Wall clock time and date at job start Mon Mar 30 2020 02:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00247 * 2 1 4 4 H 1.48506 * 109.46982 * 269.99952 * 3 2 1 5 5 H 1.48504 * 109.47107 * 29.99795 * 3 2 1 6 6 H 1.48496 * 109.47224 * 150.00170 * 3 2 1 7 7 C 1.37878 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00266 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99738 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47143 * 180.02562 * 9 7 2 11 11 C 1.46897 * 110.99958 * 180.02562 * 10 9 7 12 12 C 1.50704 * 109.46923 * 180.02562 * 11 10 9 13 13 C 1.39786 * 125.89696 * 94.99693 * 12 11 10 14 14 C 1.35539 * 107.89386 * 180.02562 * 13 12 11 15 15 N 1.34715 * 107.88239 * 359.87905 * 14 13 12 16 16 N 1.30710 * 125.89023 * 274.97284 * 12 11 10 17 17 C 1.47147 * 111.00938 * 180.22194 * 15 14 13 18 18 C 1.54376 * 105.64079 * 342.81263 * 17 15 14 19 19 C 1.51418 * 141.97278 * 179.72830 * 14 13 12 20 20 H 0.96998 * 119.99887 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47312 * 60.00608 * 9 7 2 22 22 H 1.09001 * 109.47493 * 299.99845 * 9 7 2 23 23 H 1.00894 * 110.99767 * 56.04603 * 10 9 7 24 24 H 1.08994 * 109.47407 * 60.00411 * 11 10 9 25 25 H 1.08996 * 109.46984 * 299.99956 * 11 10 9 26 26 H 1.07999 * 126.05304 * 0.05479 * 13 12 11 27 27 H 1.09002 * 110.22893 * 101.88068 * 17 15 14 28 28 H 1.09000 * 110.22761 * 223.75052 * 17 15 14 29 29 H 1.09000 * 110.97115 * 143.88304 * 18 17 15 30 30 H 1.09002 * 110.97310 * 267.65321 * 18 17 15 31 31 H 1.08993 * 110.49040 * 315.33607 * 19 14 13 32 32 H 1.09002 * 110.48515 * 77.97913 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 1.5052 -4.9071 -0.0011 12 6 2.5147 -6.0260 -0.0005 13 6 2.9897 -6.7007 1.1279 14 6 3.8809 -7.6330 0.7112 15 7 3.9654 -7.5537 -0.6310 16 7 3.0969 -6.5334 -1.0551 17 6 4.9159 -8.5451 -1.1592 18 6 5.7675 -8.9902 0.0491 19 6 4.8036 -8.7163 1.2287 20 1 -0.4850 0.8400 -0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.8404 -3.5488 0.7808 24 1 0.8807 -4.9813 -0.8913 25 1 0.8800 -4.9817 0.8886 26 1 2.6977 -6.5128 2.1505 27 1 4.3790 -9.3971 -1.5762 28 1 5.5502 -8.0907 -1.9203 29 1 6.0142 -10.0498 -0.0168 30 1 6.6704 -8.3854 0.1340 31 1 5.3568 -8.3629 2.0987 32 1 4.2370 -9.6144 1.4748 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825720351.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:26 Heat of formation + Delta-G solvation = 85.118274 kcal Electronic energy + Delta-G solvation = -14210.463382 eV Core-core repulsion = 11786.812367 eV Total energy + Delta-G solvation = -2423.651015 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.49492 -36.69239 -34.85461 -32.39772 -30.80358 -29.55119 -27.55502 -26.40565 -24.23611 -21.79750 -21.32090 -20.03320 -19.20748 -16.69513 -16.32089 -15.77851 -14.77945 -14.48245 -14.23885 -13.78385 -13.43777 -13.29166 -12.95065 -12.58217 -12.51488 -11.88354 -11.80814 -11.34364 -11.30643 -11.09472 -10.67543 -10.63948 -10.18257 -9.89628 -9.17852 -8.83861 -8.42629 -8.29729 -7.22373 -5.97993 -3.99403 2.05151 2.46665 3.03002 3.36752 3.41996 3.46441 3.94290 4.33545 4.47643 4.48677 4.67097 5.04282 5.20032 5.28486 5.30085 5.37977 5.47249 5.53474 5.64580 5.77698 5.91615 6.09430 6.23073 6.43146 6.93897 7.04371 7.29545 7.47197 7.83803 8.09997 8.17931 8.46126 8.66260 9.09662 9.65043 11.13261 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.057271 B = 0.004769 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.787270 B = 5869.816883 C = 6024.270294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.512 4.512 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.682 5.682 11 C 0.138 3.862 12 C 0.094 3.906 13 C -0.252 4.252 14 C 0.049 3.951 15 N -0.400 5.400 16 N -0.256 5.256 17 C 0.131 3.869 18 C -0.132 4.132 19 C -0.064 4.064 20 H 0.261 0.739 21 H 0.030 0.970 22 H -0.011 1.011 23 H 0.331 0.669 24 H 0.079 0.921 25 H 0.042 0.958 26 H 0.142 0.858 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.562 -19.230 2.779 21.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.551 4.551 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.314 5.314 11 C 0.007 3.993 12 C -0.073 4.073 13 C -0.282 4.282 14 C -0.080 4.080 15 N -0.183 5.183 16 N -0.076 5.076 17 C 0.010 3.990 18 C -0.171 4.171 19 C -0.102 4.102 20 H 0.071 0.929 21 H 0.048 0.952 22 H 0.007 0.993 23 H 0.147 0.853 24 H 0.098 0.902 25 H 0.060 0.940 26 H 0.160 0.840 27 H 0.102 0.898 28 H 0.107 0.893 29 H 0.117 0.883 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.634 -19.075 0.568 21.377 hybrid contribution -0.015 0.871 1.711 1.920 sum 9.620 -18.204 2.279 20.715 Atomic orbital electron populations 1.69966 1.06056 1.26746 1.51054 1.24980 0.94879 0.99321 0.95390 0.86471 0.79664 0.82977 0.78115 1.20634 1.21311 1.19871 1.21182 0.93556 0.90179 1.50164 0.91962 1.19594 0.90559 0.87108 0.95991 1.60627 1.21166 1.00342 1.49263 1.20230 0.91494 0.86432 1.01182 1.22488 0.97762 0.97107 0.89910 1.20593 1.05561 1.02069 0.99955 1.22121 0.99628 0.98933 0.87276 1.50159 1.34034 1.27785 1.06318 1.77500 1.06713 1.01186 1.22236 1.22213 0.89560 0.89494 0.97754 1.22827 0.98250 1.03027 0.92958 1.20863 0.94982 0.95787 0.98618 0.92936 0.95178 0.99314 0.85252 0.90228 0.93961 0.83988 0.89817 0.89288 0.88334 0.89527 0.88959 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.29 55.43 0.74 -26.65 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -15.03 9.32 -34.44 -0.32 -15.35 16 8 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 9 C 0.19 5.29 5.44 -4.97 -0.03 5.26 16 10 N -0.68 -15.94 6.48 -116.33 -0.75 -16.69 16 11 C 0.14 2.75 6.25 -4.98 -0.03 2.72 16 12 C 0.09 1.77 6.72 -82.49 -0.55 1.22 16 13 C -0.25 -4.03 10.74 -39.97 -0.43 -4.45 16 14 C 0.05 0.67 7.49 -81.94 -0.61 0.06 16 15 N -0.40 -6.09 4.85 -55.72 -0.27 -6.37 16 16 N -0.26 -4.96 12.70 33.64 0.43 -4.54 16 17 C 0.13 1.25 7.77 -2.97 -0.02 1.23 16 18 C -0.13 -0.84 7.19 -25.07 -0.18 -1.02 16 19 C -0.06 -0.52 6.86 -26.59 -0.18 -0.71 16 20 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 21 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 22 H -0.01 -0.31 8.14 -51.93 -0.42 -0.73 16 23 H 0.33 7.43 8.71 -39.29 -0.34 7.08 16 24 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 275.73 15.07 4.16 4.16 Total: -1.00 -34.41 275.73 -7.72 -42.13 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -4.54 Total: 0.27 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -2.46 Total: -9.52 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: 0.14 Total: -54.24 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -34.41 -7.72 -42.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825720351.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.253 kcal (2) G-P(sol) polarization free energy of solvation -34.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds