Wall clock time and date at job start Mon Mar 30 2020 03:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38607 * 120.08052 * 2 1 4 4 C 1.38883 * 117.97188 * 179.75185 * 3 2 1 5 5 C 1.50698 * 121.01525 * 180.27079 * 4 3 2 6 6 N 1.46504 * 109.46725 * 260.26330 * 5 4 3 7 7 C 1.46499 * 119.99703 * 269.99739 * 6 5 4 8 8 C 1.36932 * 119.99972 * 90.00279 * 6 5 4 9 9 H 1.07999 * 120.00327 * 23.42184 * 8 6 5 10 10 C 1.38815 * 119.99892 * 203.42016 * 8 6 5 11 11 N 1.31616 * 120.00048 * 11.40884 * 10 8 6 12 12 Si 1.86800 * 120.00061 * 191.41388 * 10 8 6 13 13 H 1.48500 * 109.47359 * 89.99637 * 12 10 8 14 14 H 1.48499 * 109.47145 * 209.99961 * 12 10 8 15 15 H 1.48504 * 109.47180 * 329.99695 * 12 10 8 16 16 C 1.38601 * 117.96829 * 0.52326 * 4 3 2 17 17 C 1.50702 * 120.07913 * 179.74048 * 16 4 3 18 18 N 1.31937 * 119.84662 * 359.46575 * 16 4 3 19 19 N 1.28351 * 122.18389 * 0.27858 * 18 16 4 20 20 H 1.08996 * 109.46990 * 269.97792 * 1 2 3 21 21 H 1.08998 * 109.46905 * 29.97752 * 1 2 3 22 22 H 1.09001 * 109.47281 * 149.97779 * 1 2 3 23 23 H 1.08012 * 121.01123 * 0.04648 * 3 2 1 24 24 H 1.09000 * 109.47684 * 20.26192 * 5 4 3 25 25 H 1.08999 * 109.47267 * 140.26160 * 5 4 3 26 26 H 1.09000 * 109.46879 * 94.30685 * 7 6 5 27 27 H 1.09003 * 109.46889 * 214.30436 * 7 6 5 28 28 H 1.09000 * 109.47248 * 334.30702 * 7 6 5 29 29 H 0.97004 * 120.00299 * 180.02562 * 11 10 8 30 30 H 1.08995 * 109.46914 * 269.72881 * 17 16 4 31 31 H 1.09004 * 109.46867 * 29.72640 * 17 16 4 32 32 H 1.09004 * 109.47174 * 149.72665 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2017 1.1994 0.0000 4 6 3.5896 1.1483 0.0053 5 6 4.4131 2.4104 0.0118 6 7 4.8808 2.6951 -1.3471 7 6 6.1612 2.1536 -1.8095 8 6 4.1214 3.4674 -2.1848 9 1 3.4042 4.1635 -1.7757 10 6 4.2734 3.3556 -3.5601 11 7 4.9733 2.3625 -4.0663 12 14 3.4847 4.6147 -4.6924 13 1 4.4341 5.7319 -4.9281 14 1 3.1453 3.9719 -5.9874 15 1 2.2475 5.1412 -4.0619 16 6 4.1942 -0.0989 -0.0009 17 6 5.6971 -0.2097 -0.0014 18 7 3.4508 -1.1889 -0.0008 19 7 2.1682 -1.1417 -0.0005 20 1 -0.3633 -0.0004 1.0276 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3634 -0.8898 -0.5142 23 1 1.6796 2.1449 0.0008 24 1 3.8029 3.2406 0.3674 25 1 5.2709 2.2812 0.6718 26 1 5.9899 1.2132 -2.3333 27 1 6.6336 2.8657 -2.4861 28 1 6.8124 1.9791 -0.9530 29 1 5.0798 2.2846 -5.0273 30 1 6.0591 -0.2362 -1.0292 31 1 6.1251 0.6511 0.5125 32 1 5.9942 -1.1242 0.5121 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720592799.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:42 Heat of formation + Delta-G solvation = 50.099320 kcal Electronic energy + Delta-G solvation = -15227.855654 eV Core-core repulsion = 12802.686103 eV Total energy + Delta-G solvation = -2425.169550 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.96324 -37.93395 -35.35843 -34.73691 -32.72891 -30.98370 -28.16774 -28.08397 -27.27821 -24.37946 -23.68187 -21.82393 -19.02031 -18.21541 -17.06326 -16.65195 -16.37386 -15.81476 -15.42554 -15.18290 -14.58131 -14.15401 -14.12556 -13.62765 -13.44943 -13.21127 -13.13427 -12.91715 -12.78225 -12.48434 -12.29766 -12.03818 -11.98028 -11.52891 -10.73312 -10.71083 -10.52038 -10.24291 -8.86428 -7.88392 -5.36859 -0.00636 0.09597 1.45200 1.46213 1.54147 2.45900 2.65170 3.18101 3.27828 3.64025 3.74935 3.80069 3.86581 4.09577 4.28244 4.47322 4.64970 4.68014 4.75752 4.78942 4.84778 4.91141 5.00624 5.15249 5.20866 5.33337 5.38951 5.53745 5.61844 5.75543 6.27102 7.09158 7.78727 7.86719 8.21778 9.14010 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026924 B = 0.010299 C = 0.008488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.731045 B = 2717.994667 C = 3298.034378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.051 3.949 3 C -0.121 4.121 4 C -0.091 4.091 5 C 0.181 3.819 6 N -0.600 5.600 7 C 0.172 3.828 8 C -0.261 4.261 9 H 0.080 0.920 10 C -0.051 4.051 11 N -0.935 5.935 12 Si 0.966 3.034 13 H -0.284 1.284 14 H -0.302 1.302 15 H -0.264 1.264 16 C 0.060 3.940 17 C -0.094 4.094 18 N -0.283 5.283 19 N -0.293 5.293 20 H 0.101 0.899 21 H 0.092 0.908 22 H 0.077 0.923 23 H 0.163 0.837 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.004 0.996 27 H 0.016 0.984 28 H 0.044 0.956 29 H 0.247 0.753 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.695 0.225 9.505 10.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.151 4.151 4 C -0.106 4.106 5 C 0.054 3.946 6 N -0.321 5.321 7 C 0.028 3.972 8 C -0.391 4.391 9 H 0.098 0.902 10 C -0.246 4.246 11 N -0.581 5.581 12 Si 0.795 3.205 13 H -0.211 1.211 14 H -0.229 1.229 15 H -0.188 1.188 16 C -0.086 4.086 17 C -0.152 4.152 18 N -0.124 5.124 19 N -0.135 5.135 20 H 0.120 0.880 21 H 0.111 0.889 22 H 0.096 0.904 23 H 0.180 0.820 24 H 0.094 0.906 25 H 0.105 0.895 26 H 0.022 0.978 27 H 0.035 0.965 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.686 -1.454 9.333 10.140 hybrid contribution -0.243 1.772 -1.301 2.212 sum -3.929 0.319 8.033 8.948 Atomic orbital electron populations 1.20714 0.85056 1.04436 1.04651 1.23375 1.00632 0.90139 0.95304 1.22415 0.94275 1.00234 0.98152 1.22485 0.95949 0.98810 0.93323 1.20195 0.96449 0.90663 0.87244 1.44298 1.19061 1.57467 1.11258 1.20795 0.84971 0.96444 0.95032 1.19608 1.18495 1.13396 0.87581 0.90244 1.25850 1.00779 0.99145 0.98851 1.70231 1.45328 1.31544 1.11030 0.85277 0.78738 0.78503 0.78021 1.21095 1.22907 1.18803 1.23011 0.99852 0.90113 0.95658 1.20835 0.86658 1.04339 1.03358 1.72667 1.00065 1.28232 1.11450 1.72685 1.01719 1.26402 1.12664 0.88018 0.88900 0.90437 0.81980 0.90618 0.89543 0.97754 0.96491 0.93787 0.94391 0.90946 0.88580 0.89595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.15 10.20 71.24 0.73 -1.42 16 2 C 0.05 1.75 6.87 42.63 0.29 2.04 16 3 C -0.12 -4.23 9.56 22.51 0.22 -4.01 16 4 C -0.09 -3.45 5.51 -19.62 -0.11 -3.56 16 5 C 0.18 6.54 5.41 85.63 0.46 7.00 16 6 N -0.60 -27.59 2.91 -731.31 -2.12 -29.72 16 7 C 0.17 7.87 7.31 127.77 0.93 8.81 16 8 C -0.26 -13.32 9.66 84.04 0.81 -12.51 16 9 H 0.08 3.85 7.85 -2.91 -0.02 3.83 16 10 C -0.05 -2.73 5.13 84.86 0.43 -2.30 16 11 N -0.94 -54.33 10.65 21.65 0.23 -54.10 16 12 Si 0.97 43.64 29.57 68.60 2.03 45.67 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 14 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 15 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 16 C 0.06 2.35 6.86 42.63 0.29 2.64 16 17 C -0.09 -3.05 8.40 71.24 0.60 -2.45 16 18 N -0.28 -11.97 11.43 -47.63 -0.54 -12.52 16 19 N -0.29 -11.85 11.43 -47.63 -0.54 -12.40 16 20 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 21 H 0.09 1.89 8.09 -2.39 -0.02 1.87 16 22 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.16 4.77 8.06 -2.90 -0.02 4.75 16 24 H 0.08 2.50 7.94 -2.39 -0.02 2.48 16 25 H 0.09 2.63 6.24 -2.39 -0.01 2.61 16 26 H 0.00 0.22 6.19 -2.39 -0.01 0.20 16 27 H 0.02 0.84 7.27 -2.39 -0.02 0.82 16 28 H 0.04 1.62 6.63 -2.39 -0.02 1.60 16 29 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 30 H 0.07 2.63 6.29 -2.39 -0.02 2.61 16 31 H 0.10 2.66 5.36 -2.38 -0.01 2.65 16 32 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 Total: -1.00 -66.50 264.87 4.82 -61.68 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: 1.12 Total: 7.13 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 4.66 Total: -5.75 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -2.98 Total: -108.73 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -66.50 4.82 -61.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720592799.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.780 kcal (2) G-P(sol) polarization free energy of solvation -66.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds