Wall clock time and date at job start Mon Mar 30 2020 02:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47569 * 15.00305 * 3 2 1 5 5 C 1.34784 * 119.99864 * 89.99805 * 4 3 2 6 6 O 1.21283 * 119.99649 * 359.72839 * 5 4 3 7 7 C 1.50694 * 119.99988 * 179.72721 * 5 4 3 8 8 H 1.09002 * 109.47054 * 60.00213 * 7 5 4 9 9 C 1.53000 * 109.47355 * 300.00132 * 7 5 4 10 10 C 1.50698 * 109.47166 * 179.97438 * 7 5 4 11 11 H 1.08001 * 120.00262 * 0.02562 * 10 7 5 12 12 C 1.37878 * 120.00084 * 179.97438 * 10 7 5 13 13 N 1.31513 * 120.00095 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99895 * 180.02562 * 12 10 7 15 15 H 1.48498 * 109.47258 * 60.00121 * 14 12 10 16 16 H 1.48501 * 109.47447 * 180.02562 * 14 12 10 17 17 H 1.48510 * 109.47259 * 300.00100 * 14 12 10 18 18 C 1.46494 * 120.00444 * 269.72515 * 4 3 2 19 19 C 1.53000 * 117.49751 * 9.02214 * 18 4 3 20 20 C 1.53004 * 117.49867 * 300.36385 * 18 4 3 21 21 H 4.40642 * 5.51331 * 180.02562 * 4 1 2 22 22 H 1.09002 * 109.46972 * 255.00037 * 3 2 1 23 23 H 1.08996 * 109.46917 * 135.00722 * 3 2 1 24 24 H 1.08998 * 109.47544 * 180.02562 * 9 7 5 25 25 H 1.09007 * 109.46721 * 300.00289 * 9 7 5 26 26 H 1.08995 * 109.47131 * 59.99934 * 9 7 5 27 27 H 0.97003 * 119.99629 * 180.02562 * 13 12 10 28 28 H 1.09000 * 115.55377 * 154.68536 * 18 4 3 29 29 H 1.09002 * 117.49911 * 0.02562 * 19 18 4 30 30 H 1.08997 * 117.50366 * 145.02004 * 19 18 4 31 31 H 1.09006 * 117.49844 * 214.97522 * 20 18 4 32 32 H 1.08998 * 117.49468 * 359.97149 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3332 -0.3575 5 6 3.3598 -1.6446 -1.6495 6 8 3.1525 -0.8221 -2.5164 7 6 3.8687 -3.0146 -2.0168 8 1 3.1549 -3.7684 -1.6846 9 6 5.2185 -3.2562 -1.3381 10 6 4.0343 -3.1048 -3.5119 11 1 3.7954 -2.2549 -4.1340 12 6 4.4919 -4.2721 -4.0857 13 7 4.7833 -5.3069 -3.3282 14 14 4.6979 -4.3836 -5.9389 15 1 5.6699 -3.3563 -6.3917 16 1 5.1992 -5.7337 -6.3010 17 1 3.3876 -4.1496 -6.5976 18 6 3.3854 -2.3266 0.6896 19 6 2.9212 -1.9902 2.1081 20 6 4.4133 -1.9740 1.7667 21 1 -1.0498 -0.0003 -0.0003 22 1 3.0092 0.2668 0.9927 23 1 3.0090 0.7276 -0.7266 24 1 5.5868 -4.2470 -1.6041 25 1 5.9323 -2.5023 -1.6703 26 1 5.0982 -3.1911 -0.2568 27 1 5.1056 -6.1279 -3.7319 28 1 3.3244 -3.3681 0.3739 29 1 2.4291 -1.0298 2.2621 30 1 2.5552 -2.8103 2.7257 31 1 5.0283 -2.7836 2.1598 32 1 4.9035 -1.0030 1.6958 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832222211.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:24 Heat of formation + Delta-G solvation = 31.589061 kcal Electronic energy + Delta-G solvation = -15110.766418 eV Core-core repulsion = 12652.501452 eV Total energy + Delta-G solvation = -2458.264967 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.15187 -38.38858 -35.97476 -35.03964 -33.41321 -32.32029 -28.37669 -27.18341 -24.50318 -23.34110 -22.78226 -20.59697 -18.89098 -18.33612 -18.11573 -17.11151 -16.58570 -16.20899 -15.56985 -15.14342 -14.73836 -14.40327 -14.02614 -13.52380 -13.49987 -12.96777 -12.72663 -12.59385 -12.31560 -12.21012 -12.03274 -11.85833 -11.60594 -11.42598 -11.14112 -11.00812 -10.60174 -10.26285 -9.50776 -8.15688 -6.26373 1.39297 1.41277 1.45369 1.51500 1.79257 1.86652 2.37873 2.50054 2.99845 3.13335 3.52574 3.76140 3.94519 4.06739 4.16465 4.35557 4.57618 4.76320 4.81782 4.93255 5.00964 5.04349 5.08212 5.12988 5.27932 5.48248 5.58728 5.74151 5.94345 6.19801 6.51693 6.65092 6.80818 7.35127 7.44297 8.89889 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.033823 B = 0.008620 C = 0.007396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.631997 B = 3247.646430 C = 3784.854530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.236 4.236 3 C 0.215 3.785 4 N -0.586 5.586 5 C 0.523 3.477 6 O -0.583 6.583 7 C 0.032 3.968 8 H 0.036 0.964 9 C -0.125 4.125 10 C -0.534 4.534 11 H 0.046 0.954 12 C 0.021 3.979 13 N -0.909 5.909 14 Si 0.955 3.045 15 H -0.276 1.276 16 H -0.272 1.272 17 H -0.278 1.278 18 C 0.045 3.955 19 C -0.166 4.166 20 C -0.178 4.178 21 H 0.249 0.751 22 H 0.130 0.870 23 H 0.086 0.914 24 H 0.069 0.931 25 H 0.017 0.983 26 H 0.068 0.932 27 H 0.266 0.734 28 H 0.123 0.877 29 H 0.104 0.896 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.010 5.291 13.119 14.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.238 4.238 3 C 0.093 3.907 4 N -0.317 5.317 5 C 0.315 3.685 6 O -0.462 6.462 7 C 0.011 3.989 8 H 0.053 0.947 9 C -0.183 4.183 10 C -0.572 4.572 11 H 0.064 0.936 12 C -0.178 4.178 13 N -0.548 5.548 14 Si 0.780 3.220 15 H -0.201 1.201 16 H -0.196 1.196 17 H -0.203 1.203 18 C -0.059 4.059 19 C -0.203 4.203 20 C -0.216 4.216 21 H 0.266 0.734 22 H 0.148 0.852 23 H 0.104 0.896 24 H 0.088 0.912 25 H 0.036 0.964 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.140 0.860 29 H 0.122 0.878 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.022 5.535 12.633 14.119 hybrid contribution -0.125 -0.131 -1.300 1.312 sum -3.147 5.403 11.333 12.944 Atomic orbital electron populations 1.25739 0.96785 0.97712 0.99952 1.23993 0.95762 1.02548 1.01460 1.18354 0.83973 0.85085 1.03240 1.47564 1.65069 1.13285 1.05737 1.21727 0.74703 0.91013 0.81059 1.90501 1.53689 1.52455 1.49547 1.18724 0.95819 0.87970 0.96372 0.94662 1.21758 0.95846 1.02157 0.98518 1.21273 1.44751 0.98925 0.92253 0.93609 1.25580 0.94752 0.95081 1.02394 1.69938 1.45223 1.03363 1.36260 0.85668 0.78388 0.77431 0.80485 1.20136 1.19625 1.20345 1.21939 1.06978 0.92821 0.84151 1.23495 0.97284 1.04558 0.94967 1.23536 0.92574 1.04501 1.01009 0.73438 0.85197 0.89568 0.91230 0.96370 0.91334 0.92512 0.85975 0.87820 0.86097 0.86341 0.88051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.95 19.25 74.32 1.43 -3.52 16 2 C -0.24 -7.42 13.44 31.13 0.42 -7.00 16 3 C 0.21 6.67 5.20 84.58 0.44 7.11 16 4 N -0.59 -21.55 2.77 -808.33 -2.24 -23.79 16 5 C 0.52 25.46 7.06 87.65 0.62 26.08 16 6 O -0.58 -32.60 15.04 -3.04 -0.05 -32.65 16 7 C 0.03 1.68 1.85 -12.29 -0.02 1.65 16 8 H 0.04 1.93 7.57 -2.39 -0.02 1.91 16 9 C -0.13 -5.80 8.59 71.98 0.62 -5.18 16 10 C -0.53 -31.86 8.38 25.60 0.21 -31.65 16 11 H 0.05 2.93 6.75 -2.91 -0.02 2.91 16 12 C 0.02 1.21 5.30 84.66 0.45 1.66 16 13 N -0.91 -51.55 11.32 21.45 0.24 -51.31 16 14 Si 0.95 45.69 29.54 68.60 2.03 47.72 16 15 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 17 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 18 C 0.05 1.33 4.33 44.99 0.19 1.52 16 19 C -0.17 -3.38 9.72 30.62 0.30 -3.08 16 20 C -0.18 -3.83 9.30 30.62 0.28 -3.55 16 21 H 0.25 4.40 7.80 -4.43 -0.03 4.37 16 22 H 0.13 2.93 6.31 -2.39 -0.02 2.91 16 23 H 0.09 2.96 7.42 -2.39 -0.02 2.94 16 24 H 0.07 3.54 6.07 -2.39 -0.01 3.52 16 25 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 26 H 0.07 2.57 4.41 -2.39 -0.01 2.56 16 27 H 0.27 14.24 8.31 -92.71 -0.77 13.46 16 28 H 0.12 4.00 6.16 -2.39 -0.01 3.99 16 29 H 0.10 1.99 6.27 -2.39 -0.01 1.97 16 30 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.12 2.20 8.14 -2.38 -0.02 2.18 16 32 H 0.10 2.09 8.11 -2.39 -0.02 2.07 16 Total: -1.00 -70.86 272.02 6.04 -64.82 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 1.11 Total: 11.15 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: 4.94 Total: -15.94 kcal Atomic # 7 Polarization: -73.10 SS G_CDS: -2.00 Total: -75.10 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -0.05 Total: -32.65 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -70.86 6.04 -64.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832222211.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.412 kcal (2) G-P(sol) polarization free energy of solvation -70.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds