47105 * 214.66916 * 16 14 12 19 19 H 1.48501 * 109.47387 * 334.66470 * 16 14 12 20 20 C 1.40722 * 119.51335 * 359.74214 * 11 10 9 21 21 C 1.37622 * 119.73802 * 0.02562 * 20 11 10 22 22 H 1.09001 * 109.47203 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47657 * 300.00398 * 1 2 3 24 24 H 1.08999 * 109.47105 * 60.00830 * 1 2 3 25 25 H 0.96701 * 113.99973 * 300.00348 * 4 2 1 26 26 H 1.00896 * 110.99495 * 60.00352 * 7 5 2 27 27 H 1.00895 * 111.00229 * 183.95439 * 7 5 2 28 28 H 1.08007 * 119.87637 * 359.97438 * 9 8 5 29 29 H 1.08005 * 120.13311 * 180.27815 * 10 9 8 30 30 H 0.96999 * 120.00110 * 179.97438 * 15 14 12 31 31 H 1.07996 * 120.13071 * 179.97438 * 20 11 10 32 32 H 1.08007 * 119.86707 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.0400 -0.7213 -1.2491 6 1 1.6767 -1.7490 -1.2490 7 7 1.5504 -0.0290 -2.4487 8 6 3.5471 -0.7208 -1.2493 9 6 4.2345 0.4085 -1.6668 10 6 5.6106 0.4223 -1.6657 11 6 6.3198 -0.7195 -1.2494 12 6 7.7338 -0.7189 -1.2496 13 1 8.2742 -1.3833 -0.5915 14 6 8.4330 0.1424 -2.1026 15 7 7.8254 0.6846 -3.1264 16 14 10.2341 0.5178 -1.7793 17 1 11.0828 -0.4012 -2.5794 18 1 10.5242 1.9221 -2.1657 19 1 10.5273 0.3313 -0.3355 20 6 5.6116 -1.8620 -0.8332 21 6 4.2354 -1.8515 -0.8379 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 1.7209 -0.2698 1.9980 26 1 1.8739 0.9264 -2.4720 27 1 1.8199 -0.5225 -3.2864 28 1 3.6880 1.2821 -1.9901 29 1 6.1442 1.3046 -1.9871 30 1 8.3100 1.2819 -3.7174 31 1 6.1459 -2.7439 -0.5121 32 1 3.6898 -2.7274 -0.5193 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713811796.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:21 Heat of formation + Delta-G solvation = -44.239623 kcal Electronic energy + Delta-G solvation = -14818.033321 eV Core-core repulsion = 12356.480176 eV Total energy + Delta-G solvation = -2461.553145 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.44116 -36.72614 -34.49176 -33.11314 -29.89433 -29.35906 -29.17833 -26.06916 -23.78072 -21.26675 -20.84422 -19.32831 -17.29957 -17.00021 -15.61862 -15.34199 -14.89043 -14.05338 -13.62908 -13.60431 -13.14962 -12.75820 -12.30118 -12.08980 -11.85328 -11.73403 -11.55041 -11.13863 -10.99378 -10.82923 -10.53684 -10.20632 -9.75178 -9.58509 -9.37852 -9.09289 -8.28131 -7.43527 -7.25303 -6.76073 -4.33552 2.75913 3.06160 3.08643 3.11463 3.21024 3.93240 4.45410 4.59452 5.25224 5.36449 5.46776 5.63097 5.78519 5.93228 6.11216 6.21488 6.27436 6.31323 6.42415 6.54841 6.94093 7.07568 7.27053 7.35892 7.51832 7.63626 7.79317 7.88541 8.05441 8.07656 8.15764 8.32126 8.64731 8.90894 8.99151 10.18812 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.052651 B = 0.006744 C = 0.006450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.672712 B = 4150.784731 C = 4339.902469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.114 3.886 3 H 0.046 0.954 4 O -0.557 6.557 5 C 0.157 3.843 6 H 0.074 0.926 7 N -0.840 5.840 8 C -0.237 4.237 9 C -0.102 4.102 10 C -0.163 4.163 11 C 0.111 3.889 12 C -0.464 4.464 13 H 0.077 0.923 14 C 0.076 3.924 15 N -0.796 5.796 16 Si 0.906 3.094 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.261 1.261 20 C -0.227 4.227 21 C -0.068 4.068 22 H 0.055 0.945 23 H 0.043 0.957 24 H 0.074 0.926 25 H 0.368 0.632 26 H 0.335 0.665 27 H 0.345 0.655 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.279 0.721 31 H 0.090 0.910 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.608 1.453 2.788 8.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.055 3.945 3 H 0.064 0.936 4 O -0.360 6.360 5 C 0.046 3.954 6 H 0.092 0.908 7 N -0.369 5.369 8 C -0.239 4.239 9 C -0.120 4.120 10 C -0.183 4.183 11 C 0.108 3.892 12 C -0.494 4.494 13 H 0.095 0.905 14 C -0.141 4.141 15 N -0.421 5.421 16 Si 0.731 3.269 17 H -0.196 1.196 18 H -0.201 1.201 19 H -0.184 1.184 20 C -0.247 4.247 21 C -0.087 4.087 22 H 0.075 0.925 23 H 0.063 0.937 24 H 0.093 0.907 25 H 0.213 0.787 26 H 0.148 0.852 27 H 0.157 0.843 28 H 0.099 0.901 29 H 0.134 0.866 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.034 1.073 2.422 8.460 hybrid contribution 1.648 0.700 0.207 1.802 sum -6.387 1.773 2.629 7.131 Atomic orbital electron populations 1.22429 0.96892 1.02171 1.01753 1.21656 0.91746 0.94920 0.86208 0.93567 1.86593 1.77138 1.56988 1.15264 1.19864 0.90704 0.96881 0.87997 0.90804 1.59065 1.66293 1.06789 1.04731 1.19657 0.93929 0.96599 1.13744 1.20374 0.94741 0.95764 1.01162 1.21241 0.92185 0.99005 1.05840 1.17620 0.93227 0.90036 0.88299 1.19589 0.91544 1.18826 1.19407 0.90532 1.25900 1.00799 0.93999 0.93405 1.69827 1.38583 1.23764 1.09968 0.86336 0.82134 0.78377 0.80089 1.19587 1.20063 1.18440 1.20988 0.93298 0.97991 1.12386 1.20314 0.93955 0.96069 0.98346 0.92541 0.93747 0.90675 0.78676 0.85187 0.84286 0.90062 0.86642 0.90981 0.89190 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 9.38 37.15 0.35 -1.93 16 2 C 0.11 1.82 3.30 -26.74 -0.09 1.73 16 3 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 4 O -0.56 -9.27 12.94 -35.23 -0.46 -9.73 16 5 C 0.16 2.80 2.78 -68.86 -0.19 2.61 16 6 H 0.07 1.36 7.99 -51.93 -0.42 0.95 16 7 N -0.84 -12.98 8.29 -5.65 -0.05 -13.03 16 8 C -0.24 -5.16 4.62 -104.33 -0.48 -5.64 16 9 C -0.10 -2.34 9.26 -39.66 -0.37 -2.71 16 10 C -0.16 -4.28 8.70 -38.88 -0.34 -4.62 16 11 C 0.11 3.02 5.57 -106.82 -0.60 2.42 16 12 C -0.46 -12.57 9.05 -37.74 -0.34 -12.91 16 13 H 0.08 2.00 7.91 -52.48 -0.41 1.59 16 14 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 15 N -0.80 -20.76 10.97 55.55 0.61 -20.15 16 16 Si 0.91 18.85 29.59 -169.99 -5.03 13.82 16 17 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 18 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 19 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 20 C -0.23 -5.79 9.80 -38.87 -0.38 -6.17 16 21 C -0.07 -1.59 9.64 -39.66 -0.38 -1.97 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.97 7.60 -51.93 -0.39 0.58 16 25 H 0.37 4.34 9.08 45.56 0.41 4.75 16 26 H 0.34 5.07 7.31 -39.29 -0.29 4.79 16 27 H 0.34 5.25 9.06 -39.29 -0.36 4.90 16 28 H 0.08 1.66 6.63 -52.48 -0.35 1.31 16 29 H 0.12 3.12 6.18 -52.48 -0.32 2.80 16 30 H 0.28 6.61 8.30 -40.82 -0.34 6.28 16 31 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 32 H 0.09 1.85 8.03 -52.48 -0.42 1.43 16 LS Contribution 270.91 15.07 4.08 4.08 Total: -1.00 -28.67 270.91 -7.12 -35.80 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -3.37 Total: 16.54 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: -2.91 Total: -27.34 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.56 Total: -33.17 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -0.46 Total: -9.73 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.67 -7.12 -35.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713811796.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.443 kcal (2) G-P(sol) polarization free energy of solvation -28.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds