Wall clock time and date at job start Mon Mar 30 2020 02:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.39673 * 111.00219 * 123.95459 * 2 1 3 5 5 C 1.38927 * 120.07353 * 299.72177 * 4 2 1 6 6 C 1.38091 * 119.92381 * 179.78743 * 5 4 2 7 7 C 1.38305 * 120.07039 * 0.49415 * 6 5 4 8 8 C 1.38257 * 120.15329 * 359.74092 * 7 6 5 9 9 C 1.38128 * 120.07473 * 0.02562 * 8 7 6 10 10 C 1.50698 * 120.03793 * 180.02562 * 9 8 7 11 11 H 1.09004 * 109.47584 * 144.97737 * 10 9 8 12 12 O 1.42910 * 109.47253 * 24.97819 * 10 9 8 13 13 C 1.50700 * 109.47031 * 264.97831 * 10 9 8 14 14 H 1.07996 * 120.00235 * 359.97438 * 13 10 9 15 15 C 1.37882 * 119.99905 * 179.97438 * 13 10 9 16 16 N 1.31511 * 120.00223 * 0.02562 * 15 13 10 17 17 Si 1.86806 * 119.99894 * 179.97438 * 15 13 10 18 18 H 1.48496 * 109.46708 * 60.00217 * 17 15 13 19 19 H 1.48498 * 109.46810 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.46898 * 300.00249 * 17 15 13 21 21 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 22 22 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 23 23 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46703 * 63.95759 * 3 2 1 25 25 H 1.08998 * 109.46913 * 183.95445 * 3 2 1 26 26 H 1.08996 * 109.47095 * 303.95518 * 3 2 1 27 27 H 1.08003 * 120.04134 * 0.02562 * 5 4 2 28 28 H 1.07996 * 119.96250 * 180.25452 * 6 5 4 29 29 H 1.08003 * 119.92268 * 179.76336 * 7 6 5 30 30 H 1.08009 * 119.96406 * 180.02562 * 8 7 6 31 31 H 0.96699 * 113.99740 * 300.00033 * 12 10 9 32 32 H 0.96996 * 120.00468 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9696 -0.7283 1.0816 5 6 1.6627 -0.3446 2.3811 6 6 2.1556 -1.0695 3.4480 7 6 2.9625 -2.1703 3.2243 8 6 3.2739 -2.5520 1.9324 9 6 2.7802 -1.8342 0.8605 10 6 3.1197 -2.2514 -0.5472 11 1 2.2674 -2.0587 -1.1989 12 8 3.4301 -3.6462 -0.5690 13 6 4.3101 -1.4641 -1.0311 14 1 4.7742 -0.7344 -0.3842 15 6 4.8069 -1.6755 -2.2999 16 7 4.2415 -2.5637 -3.0879 17 14 6.2821 -0.6991 -2.9000 18 1 7.4431 -0.9607 -2.0119 19 1 6.6166 -1.1103 -4.2871 20 1 5.9586 0.7500 -2.8781 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.7044 1.8723 0.9233 25 1 3.0827 1.3433 -0.0709 26 1 1.5898 1.9164 -0.8524 27 1 1.0360 0.5174 2.5566 28 1 1.9140 -0.7741 4.4583 29 1 3.3499 -2.7332 4.0606 30 1 3.9039 -3.4124 1.7612 31 1 4.1804 -3.8908 -0.0101 32 1 4.5907 -2.7121 -3.9806 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535731069.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:07 Heat of formation + Delta-G solvation = -12.085801 kcal Electronic energy + Delta-G solvation = -15339.741517 eV Core-core repulsion = 12879.582666 eV Total energy + Delta-G solvation = -2460.158851 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.42841 -36.15398 -35.23726 -32.05419 -30.46224 -29.37416 -27.14777 -26.47649 -24.01004 -23.11420 -20.59603 -20.03874 -16.99702 -16.51655 -15.25072 -15.11187 -14.53124 -14.48186 -13.99644 -13.66043 -13.28862 -12.79690 -12.34547 -12.13611 -11.82546 -11.69300 -11.38755 -11.24823 -10.96098 -10.85902 -10.78690 -10.53546 -10.12007 -9.18121 -8.58835 -8.33492 -8.21315 -7.81078 -7.71038 -5.91120 -4.07021 1.87760 2.06009 3.33718 3.38661 3.40846 4.32113 4.42661 4.51245 5.33410 5.36527 5.46410 5.53758 5.63450 5.69117 5.82848 5.91977 5.99624 6.18091 6.21172 6.32243 6.41495 6.47223 6.68288 6.91011 7.06930 7.13032 7.43886 7.48920 7.86266 7.96307 8.10396 8.26255 8.92734 9.41638 9.65766 11.12822 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026745 B = 0.010854 C = 0.009423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.687097 B = 2578.961100 C = 2970.699827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.491 5.491 3 C 0.038 3.962 4 C 0.085 3.915 5 C -0.154 4.154 6 C -0.140 4.140 7 C -0.125 4.125 8 C -0.119 4.119 9 C -0.045 4.045 10 C 0.265 3.735 11 H 0.083 0.917 12 O -0.564 6.564 13 C -0.544 4.544 14 H 0.051 0.949 15 C 0.080 3.920 16 N -0.861 5.861 17 Si 0.888 3.112 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.277 1.277 21 H 0.068 0.932 22 H 0.020 0.980 23 H 0.066 0.934 24 H 0.017 0.983 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.342 0.658 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.478 4.422 8.937 10.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.211 5.211 3 C -0.109 4.109 4 C -0.009 4.009 5 C -0.174 4.174 6 C -0.159 4.159 7 C -0.143 4.143 8 C -0.138 4.138 9 C -0.046 4.046 10 C 0.208 3.792 11 H 0.101 0.899 12 O -0.368 6.368 13 C -0.582 4.582 14 H 0.069 0.931 15 C -0.125 4.125 16 N -0.497 5.497 17 Si 0.715 3.285 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 H 0.086 0.914 22 H 0.038 0.962 23 H 0.085 0.915 24 H 0.036 0.964 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.139 0.861 31 H 0.186 0.814 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.856 4.114 7.867 10.119 hybrid contribution 1.023 1.158 0.824 1.751 sum -3.833 5.272 8.691 10.864 Atomic orbital electron populations 1.22409 0.87207 1.02066 0.99918 1.59354 1.06887 1.13637 1.41267 1.22347 1.01898 0.87434 0.99220 1.18572 0.98547 0.95827 0.87963 1.21490 1.01968 1.00296 0.93633 1.20739 1.00400 0.97004 0.97768 1.21030 0.99153 0.97382 0.96736 1.20924 1.00588 1.00449 0.91831 1.21413 0.91512 0.92068 0.99618 1.18437 0.96676 0.78797 0.85330 0.89936 1.86646 1.52122 1.27227 1.70772 1.21310 1.14316 1.23020 0.99529 0.93069 1.24985 0.96587 0.94531 0.96438 1.70058 1.39753 1.31988 1.07896 0.86762 0.83307 0.80610 0.77810 1.20314 1.21294 1.20234 0.91353 0.96179 0.91476 0.96429 0.90604 0.91564 0.87418 0.87259 0.86960 0.86051 0.81353 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.28 60.07 0.56 1.05 16 2 N -0.49 -9.49 4.03 -186.85 -0.75 -10.24 16 3 C 0.04 0.65 9.38 60.07 0.56 1.21 16 4 C 0.08 1.69 4.70 -83.79 -0.39 1.30 16 5 C -0.15 -2.64 8.61 -39.38 -0.34 -2.98 16 6 C -0.14 -2.24 10.04 -39.61 -0.40 -2.63 16 7 C -0.12 -2.06 10.04 -39.55 -0.40 -2.46 16 8 C -0.12 -2.31 9.30 -39.61 -0.37 -2.68 16 9 C -0.04 -0.99 5.02 -104.42 -0.52 -1.51 16 10 C 0.26 6.87 2.76 -29.04 -0.08 6.79 16 11 H 0.08 2.39 7.63 -51.93 -0.40 2.00 16 12 O -0.56 -14.77 12.38 -35.23 -0.44 -15.21 16 13 C -0.54 -14.99 8.75 -34.44 -0.30 -15.29 16 14 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 15 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 16 N -0.86 -25.55 12.84 55.43 0.71 -24.84 16 17 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.02 0.28 7.28 -51.93 -0.38 -0.10 16 23 H 0.07 1.09 8.13 -51.93 -0.42 0.67 16 24 H 0.02 0.26 7.33 -51.93 -0.38 -0.12 16 25 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.11 1.63 7.05 -52.48 -0.37 1.26 16 28 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 30 H 0.12 2.20 6.41 -52.48 -0.34 1.86 16 31 H 0.34 7.85 7.32 45.56 0.33 8.19 16 32 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 LS Contribution 271.11 15.07 4.09 4.09 Total: -1.00 -30.95 271.11 -6.79 -37.75 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -3.60 Total: 7.12 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -1.78 Total: -15.05 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: -0.04 Total: -35.08 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.44 Total: -15.21 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.95 -6.79 -37.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535731069.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.660 kcal (2) G-P(sol) polarization free energy of solvation -30.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds