Wall clock time and date at job start Mon Mar 30 2020 02:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00215 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99800 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47316 * 179.97438 * 10 9 7 12 12 C 1.40056 * 126.09767 * 259.69122 * 11 10 9 13 13 N 1.31034 * 108.24883 * 179.81041 * 12 11 10 14 14 N 1.39650 * 108.12604 * 0.41761 * 13 12 11 15 15 C 1.34741 * 126.09918 * 79.99587 * 11 10 9 16 16 C 1.50871 * 127.76845 * 0.07953 * 15 11 10 17 17 C 1.53427 * 108.18535 * 164.20354 * 16 15 11 18 18 C 1.53152 * 109.19910 * 48.53422 * 17 16 15 19 19 C 1.46589 * 127.54176 * 179.80600 * 14 13 12 20 20 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 21 21 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 22 22 H 1.09007 * 109.47081 * 299.99904 * 10 9 7 23 23 H 1.09001 * 109.47147 * 60.00061 * 10 9 7 24 24 H 1.07993 * 125.87485 * 359.95158 * 12 11 10 25 25 H 1.08999 * 109.72251 * 283.85016 * 16 15 11 26 26 H 1.09008 * 109.72009 * 44.50662 * 16 15 11 27 27 H 1.09004 * 109.50383 * 288.62524 * 17 16 15 28 28 H 1.08997 * 109.57043 * 168.48493 * 17 16 15 29 29 H 1.09005 * 109.45879 * 170.55146 * 18 17 16 30 30 H 1.08997 * 109.45626 * 50.60627 * 18 17 16 31 31 H 1.09001 * 109.58470 * 282.43838 * 19 14 13 32 32 H 1.08996 * 109.58843 * 42.71852 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 6 1.0786 -4.8022 0.0117 12 6 0.7010 -5.5583 1.1285 13 7 -0.1689 -6.4579 0.7400 14 7 -0.3639 -6.3085 -0.6347 15 6 0.4144 -5.2853 -1.0565 16 6 0.4907 -4.8077 -2.4856 17 6 -0.1182 -5.8908 -3.3857 18 6 -1.4686 -6.3250 -2.8082 19 6 -1.2445 -7.0958 -1.5028 20 1 -0.4849 0.8401 0.0004 21 1 0.3555 -2.3880 0.0092 22 1 2.6812 -3.7166 -0.8876 23 1 2.6880 -3.7126 0.8924 24 1 1.0627 -5.4217 2.1369 25 1 -0.0723 -3.8806 -2.5941 26 1 1.5317 -4.6411 -2.7627 27 1 0.5528 -6.7488 -3.4274 28 1 -0.2627 -5.4923 -4.3898 29 1 -1.9808 -6.9665 -3.5253 30 1 -2.0786 -5.4438 -2.6094 31 1 -0.7782 -8.0565 -1.7214 32 1 -2.1996 -7.2584 -1.0035 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000953067932.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:04 Heat of formation + Delta-G solvation = 55.702082 kcal Electronic energy + Delta-G solvation = -14908.987114 eV Core-core repulsion = 12484.060518 eV Total energy + Delta-G solvation = -2424.926596 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.46243 -37.45715 -36.55400 -34.04702 -32.45812 -31.19966 -29.67658 -26.62561 -25.11759 -24.29581 -22.99025 -21.34646 -19.71667 -19.14168 -17.21768 -16.81833 -16.40463 -15.55591 -15.39540 -15.20211 -15.12790 -14.91095 -14.56947 -14.09087 -13.50398 -13.12588 -12.88153 -12.78559 -12.66896 -12.16944 -11.96378 -11.89278 -11.82196 -11.77009 -11.45025 -10.89505 -10.09221 -9.30156 -8.93518 -7.89226 -5.17893 0.92347 1.49753 1.53674 1.59317 1.64543 1.80484 2.62373 3.42769 3.49415 3.70071 3.82287 3.85754 4.09664 4.31596 4.35108 4.45018 4.47996 4.57477 4.72079 4.78100 4.85651 4.97466 5.04726 5.07621 5.17277 5.29019 5.46041 5.53532 5.72265 6.17395 6.31356 6.77801 7.37973 8.14304 8.40538 9.34256 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039213 B = 0.007090 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.883445 B = 3948.161255 C = 4275.553948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.077 4.077 3 Si 0.975 3.025 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.279 1.279 7 C -0.242 4.242 8 H 0.079 0.921 9 N -0.737 5.737 10 C 0.233 3.767 11 C -0.259 4.259 12 C 0.048 3.952 13 N -0.327 5.327 14 N -0.374 5.374 15 C 0.099 3.901 16 C -0.058 4.058 17 C -0.117 4.117 18 C -0.131 4.131 19 C 0.123 3.877 20 H 0.249 0.751 21 H 0.370 0.630 22 H 0.027 0.973 23 H 0.026 0.974 24 H 0.193 0.807 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.128 0.872 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.074 -14.752 -7.540 16.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.269 4.269 3 Si 0.804 3.196 4 H -0.201 1.201 5 H -0.224 1.224 6 H -0.205 1.205 7 C -0.374 4.374 8 H 0.096 0.904 9 N -0.379 5.379 10 C 0.106 3.894 11 C -0.270 4.270 12 C -0.137 4.137 13 N -0.148 5.148 14 N -0.158 5.158 15 C -0.030 4.030 16 C -0.097 4.097 17 C -0.155 4.155 18 C -0.169 4.169 19 C 0.004 3.996 20 H 0.058 0.942 21 H 0.201 0.799 22 H 0.045 0.955 23 H 0.044 0.956 24 H 0.210 0.790 25 H 0.091 0.909 26 H 0.108 0.892 27 H 0.097 0.903 28 H 0.117 0.883 29 H 0.146 0.854 30 H 0.080 0.920 31 H 0.118 0.882 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.771 -15.755 -7.246 17.432 hybrid contribution 0.474 1.809 0.295 1.893 sum -1.297 -13.946 -6.951 15.636 Atomic orbital electron populations 1.69846 1.06733 1.25937 1.59797 1.25572 0.96345 1.01080 1.03919 0.85186 0.77125 0.79036 0.78252 1.20135 1.22354 1.20498 1.19671 0.91619 0.85235 1.40885 0.90356 1.42625 1.05368 1.00729 1.89169 1.18880 0.91098 0.81588 0.97838 1.19993 1.09369 1.04479 0.93199 1.24090 0.95699 0.93536 1.00352 1.77100 1.21552 1.25166 0.90999 1.48896 1.34583 1.26740 1.05612 1.21128 0.93560 0.90640 0.97636 1.20494 1.03288 0.99227 0.86699 1.21681 0.96273 0.98049 0.99473 1.21988 0.98420 1.01272 0.95203 1.22155 0.93502 0.94542 0.89393 0.94195 0.79901 0.95486 0.95561 0.78979 0.90884 0.89159 0.90335 0.88264 0.85432 0.92048 0.88210 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.93 13.06 21.65 0.28 -60.65 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 3 Si 0.98 46.69 29.55 68.60 2.03 48.72 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 7 C -0.24 -13.83 9.99 84.03 0.84 -12.99 16 8 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 9 N -0.74 -39.23 5.59 -347.17 -1.94 -41.17 16 10 C 0.23 10.10 6.53 85.63 0.56 10.65 16 11 C -0.26 -10.12 5.46 -20.22 -0.11 -10.24 16 12 C 0.05 1.79 11.97 85.25 1.02 2.81 16 13 N -0.33 -11.84 12.62 -56.80 -0.72 -12.55 16 14 N -0.37 -11.89 4.04 -334.11 -1.35 -13.24 16 15 C 0.10 3.42 6.59 41.28 0.27 3.69 16 16 C -0.06 -1.67 6.06 30.05 0.18 -1.48 16 17 C -0.12 -2.16 5.97 30.79 0.18 -1.98 16 18 C -0.13 -2.19 5.93 30.73 0.18 -2.01 16 19 C 0.12 2.58 7.28 86.44 0.63 3.21 16 20 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 21 H 0.37 21.45 7.66 -92.71 -0.71 20.74 16 22 H 0.03 1.14 8.09 -2.38 -0.02 1.12 16 23 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.19 6.17 8.06 -2.91 -0.02 6.15 16 25 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 26 H 0.09 2.55 8.09 -2.38 -0.02 2.53 16 27 H 0.08 1.29 8.12 -2.38 -0.02 1.27 16 28 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.13 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.06 1.26 8.12 -2.39 -0.02 1.24 16 31 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -70.71 270.58 2.93 -67.78 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.40 Total: 23.50 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 4.22 Total: -12.39 kcal Atomic # 7 Polarization: -123.89 SS G_CDS: -3.72 Total: -127.61 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -70.71 2.93 -67.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067932.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.482 kcal (2) G-P(sol) polarization free energy of solvation -70.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds