Wall clock time and date at job start Mon Mar 30 2020 02:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46492 * 120.00431 * 2 1 4 4 C 1.39678 * 119.99793 * 180.02562 * 2 1 3 5 5 C 1.38931 * 120.07440 * 180.02562 * 4 2 1 6 6 C 1.38082 * 119.92585 * 179.97438 * 5 4 2 7 7 C 1.38306 * 120.07618 * 359.72986 * 6 5 4 8 8 C 1.38271 * 120.14510 * 0.54278 * 7 6 5 9 9 C 1.50701 * 119.96065 * 179.72687 * 8 7 6 10 10 H 1.09002 * 109.47060 * 159.72987 * 9 8 7 11 11 O 1.42903 * 109.46878 * 39.72856 * 9 8 7 12 12 C 1.50699 * 109.47269 * 279.72840 * 9 8 7 13 13 H 1.08000 * 119.99792 * 0.02562 * 12 9 8 14 14 C 1.37878 * 119.99902 * 179.97438 * 12 9 8 15 15 N 1.31515 * 120.00126 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99745 * 180.02562 * 14 12 9 17 17 H 1.48496 * 109.47319 * 60.00570 * 16 14 12 18 18 H 1.48503 * 109.46734 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47266 * 300.00384 * 16 14 12 20 20 C 1.38123 * 120.07550 * 359.45720 * 8 7 6 21 21 H 1.09004 * 109.46706 * 239.99416 * 1 2 3 22 22 H 1.08998 * 109.47067 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47622 * 119.99703 * 1 2 3 24 24 H 1.09001 * 109.47814 * 270.00848 * 3 2 1 25 25 H 1.09008 * 109.46880 * 30.00405 * 3 2 1 26 26 H 1.09000 * 109.47564 * 150.00355 * 3 2 1 27 27 H 1.08000 * 120.03874 * 0.02562 * 5 4 2 28 28 H 1.08001 * 119.96493 * 179.97438 * 6 5 4 29 29 H 1.07992 * 119.93217 * 180.29278 * 7 6 5 30 30 H 0.96700 * 114.00234 * 299.99722 * 11 9 8 31 31 H 0.96999 * 120.00073 * 179.97438 * 15 14 12 32 32 H 1.07996 * 120.03567 * 180.29243 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1633 -1.2097 -0.0005 5 6 3.5526 -1.2115 0.0000 6 6 4.2399 -2.4092 0.0000 7 6 3.5468 -3.6060 0.0051 8 6 2.1641 -3.6078 -0.0011 9 6 1.4132 -4.9144 -0.0017 10 1 0.3947 -4.7482 0.3494 11 8 2.0703 -5.8418 0.8643 12 6 1.3773 -5.4725 -1.4011 13 1 1.8513 -4.9350 -2.2091 14 6 0.7403 -6.6698 -1.6496 15 7 0.1635 -7.3245 -0.6655 16 14 0.6964 -7.3619 -3.3841 17 1 2.0840 -7.5880 -3.8621 18 1 -0.0437 -8.6494 -3.3847 19 1 0.0135 -6.3984 -4.2845 20 6 1.4704 -2.4134 -0.0011 21 1 -0.3633 -0.5140 0.8900 22 1 -0.3633 1.0276 0.0005 23 1 -0.3634 -0.5138 -0.8900 24 1 2.3792 1.5834 -1.0276 25 1 1.6085 2.0283 0.5139 26 1 3.1500 1.1383 0.5138 27 1 4.0945 -0.2773 0.0013 28 1 5.3199 -2.4113 0.0000 29 1 4.0867 -4.5413 0.0099 30 1 2.9830 -6.0372 0.6116 31 1 -0.2850 -8.1666 -0.8405 32 1 0.3905 -2.4155 -0.0012 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535863851.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:12 Heat of formation + Delta-G solvation = -39.122480 kcal Electronic energy + Delta-G solvation = -14800.399248 eV Core-core repulsion = 12339.067998 eV Total energy + Delta-G solvation = -2461.331249 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.54594 -38.09173 -36.36608 -34.30104 -32.33901 -30.77572 -29.36488 -28.17201 -25.64172 -24.75700 -22.54294 -20.96597 -19.10656 -18.29204 -16.76583 -16.65269 -16.32279 -16.27946 -15.87223 -15.20396 -14.93474 -14.44019 -13.94423 -13.64849 -13.46006 -13.36191 -13.03536 -12.90656 -12.80524 -12.76145 -12.20481 -12.11914 -11.95660 -11.18131 -10.77223 -10.55503 -10.30281 -9.48688 -8.17305 -8.08129 -6.42150 0.67617 0.82985 1.39226 1.41368 1.50043 2.32625 2.38449 3.06428 3.14245 4.04311 4.15366 4.23287 4.30990 4.44786 4.47637 4.54100 4.69813 4.76283 4.83375 4.87964 4.92565 4.96164 5.24917 5.37236 5.48570 5.62532 5.74221 5.98470 6.06533 6.18055 6.46125 6.65566 6.68259 7.28481 7.47578 8.88619 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034123 B = 0.007564 C = 0.007093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.353347 B = 3700.882395 C = 3946.335885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.648 5.648 3 C 0.092 3.908 4 C 0.205 3.795 5 C -0.213 4.213 6 C -0.071 4.071 7 C -0.188 4.188 8 C -0.052 4.052 9 C 0.260 3.740 10 H 0.025 0.975 11 O -0.576 6.576 12 C -0.573 4.573 13 H 0.053 0.947 14 C 0.026 3.974 15 N -0.900 5.900 16 Si 0.963 3.037 17 H -0.266 1.266 18 H -0.280 1.280 19 H -0.270 1.270 20 C -0.214 4.214 21 H 0.043 0.957 22 H 0.103 0.897 23 H 0.040 0.960 24 H 0.051 0.949 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.147 0.853 28 H 0.148 0.852 29 H 0.114 0.886 30 H 0.358 0.642 31 H 0.264 0.736 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.061 15.531 0.082 16.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.361 5.361 3 C -0.050 4.050 4 C 0.104 3.896 5 C -0.235 4.235 6 C -0.089 4.089 7 C -0.208 4.208 8 C -0.053 4.053 9 C 0.203 3.797 10 H 0.043 0.957 11 O -0.381 6.381 12 C -0.611 4.611 13 H 0.072 0.928 14 C -0.176 4.176 15 N -0.537 5.537 16 Si 0.787 3.213 17 H -0.190 1.190 18 H -0.205 1.205 19 H -0.195 1.195 20 C -0.237 4.237 21 H 0.062 0.938 22 H 0.121 0.879 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.104 0.896 26 H 0.092 0.908 27 H 0.165 0.835 28 H 0.166 0.834 29 H 0.132 0.868 30 H 0.204 0.796 31 H 0.073 0.927 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.261 15.592 0.453 16.170 hybrid contribution -0.037 -0.840 -1.041 1.338 sum 4.224 14.752 -0.588 15.356 Atomic orbital electron populations 1.21647 0.79167 1.03557 1.00475 1.46515 1.05523 1.03209 1.80806 1.21811 0.97679 0.83834 1.01686 1.17899 0.91955 0.85636 0.94140 1.20848 0.91505 0.99288 1.11907 1.21130 1.00445 0.91129 0.96204 1.20780 0.93152 0.98835 1.08046 1.20804 0.95352 0.95780 0.93339 1.18217 0.89910 0.82517 0.89075 0.95679 1.86515 1.29525 1.66573 1.55488 1.21771 1.37668 1.07115 0.94506 0.92847 1.25930 0.93620 0.96927 1.01124 1.70204 1.34576 1.15540 1.33350 0.85566 0.78764 0.77564 0.79426 1.19047 1.20480 1.19525 1.20462 0.99081 0.91416 1.12703 0.93816 0.87873 0.94146 0.93064 0.89555 0.90842 0.83515 0.83382 0.86818 0.79647 0.92719 0.87825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.27 9.40 127.77 1.20 3.47 16 2 N -0.65 -17.57 3.41 -747.28 -2.55 -20.12 16 3 C 0.09 1.65 10.16 127.77 1.30 2.95 16 4 C 0.21 7.11 6.55 38.21 0.25 7.36 16 5 C -0.21 -6.54 9.21 22.40 0.21 -6.33 16 6 C -0.07 -2.28 10.04 22.25 0.22 -2.06 16 7 C -0.19 -7.60 9.32 22.29 0.21 -7.39 16 8 C -0.05 -2.42 4.91 -19.88 -0.10 -2.51 16 9 C 0.26 14.43 3.07 29.10 0.09 14.52 16 10 H 0.03 1.56 8.00 -2.39 -0.02 1.54 16 11 O -0.58 -31.99 12.58 -148.98 -1.87 -33.86 16 12 C -0.57 -33.18 8.74 25.60 0.22 -32.96 16 13 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 14 C 0.03 1.52 5.40 84.65 0.46 1.98 16 15 N -0.90 -55.10 12.84 21.45 0.28 -54.82 16 16 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 20 C -0.21 -9.08 8.93 22.40 0.20 -8.88 16 21 H 0.04 1.12 7.95 -2.39 -0.02 1.10 16 22 H 0.10 1.67 7.79 -2.39 -0.02 1.65 16 23 H 0.04 1.07 7.95 -2.39 -0.02 1.05 16 24 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.09 1.12 7.92 -2.38 -0.02 1.10 16 26 H 0.07 1.22 6.20 -2.39 -0.01 1.20 16 27 H 0.15 3.40 6.14 -2.91 -0.02 3.38 16 28 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 29 H 0.11 4.43 6.77 -2.91 -0.02 4.41 16 30 H 0.36 17.46 7.48 -74.06 -0.55 16.91 16 31 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 32 H 0.10 4.46 6.71 -2.91 -0.02 4.44 16 Total: -1.00 -70.50 270.56 2.70 -67.80 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.56 Total: 24.31 kcal Atomic # 6 Polarization: -34.11 SS G_CDS: 4.26 Total: -29.85 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: -2.27 Total: -74.94 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -1.87 Total: -33.86 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -70.50 2.70 -67.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535863851.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.677 kcal (2) G-P(sol) polarization free energy of solvation -70.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds