Wall clock time and date at job start Mon Mar 30 2020 02:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.39673 * 111.00219 * 123.95459 * 2 1 3 5 5 C 1.38927 * 120.07353 * 299.72177 * 4 2 1 6 6 C 1.38091 * 119.92381 * 179.78743 * 5 4 2 7 7 C 1.38305 * 120.07039 * 0.49415 * 6 5 4 8 8 C 1.38257 * 120.15329 * 359.74092 * 7 6 5 9 9 C 1.38128 * 120.07473 * 0.02562 * 8 7 6 10 10 C 1.50698 * 120.03793 * 180.02562 * 9 8 7 11 11 H 1.09004 * 109.47584 * 144.97737 * 10 9 8 12 12 O 1.42910 * 109.47253 * 24.97819 * 10 9 8 13 13 C 1.50700 * 109.47031 * 264.97831 * 10 9 8 14 14 H 1.07996 * 120.00235 * 359.97438 * 13 10 9 15 15 C 1.37882 * 119.99905 * 179.97438 * 13 10 9 16 16 N 1.31511 * 120.00223 * 0.02562 * 15 13 10 17 17 Si 1.86806 * 119.99894 * 179.97438 * 15 13 10 18 18 H 1.48496 * 109.46708 * 60.00217 * 17 15 13 19 19 H 1.48498 * 109.46810 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.46898 * 300.00249 * 17 15 13 21 21 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 22 22 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 23 23 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46703 * 63.95759 * 3 2 1 25 25 H 1.08998 * 109.46913 * 183.95445 * 3 2 1 26 26 H 1.08996 * 109.47095 * 303.95518 * 3 2 1 27 27 H 1.08003 * 120.04134 * 0.02562 * 5 4 2 28 28 H 1.07996 * 119.96250 * 180.25452 * 6 5 4 29 29 H 1.08003 * 119.92268 * 179.76336 * 7 6 5 30 30 H 1.08009 * 119.96406 * 180.02562 * 8 7 6 31 31 H 0.96699 * 113.99740 * 300.00033 * 12 10 9 32 32 H 0.96996 * 120.00468 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9696 -0.7283 1.0816 5 6 1.6627 -0.3446 2.3811 6 6 2.1556 -1.0695 3.4480 7 6 2.9625 -2.1703 3.2243 8 6 3.2739 -2.5520 1.9324 9 6 2.7802 -1.8342 0.8605 10 6 3.1197 -2.2514 -0.5472 11 1 2.2674 -2.0587 -1.1989 12 8 3.4301 -3.6462 -0.5690 13 6 4.3101 -1.4641 -1.0311 14 1 4.7742 -0.7344 -0.3842 15 6 4.8069 -1.6755 -2.2999 16 7 4.2415 -2.5637 -3.0879 17 14 6.2821 -0.6991 -2.9000 18 1 7.4431 -0.9607 -2.0119 19 1 6.6166 -1.1103 -4.2871 20 1 5.9586 0.7500 -2.8781 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.7044 1.8723 0.9233 25 1 3.0827 1.3433 -0.0709 26 1 1.5898 1.9164 -0.8524 27 1 1.0360 0.5174 2.5566 28 1 1.9140 -0.7741 4.4583 29 1 3.3499 -2.7332 4.0606 30 1 3.9039 -3.4124 1.7612 31 1 4.1804 -3.8908 -0.0101 32 1 4.5907 -2.7121 -3.9806 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535731069.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:07 Heat of formation + Delta-G solvation = -33.541679 kcal Electronic energy + Delta-G solvation = -15340.671914 eV Core-core repulsion = 12879.582666 eV Total energy + Delta-G solvation = -2461.089247 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.86467 -37.77458 -36.92415 -34.21104 -32.06141 -30.74743 -28.51490 -28.36287 -25.39512 -24.93122 -22.11600 -21.53386 -19.04601 -18.04942 -16.78171 -16.65642 -16.55866 -15.84590 -15.64694 -15.02069 -14.80727 -14.55775 -14.10015 -13.52300 -13.33254 -13.14034 -13.02358 -12.77842 -12.77000 -12.57579 -12.45946 -12.05751 -11.92023 -11.15985 -10.68574 -10.31346 -9.60867 -9.28163 -9.17079 -8.04926 -6.28440 0.50462 0.63898 1.40587 1.42197 1.50158 2.42528 2.96122 3.10395 3.19321 4.09717 4.16343 4.27320 4.32073 4.40336 4.41487 4.55326 4.64314 4.72174 4.83184 4.94121 4.97423 5.03423 5.20524 5.47141 5.60377 5.67513 5.72774 5.98992 6.11366 6.16567 6.18377 6.67184 6.79075 7.37528 7.56974 8.98399 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026745 B = 0.010854 C = 0.009423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.687097 B = 2578.961100 C = 2970.699827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.528 5.528 3 C 0.043 3.957 4 C 0.073 3.927 5 C -0.154 4.154 6 C -0.127 4.127 7 C -0.121 4.121 8 C -0.132 4.132 9 C -0.086 4.086 10 C 0.273 3.727 11 H 0.039 0.961 12 O -0.582 6.582 13 C -0.546 4.546 14 H 0.045 0.955 15 C 0.028 3.972 16 N -0.901 5.901 17 Si 0.954 3.046 18 H -0.269 1.269 19 H -0.284 1.284 20 H -0.270 1.270 21 H 0.079 0.921 22 H 0.044 0.956 23 H 0.052 0.948 24 H 0.042 0.958 25 H 0.047 0.953 26 H 0.079 0.921 27 H 0.133 0.867 28 H 0.151 0.849 29 H 0.148 0.852 30 H 0.122 0.878 31 H 0.354 0.646 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.476 5.791 11.244 13.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.249 5.249 3 C -0.104 4.104 4 C -0.020 4.020 5 C -0.174 4.174 6 C -0.145 4.145 7 C -0.139 4.139 8 C -0.150 4.150 9 C -0.087 4.087 10 C 0.216 3.784 11 H 0.056 0.944 12 O -0.387 6.387 13 C -0.584 4.584 14 H 0.063 0.937 15 C -0.174 4.174 16 N -0.539 5.539 17 Si 0.779 3.221 18 H -0.194 1.194 19 H -0.210 1.210 20 H -0.196 1.196 21 H 0.098 0.902 22 H 0.063 0.937 23 H 0.071 0.929 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.097 0.903 27 H 0.151 0.849 28 H 0.169 0.831 29 H 0.166 0.834 30 H 0.140 0.860 31 H 0.199 0.801 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.854 5.494 10.193 12.555 hybrid contribution 0.959 0.720 0.197 1.215 sum -3.895 6.214 10.390 12.717 Atomic orbital electron populations 1.22402 0.85390 1.01721 1.01656 1.59264 1.08784 1.14690 1.42139 1.22293 1.00098 0.86913 1.01090 1.18730 0.98391 0.95399 0.89512 1.21734 1.01991 1.01120 0.92532 1.21255 0.98277 0.95626 0.99345 1.21395 0.98547 0.97686 0.96264 1.21068 1.00851 1.00417 0.92698 1.21130 0.94965 0.94718 0.97931 1.18002 0.94539 0.78276 0.87589 0.94373 1.86561 1.52845 1.27744 1.71541 1.21543 1.14761 1.22592 0.99539 0.93688 1.25799 0.99454 0.95499 0.96632 1.70201 1.41552 1.33913 1.08233 0.85709 0.79887 0.79236 0.77302 1.19425 1.20960 1.19552 0.90187 0.93713 0.92882 0.93928 0.93432 0.90273 0.84905 0.83134 0.83385 0.85981 0.80059 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.07 9.28 127.69 1.19 2.26 16 2 N -0.53 -20.34 4.03 -745.08 -3.00 -23.34 16 3 C 0.04 1.41 9.38 127.69 1.20 2.61 16 4 C 0.07 2.89 4.70 38.21 0.18 3.07 16 5 C -0.15 -4.81 8.61 22.40 0.19 -4.61 16 6 C -0.13 -3.48 10.04 22.25 0.22 -3.26 16 7 C -0.12 -3.60 10.04 22.29 0.22 -3.38 16 8 C -0.13 -5.01 9.30 22.25 0.21 -4.80 16 9 C -0.09 -3.86 5.02 -19.74 -0.10 -3.96 16 10 C 0.27 14.79 2.76 29.10 0.08 14.87 16 11 H 0.04 2.37 7.63 -2.38 -0.02 2.35 16 12 O -0.58 -31.77 12.38 -148.98 -1.84 -33.62 16 13 C -0.55 -31.03 8.75 25.60 0.22 -30.80 16 14 H 0.04 2.55 7.74 -2.91 -0.02 2.53 16 15 C 0.03 1.59 5.40 84.66 0.46 2.05 16 16 N -0.90 -55.25 12.84 21.45 0.28 -54.97 16 17 Si 0.95 44.62 29.54 68.60 2.03 46.65 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 21 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 22 H 0.04 1.13 7.28 -2.39 -0.02 1.11 16 23 H 0.05 1.74 8.13 -2.38 -0.02 1.72 16 24 H 0.04 1.17 7.33 -2.39 -0.02 1.15 16 25 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.13 3.44 7.05 -2.91 -0.02 3.42 16 28 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 29 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 30 H 0.12 4.42 6.41 -2.91 -0.02 4.41 16 31 H 0.35 16.89 7.32 -74.06 -0.54 16.35 16 32 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -68.81 271.11 2.10 -66.71 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.57 Total: 24.52 kcal Atomic # 6 Polarization: -30.02 SS G_CDS: 4.07 Total: -25.95 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -2.73 Total: -78.32 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -1.84 Total: -33.62 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -68.81 2.10 -66.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535731069.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.171 kcal (2) G-P(sol) polarization free energy of solvation -68.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds