Wall clock time and date at job start Mon Mar 30 2020 02:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47569 * 15.00305 * 3 2 1 5 5 C 1.34784 * 119.99864 * 89.99805 * 4 3 2 6 6 O 1.21283 * 119.99649 * 359.72839 * 5 4 3 7 7 C 1.50694 * 119.99988 * 179.72721 * 5 4 3 8 8 H 1.09002 * 109.47054 * 60.00213 * 7 5 4 9 9 C 1.53000 * 109.47355 * 300.00132 * 7 5 4 10 10 C 1.50698 * 109.47166 * 179.97438 * 7 5 4 11 11 H 1.08001 * 120.00262 * 0.02562 * 10 7 5 12 12 C 1.37878 * 120.00084 * 179.97438 * 10 7 5 13 13 N 1.31513 * 120.00095 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99895 * 180.02562 * 12 10 7 15 15 H 1.48498 * 109.47258 * 60.00121 * 14 12 10 16 16 H 1.48501 * 109.47447 * 180.02562 * 14 12 10 17 17 H 1.48510 * 109.47259 * 300.00100 * 14 12 10 18 18 C 1.46494 * 120.00444 * 269.72515 * 4 3 2 19 19 C 1.53000 * 117.49751 * 9.02214 * 18 4 3 20 20 C 1.53004 * 117.49867 * 300.36385 * 18 4 3 21 21 H 4.40642 * 5.51331 * 180.02562 * 4 1 2 22 22 H 1.09002 * 109.46972 * 255.00037 * 3 2 1 23 23 H 1.08996 * 109.46917 * 135.00722 * 3 2 1 24 24 H 1.08998 * 109.47544 * 180.02562 * 9 7 5 25 25 H 1.09007 * 109.46721 * 300.00289 * 9 7 5 26 26 H 1.08995 * 109.47131 * 59.99934 * 9 7 5 27 27 H 0.97003 * 119.99629 * 180.02562 * 13 12 10 28 28 H 1.09000 * 115.55377 * 154.68536 * 18 4 3 29 29 H 1.09002 * 117.49911 * 0.02562 * 19 18 4 30 30 H 1.08997 * 117.50366 * 145.02004 * 19 18 4 31 31 H 1.09006 * 117.49844 * 214.97522 * 20 18 4 32 32 H 1.08998 * 117.49468 * 359.97149 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3332 -0.3575 5 6 3.3598 -1.6446 -1.6495 6 8 3.1525 -0.8221 -2.5164 7 6 3.8687 -3.0146 -2.0168 8 1 3.1549 -3.7684 -1.6846 9 6 5.2185 -3.2562 -1.3381 10 6 4.0343 -3.1048 -3.5119 11 1 3.7954 -2.2549 -4.1340 12 6 4.4919 -4.2721 -4.0857 13 7 4.7833 -5.3069 -3.3282 14 14 4.6979 -4.3836 -5.9389 15 1 5.6699 -3.3563 -6.3917 16 1 5.1992 -5.7337 -6.3010 17 1 3.3876 -4.1496 -6.5976 18 6 3.3854 -2.3266 0.6896 19 6 2.9212 -1.9902 2.1081 20 6 4.4133 -1.9740 1.7667 21 1 -1.0498 -0.0003 -0.0003 22 1 3.0092 0.2668 0.9927 23 1 3.0090 0.7276 -0.7266 24 1 5.5868 -4.2470 -1.6041 25 1 5.9323 -2.5023 -1.6703 26 1 5.0982 -3.1911 -0.2568 27 1 5.1056 -6.1279 -3.7319 28 1 3.3244 -3.3681 0.3739 29 1 2.4291 -1.0298 2.2621 30 1 2.5552 -2.8103 2.7257 31 1 5.0283 -2.7836 2.1598 32 1 4.9035 -1.0030 1.6958 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832222211.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:25 Heat of formation + Delta-G solvation = 51.128964 kcal Electronic energy + Delta-G solvation = -15109.919105 eV Core-core repulsion = 12652.501452 eV Total energy + Delta-G solvation = -2457.417653 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.57914 -36.91706 -34.21782 -33.49787 -31.92165 -30.45107 -26.95673 -25.13055 -22.76568 -22.28880 -21.34760 -19.10163 -17.66849 -16.55541 -16.30990 -15.39981 -14.96184 -14.58168 -14.15357 -13.63337 -12.93904 -12.83886 -12.66480 -12.03474 -11.65689 -11.38531 -11.01467 -10.87237 -10.73498 -10.41003 -10.37959 -10.25477 -10.19523 -9.98089 -9.90329 -8.94297 -8.60377 -8.29531 -8.10506 -6.01145 -4.04113 2.75798 3.05442 3.37634 3.39772 3.45684 3.53965 3.77836 4.11073 4.47929 4.64369 4.93064 5.10855 5.14454 5.32102 5.35243 5.64739 5.75935 5.94199 6.08525 6.12284 6.20226 6.29012 6.70048 6.88576 6.94212 7.05524 7.48848 7.77255 7.82129 7.95641 8.10831 8.37609 9.03355 9.15470 9.60901 11.06376 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.033823 B = 0.008620 C = 0.007396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.631997 B = 3247.646430 C = 3784.854530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.188 4.188 3 C 0.216 3.784 4 N -0.597 5.597 5 C 0.526 3.474 6 O -0.537 6.537 7 C 0.034 3.966 8 H 0.052 0.948 9 C -0.142 4.142 10 C -0.502 4.502 11 H 0.073 0.927 12 C 0.059 3.941 13 N -0.897 5.897 14 Si 0.900 3.100 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.277 1.277 18 C 0.093 3.907 19 C -0.196 4.196 20 C -0.195 4.195 21 H 0.214 0.786 22 H 0.092 0.908 23 H 0.103 0.897 24 H 0.091 0.909 25 H 0.028 0.972 26 H 0.029 0.971 27 H 0.261 0.739 28 H 0.139 0.861 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.710 5.238 11.304 12.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.189 4.189 3 C 0.093 3.907 4 N -0.330 5.330 5 C 0.319 3.681 6 O -0.412 6.412 7 C 0.013 3.987 8 H 0.069 0.931 9 C -0.200 4.200 10 C -0.540 4.540 11 H 0.091 0.909 12 C -0.141 4.141 13 N -0.536 5.536 14 Si 0.728 3.272 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.202 1.202 18 C -0.012 4.012 19 C -0.234 4.234 20 C -0.234 4.234 21 H 0.231 0.769 22 H 0.110 0.890 23 H 0.121 0.879 24 H 0.110 0.890 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.157 0.843 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.723 5.494 10.748 12.374 hybrid contribution -0.138 -0.114 -0.829 0.849 sum -2.862 5.380 9.918 11.641 Atomic orbital electron populations 1.24819 0.95831 0.99957 1.01862 1.23743 0.95086 1.00521 0.99596 1.18188 0.83523 0.87131 1.01836 1.47786 1.66663 1.11719 1.06838 1.22138 0.74509 0.92032 0.79450 1.90539 1.51360 1.51597 1.47655 1.18844 0.95019 0.86930 0.97908 0.93082 1.21955 0.97646 1.04129 0.96255 1.21116 1.43431 0.99225 0.90266 0.90931 1.24930 0.95290 0.95508 0.98421 1.69861 1.45618 1.03208 1.34911 0.86517 0.78625 0.76835 0.85224 1.20200 1.21352 1.20227 1.21760 1.02086 0.94082 0.83257 1.23420 0.97697 1.03542 0.98733 1.23432 0.92063 1.03641 1.04241 0.76880 0.88996 0.87894 0.89029 0.95232 0.95231 0.92930 0.84325 0.88701 0.88190 0.88013 0.88784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.01 19.25 29.55 0.57 -2.44 16 2 C -0.19 -3.08 13.44 -37.12 -0.50 -3.57 16 3 C 0.22 3.45 5.20 -6.83 -0.04 3.41 16 4 N -0.60 -11.07 2.77 -169.43 -0.47 -11.54 16 5 C 0.53 12.43 7.06 -10.98 -0.08 12.35 16 6 O -0.54 -14.37 15.04 5.56 0.08 -14.28 16 7 C 0.03 0.85 1.85 -92.93 -0.17 0.68 16 8 H 0.05 1.34 7.57 -51.93 -0.39 0.95 16 9 C -0.14 -3.26 8.59 37.16 0.32 -2.94 16 10 C -0.50 -14.44 8.38 -34.44 -0.29 -14.73 16 11 H 0.07 2.21 6.75 -52.49 -0.35 1.85 16 12 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 13 N -0.90 -25.21 11.32 55.43 0.63 -24.58 16 14 Si 0.90 22.05 29.54 -169.99 -5.02 17.02 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 C 0.09 1.45 4.33 -67.93 -0.29 1.16 16 19 C -0.20 -2.36 9.72 -26.69 -0.26 -2.62 16 20 C -0.19 -2.43 9.30 -26.69 -0.25 -2.68 16 21 H 0.21 2.26 7.80 -54.10 -0.42 1.84 16 22 H 0.09 1.16 6.31 -51.93 -0.33 0.83 16 23 H 0.10 1.74 7.42 -51.93 -0.39 1.35 16 24 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 25 H 0.03 0.68 8.14 -51.92 -0.42 0.26 16 26 H 0.03 0.56 4.41 -51.93 -0.23 0.33 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.14 2.31 6.16 -51.93 -0.32 1.99 16 29 H 0.09 1.11 6.27 -51.93 -0.33 0.78 16 30 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.09 1.14 8.11 -51.93 -0.42 0.72 16 LS Contribution 272.02 15.07 4.10 4.10 Total: -1.00 -31.72 272.02 -5.66 -37.38 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -3.90 Total: 1.73 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -1.08 Total: -9.81 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.16 Total: -36.13 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: 0.08 Total: -14.28 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.72 -5.66 -37.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832222211.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.505 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds