Wall clock time and date at job start Mon Mar 30 2020 02:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.37093 * 119.99823 * 2 1 4 4 H 1.08005 * 119.99765 * 155.94098 * 3 2 1 5 5 C 1.38953 * 120.00331 * 335.94461 * 3 2 1 6 6 N 1.31415 * 119.99557 * 348.40317 * 5 3 2 7 7 Si 1.86799 * 120.00179 * 168.13605 * 5 3 2 8 8 H 1.48505 * 109.46846 * 359.97438 * 7 5 3 9 9 H 1.48492 * 109.47304 * 119.99842 * 7 5 3 10 10 H 1.48501 * 109.46741 * 239.99589 * 7 5 3 11 11 C 1.34777 * 119.99902 * 180.02562 * 2 1 3 12 12 O 1.21287 * 119.99933 * 180.02562 * 11 2 1 13 13 C 1.50698 * 119.99962 * 359.97438 * 11 2 1 14 14 C 1.52992 * 117.50462 * 248.61905 * 13 11 2 15 15 C 1.52990 * 138.58660 * 121.61213 * 14 13 11 16 16 C 1.52999 * 138.58058 * 23.41000 * 14 13 11 17 17 C 1.52985 * 60.00219 * 252.51512 * 14 13 11 18 18 C 1.52996 * 138.59018 * 130.89223 * 17 14 13 19 19 C 1.52998 * 138.58851 * 229.10698 * 17 14 13 20 20 H 1.09003 * 109.46474 * 92.91338 * 1 2 3 21 21 H 1.08997 * 109.46812 * 212.91387 * 1 2 3 22 22 H 1.09000 * 109.46949 * 332.91435 * 1 2 3 23 23 H 0.97001 * 119.99523 * 180.02562 * 6 5 3 24 24 H 1.09002 * 115.55058 * 34.33867 * 13 11 2 25 25 H 1.08999 * 117.50365 * 336.60653 * 15 14 13 26 26 H 1.08996 * 117.50248 * 121.63233 * 15 14 13 27 27 H 1.09001 * 117.50083 * 238.37952 * 16 14 13 28 28 H 1.09004 * 117.49947 * 23.38162 * 16 14 13 29 29 H 1.09002 * 117.49328 * 238.38325 * 18 17 14 30 30 H 1.08996 * 117.50094 * 23.40129 * 18 17 14 31 31 H 1.08999 * 117.50320 * 336.59380 * 19 17 14 32 32 H 1.09004 * 117.49700 * 121.59427 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1602 1.2279 0.3813 5 6 1.5463 2.3384 -0.4905 6 7 0.4178 2.2544 -1.1586 7 14 2.3343 4.0059 -0.1938 8 1 3.5868 3.8300 0.5844 9 1 2.6465 4.6448 -1.4974 10 1 1.3956 4.8684 0.5679 11 6 2.1390 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0001 13 6 1.3854 -2.4723 -0.0005 14 6 1.4611 -3.3318 1.2629 15 6 0.5102 -3.9380 2.2968 16 6 1.7411 -3.1540 2.7565 17 6 2.2075 -3.7626 -0.0011 18 6 3.6072 -4.2312 -0.4037 19 6 2.3763 -5.0152 -0.8633 20 1 -0.3632 -0.0522 -1.0264 21 1 -0.3633 -0.8627 0.5584 22 1 -0.3633 0.9150 0.4679 23 1 -0.0038 3.0580 -1.5013 24 1 0.4469 -2.4733 -0.5549 25 1 -0.4637 -3.4651 2.4232 26 1 0.5272 -5.0205 2.4226 27 1 2.5679 -3.7208 3.1845 28 1 1.5772 -2.1652 3.1850 29 1 4.1384 -3.6439 -1.1527 30 1 4.2297 -4.6800 0.3703 31 1 2.1890 -5.9799 -0.3917 32 1 2.0975 -4.9438 -1.9147 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720258144.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:01 Heat of formation + Delta-G solvation = 50.873024 kcal Electronic energy + Delta-G solvation = -15023.312458 eV Core-core repulsion = 12565.883707 eV Total energy + Delta-G solvation = -2457.428751 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.81721 -38.86527 -36.60627 -35.96735 -33.67722 -31.59097 -28.28685 -26.57971 -23.63284 -23.25329 -22.98012 -19.79303 -19.28021 -18.89520 -17.81997 -16.61541 -16.35146 -16.23148 -15.94725 -15.54997 -15.28839 -14.42218 -13.71712 -13.37507 -13.15106 -12.98781 -12.70006 -12.45117 -12.41824 -12.34776 -12.23489 -12.12934 -11.73632 -11.05044 -10.85466 -10.70164 -10.42362 -10.20368 -9.69155 -8.36443 -6.01947 1.32740 1.37918 1.52480 1.82112 2.20604 2.42377 2.67156 2.99498 3.10931 3.26635 3.39546 3.54466 3.94222 4.23752 4.29547 4.47974 4.56289 4.62208 4.72315 4.73784 4.75235 4.80860 4.84103 4.97187 4.98435 5.08415 5.25003 5.28314 5.31377 5.41146 6.08326 6.47680 7.14785 7.44520 8.03696 8.66977 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038927 B = 0.007898 C = 0.007512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.115177 B = 3544.253962 C = 3726.533672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.127 3.873 2 N -0.463 5.463 3 C -0.344 4.344 4 H 0.068 0.932 5 C -0.004 4.004 6 N -0.898 5.898 7 Si 0.992 3.008 8 H -0.275 1.275 9 H -0.274 1.274 10 H -0.262 1.262 11 C 0.466 3.534 12 O -0.625 6.625 13 C -0.090 4.090 14 C -0.173 4.173 15 C -0.092 4.092 16 C -0.144 4.144 17 C -0.172 4.172 18 C -0.133 4.133 19 C -0.096 4.096 20 H 0.041 0.959 21 H 0.060 0.940 22 H 0.058 0.942 23 H 0.274 0.726 24 H 0.124 0.876 25 H 0.112 0.888 26 H 0.126 0.874 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.127 0.873 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.524 -11.450 4.205 12.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 N -0.181 5.181 3 C -0.472 4.472 4 H 0.086 0.914 5 C -0.206 4.206 6 N -0.536 5.536 7 Si 0.815 3.185 8 H -0.199 1.199 9 H -0.199 1.199 10 H -0.187 1.187 11 C 0.256 3.744 12 O -0.512 6.512 13 C -0.111 4.111 14 C -0.174 4.174 15 C -0.128 4.128 16 C -0.181 4.181 17 C -0.173 4.173 18 C -0.170 4.170 19 C -0.133 4.133 20 H 0.060 0.940 21 H 0.079 0.921 22 H 0.077 0.923 23 H 0.084 0.916 24 H 0.141 0.859 25 H 0.130 0.870 26 H 0.144 0.856 27 H 0.124 0.876 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.122 0.878 31 H 0.145 0.855 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.113 -11.276 4.114 12.400 hybrid contribution 0.459 1.424 -0.223 1.512 sum -2.654 -9.852 3.891 10.920 Atomic orbital electron populations 1.21366 0.79494 1.00311 1.00414 1.43793 1.06705 1.04493 1.63138 1.19633 1.00121 0.86100 1.41337 0.91401 1.26136 0.97069 1.02997 0.94352 1.70075 1.18883 1.30700 1.33974 0.84913 0.78297 0.77024 0.78302 1.19950 1.19930 1.18717 1.20150 0.87389 0.85160 0.81715 1.90437 1.15914 1.87884 1.57012 1.21609 0.99903 0.88145 1.01451 1.21147 1.06749 1.03003 0.86493 1.22928 0.94022 1.00697 0.95156 1.22777 1.01148 1.01793 0.92382 1.21054 1.01275 0.96373 0.98590 1.22590 0.89910 1.01875 1.02606 1.22917 0.98238 0.93150 0.98980 0.93998 0.92144 0.92314 0.91621 0.85867 0.87016 0.85642 0.87608 0.89930 0.90648 0.87817 0.85482 0.87662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.97 8.19 127.77 1.05 7.02 16 2 N -0.46 -25.57 3.01 -658.87 -1.99 -27.56 16 3 C -0.34 -20.58 9.25 84.04 0.78 -19.80 16 4 H 0.07 4.35 7.44 -2.91 -0.02 4.33 16 5 C 0.00 -0.22 5.08 84.93 0.43 0.21 16 6 N -0.90 -49.09 10.75 21.66 0.23 -48.86 16 7 Si 0.99 43.79 29.57 68.60 2.03 45.82 16 8 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 9 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 10 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 11 C 0.47 24.89 7.41 87.66 0.65 25.54 16 12 O -0.63 -38.01 15.95 -3.05 -0.05 -38.06 16 13 C -0.09 -3.70 4.81 -11.55 -0.06 -3.75 16 14 C -0.17 -5.85 5.38 -52.19 -0.28 -6.13 16 15 C -0.09 -2.15 10.53 30.59 0.32 -1.83 16 16 C -0.14 -4.33 10.53 30.59 0.32 -4.00 16 17 C -0.17 -6.07 5.05 -52.19 -0.26 -6.34 16 18 C -0.13 -4.37 10.16 30.59 0.31 -4.06 16 19 C -0.10 -2.46 10.53 30.59 0.32 -2.14 16 20 H 0.04 2.00 7.78 -2.39 -0.02 1.99 16 21 H 0.06 2.35 6.81 -2.39 -0.02 2.34 16 22 H 0.06 2.88 6.83 -2.39 -0.02 2.87 16 23 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 24 H 0.12 4.61 7.32 -2.39 -0.02 4.60 16 25 H 0.11 2.32 8.14 -2.39 -0.02 2.31 16 26 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 28 H 0.08 2.70 8.14 -2.38 -0.02 2.68 16 29 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 30 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 31 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -71.65 277.14 4.91 -66.74 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 1.10 Total: 17.19 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 3.58 Total: -15.27 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -1.75 Total: -76.42 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -0.05 Total: -38.06 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -71.65 4.91 -66.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720258144.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.613 kcal (2) G-P(sol) polarization free energy of solvation -71.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds