Wall clock time and date at job start Mon Mar 30 2020 02:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00215 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99800 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47316 * 179.97438 * 10 9 7 12 12 C 1.40056 * 126.09767 * 259.69122 * 11 10 9 13 13 N 1.31034 * 108.24883 * 179.81041 * 12 11 10 14 14 N 1.39650 * 108.12604 * 0.41761 * 13 12 11 15 15 C 1.34741 * 126.09918 * 79.99587 * 11 10 9 16 16 C 1.50871 * 127.76845 * 0.07953 * 15 11 10 17 17 C 1.53427 * 108.18535 * 164.20354 * 16 15 11 18 18 C 1.53152 * 109.19910 * 48.53422 * 17 16 15 19 19 C 1.46589 * 127.54176 * 179.80600 * 14 13 12 20 20 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 21 21 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 22 22 H 1.09007 * 109.47081 * 299.99904 * 10 9 7 23 23 H 1.09001 * 109.47147 * 60.00061 * 10 9 7 24 24 H 1.07993 * 125.87485 * 359.95158 * 12 11 10 25 25 H 1.08999 * 109.72251 * 283.85016 * 16 15 11 26 26 H 1.09008 * 109.72009 * 44.50662 * 16 15 11 27 27 H 1.09004 * 109.50383 * 288.62524 * 17 16 15 28 28 H 1.08997 * 109.57043 * 168.48493 * 17 16 15 29 29 H 1.09005 * 109.45879 * 170.55146 * 18 17 16 30 30 H 1.08997 * 109.45626 * 50.60627 * 18 17 16 31 31 H 1.09001 * 109.58470 * 282.43838 * 19 14 13 32 32 H 1.08996 * 109.58843 * 42.71852 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 6 1.0786 -4.8022 0.0117 12 6 0.7010 -5.5583 1.1285 13 7 -0.1689 -6.4579 0.7400 14 7 -0.3639 -6.3085 -0.6347 15 6 0.4144 -5.2853 -1.0565 16 6 0.4907 -4.8077 -2.4856 17 6 -0.1182 -5.8908 -3.3857 18 6 -1.4686 -6.3250 -2.8082 19 6 -1.2445 -7.0958 -1.5028 20 1 -0.4849 0.8401 0.0004 21 1 0.3555 -2.3880 0.0092 22 1 2.6812 -3.7166 -0.8876 23 1 2.6880 -3.7126 0.8924 24 1 1.0627 -5.4217 2.1369 25 1 -0.0723 -3.8806 -2.5941 26 1 1.5317 -4.6411 -2.7627 27 1 0.5528 -6.7488 -3.4274 28 1 -0.2627 -5.4923 -4.3898 29 1 -1.9808 -6.9665 -3.5253 30 1 -2.0786 -5.4438 -2.6094 31 1 -0.7782 -8.0565 -1.7214 32 1 -2.1996 -7.2584 -1.0035 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953067932.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:05 Heat of formation + Delta-G solvation = 77.574597 kcal Electronic energy + Delta-G solvation = -14908.038651 eV Core-core repulsion = 12484.060518 eV Total energy + Delta-G solvation = -2423.978133 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.14347 -36.38471 -34.67623 -32.42463 -30.73745 -29.99513 -28.13392 -24.85406 -24.01362 -22.50143 -21.74058 -20.01513 -18.47940 -17.10536 -15.85496 -15.56105 -14.53410 -14.41624 -14.20703 -13.93553 -13.61252 -13.28023 -12.97363 -12.63204 -12.06201 -11.74762 -11.49592 -11.06814 -10.96610 -10.86410 -10.73786 -10.71578 -10.20053 -9.95851 -9.67040 -8.79583 -8.78484 -7.86306 -6.80719 -5.67662 -2.95289 2.28207 2.81416 3.26333 3.48986 3.53336 3.54604 4.46211 4.64466 4.69108 4.76879 4.91719 5.21045 5.27912 5.41119 5.58284 5.61603 5.64132 5.78303 5.87942 5.99865 6.05485 6.15445 6.26189 6.36891 6.51533 6.77454 7.02499 7.14753 7.43287 7.76969 8.15620 8.51299 9.62414 10.23393 10.59462 11.55189 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039213 B = 0.007090 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.883445 B = 3948.161255 C = 4275.553948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.727 5.727 10 C 0.227 3.773 11 C -0.226 4.226 12 C 0.058 3.942 13 N -0.310 5.310 14 N -0.379 5.379 15 C 0.096 3.904 16 C -0.056 4.056 17 C -0.125 4.125 18 C -0.137 4.137 19 C 0.138 3.862 20 H 0.254 0.746 21 H 0.384 0.616 22 H 0.022 0.978 23 H 0.025 0.975 24 H 0.180 0.820 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.340 -13.743 -6.291 15.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.371 5.371 10 C 0.099 3.901 11 C -0.237 4.237 12 C -0.128 4.128 13 N -0.130 5.130 14 N -0.163 5.163 15 C -0.031 4.031 16 C -0.095 4.095 17 C -0.162 4.162 18 C -0.175 4.175 19 C 0.016 3.984 20 H 0.064 0.936 21 H 0.217 0.783 22 H 0.039 0.961 23 H 0.042 0.958 24 H 0.197 0.803 25 H 0.113 0.887 26 H 0.109 0.891 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.063 -14.696 -5.995 16.005 hybrid contribution 0.570 1.601 -0.070 1.701 sum -1.493 -13.095 -6.064 14.508 Atomic orbital electron populations 1.69670 1.05093 1.25524 1.58047 1.24723 0.95480 0.97554 1.03378 0.86282 0.78482 0.83706 0.77805 1.21358 1.21814 1.21340 1.19231 0.91014 0.84222 1.42252 0.91220 1.42433 1.05905 0.99538 1.89237 1.18899 0.90823 0.82568 0.97825 1.20057 1.07895 1.04021 0.91735 1.23836 0.95627 0.93596 0.99752 1.77165 1.21378 1.24854 0.89625 1.48469 1.34903 1.27009 1.05904 1.20761 0.94493 0.90989 0.96811 1.20412 1.03185 0.98623 0.87249 1.21678 0.95992 0.99081 0.99489 1.21951 0.98814 1.01346 0.95413 1.21642 0.93657 0.93801 0.89263 0.93630 0.78292 0.96056 0.95750 0.80345 0.88750 0.89088 0.91617 0.90468 0.89513 0.90419 0.90614 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.78 13.06 55.49 0.72 -28.05 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -19.04 5.59 -61.08 -0.34 -19.38 16 10 C 0.23 4.87 6.53 -5.19 -0.03 4.84 16 11 C -0.23 -4.38 5.46 -105.18 -0.57 -4.96 16 12 C 0.06 1.06 11.97 -17.21 -0.21 0.86 16 13 N -0.31 -5.69 12.62 30.70 0.39 -5.30 16 14 N -0.38 -6.24 4.04 -56.95 -0.23 -6.47 16 15 C 0.10 1.68 6.59 -82.22 -0.54 1.14 16 16 C -0.06 -0.82 6.06 -27.58 -0.17 -0.99 16 17 C -0.12 -1.33 5.97 -26.43 -0.16 -1.49 16 18 C -0.14 -1.36 5.93 -26.53 -0.16 -1.52 16 19 C 0.14 1.62 7.28 -3.87 -0.03 1.59 16 20 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 21 H 0.38 10.81 7.66 -40.82 -0.31 10.49 16 22 H 0.02 0.45 8.09 -51.93 -0.42 0.03 16 23 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.18 2.84 8.06 -52.49 -0.42 2.42 16 25 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 26 H 0.09 1.31 8.09 -51.92 -0.42 0.89 16 27 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.87 8.12 -51.93 -0.42 0.45 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 270.58 15.07 4.08 4.08 Total: -1.00 -32.86 270.58 -7.02 -39.88 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -4.50 Total: 5.55 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -2.11 Total: -7.93 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: 0.54 Total: -59.20 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.86 -7.02 -39.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067932.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.452 kcal (2) G-P(sol) polarization free energy of solvation -32.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds