Wall clock time and date at job start Mon Mar 30 2020 02:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46496 * 120.00509 * 2 1 4 4 C 1.39686 * 119.99913 * 180.02562 * 2 1 3 5 5 C 1.38933 * 120.06987 * 354.29835 * 4 2 1 6 6 C 1.38083 * 119.91778 * 180.02562 * 5 4 2 7 7 C 1.38300 * 120.08031 * 359.97438 * 6 5 4 8 8 C 1.38266 * 120.14834 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.96453 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.47176 * 205.00042 * 9 8 7 11 11 O 1.42903 * 109.47139 * 324.99909 * 9 8 7 12 12 C 1.50699 * 109.47357 * 84.99761 * 9 8 7 13 13 H 1.08003 * 119.99645 * 359.97438 * 12 9 8 14 14 C 1.37875 * 120.00465 * 180.02562 * 12 9 8 15 15 N 1.31525 * 119.99632 * 0.02562 * 14 12 9 16 16 Si 1.86797 * 120.00452 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47168 * 180.02562 * 16 14 12 18 18 H 1.48498 * 109.47179 * 59.99940 * 16 14 12 19 19 H 1.48504 * 109.46869 * 299.99784 * 16 14 12 20 20 C 1.38122 * 120.07320 * 0.29155 * 8 7 6 21 21 H 1.09002 * 109.47350 * 269.99971 * 1 2 3 22 22 H 1.08996 * 109.47601 * 29.99787 * 1 2 3 23 23 H 1.09005 * 109.47576 * 150.00348 * 1 2 3 24 24 H 1.08998 * 109.47633 * 185.07637 * 3 2 1 25 25 H 1.09005 * 109.47218 * 305.07442 * 3 2 1 26 26 H 1.08997 * 109.47159 * 65.06648 * 3 2 1 27 27 H 1.07993 * 120.04026 * 359.97438 * 5 4 2 28 28 H 1.08004 * 119.96104 * 179.97438 * 6 5 4 29 29 H 1.07998 * 119.93180 * 180.02562 * 7 6 5 30 30 H 0.96700 * 113.99797 * 60.00138 * 11 9 8 31 31 H 0.96996 * 119.99814 * 0.02562 * 15 14 12 32 32 H 1.08001 * 120.03687 * 179.72807 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1633 -1.2097 -0.0005 5 6 1.4753 -2.4108 0.1184 6 6 2.1689 -3.6048 0.1180 7 6 3.5467 -3.6060 -0.0011 8 6 4.2345 -2.4125 -0.1207 9 6 5.7358 -2.4187 -0.2507 10 1 6.1351 -1.4683 0.1034 11 8 6.2774 -3.4843 0.5323 12 6 6.1140 -2.6151 -1.6962 13 1 5.3442 -2.7249 -2.4457 14 6 7.4428 -2.6556 -2.0618 15 7 8.3803 -2.5234 -1.1489 16 14 7.9116 -2.8984 -3.8537 17 1 9.3911 -2.9058 -3.9816 18 1 7.3495 -1.7903 -4.6669 19 1 7.3670 -4.1927 -4.3368 20 6 3.5474 -1.2143 -0.1155 21 1 -0.3634 0.0000 1.0277 22 1 -0.3634 0.8899 -0.5138 23 1 -0.3634 -0.8900 -0.5138 24 1 3.2657 1.0715 -0.0909 25 1 1.8678 1.8786 -0.8411 26 1 2.0041 1.7999 0.9319 27 1 0.3994 -2.4106 0.2118 28 1 1.6347 -4.5389 0.2108 29 1 4.0868 -4.5413 -0.0015 30 1 5.9649 -4.3617 0.2722 31 1 8.1369 -2.3977 -0.2184 32 1 4.0856 -0.2822 -0.2045 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535863852.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:15 Heat of formation + Delta-G solvation = -20.140483 kcal Electronic energy + Delta-G solvation = -14847.254749 eV Core-core repulsion = 12386.746621 eV Total energy + Delta-G solvation = -2460.508128 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.22946 -36.67142 -34.99580 -32.14236 -30.91018 -29.45747 -28.20583 -25.94488 -24.45181 -22.85091 -21.19453 -19.69176 -17.26138 -17.17595 -15.48631 -15.03349 -14.98018 -14.88798 -13.81003 -13.75963 -13.49012 -12.92962 -12.52422 -12.49958 -12.29546 -12.08325 -11.76774 -11.62571 -10.90796 -10.76594 -10.59684 -10.12991 -10.11056 -9.50987 -9.30030 -8.54817 -8.35131 -7.81220 -6.88366 -6.34819 -4.19198 2.07799 2.21884 3.37983 3.43394 3.44458 3.63894 4.44659 4.58391 5.08286 5.17731 5.33978 5.34791 5.48520 5.52916 5.66566 5.70496 5.75109 5.90205 6.03462 6.11623 6.19565 6.26366 6.61207 6.78707 7.05309 7.12510 7.36788 7.56941 7.69621 7.90266 7.99330 8.37159 8.85100 9.07244 9.65290 11.03689 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.033095 B = 0.007713 C = 0.007155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.846084 B = 3629.401440 C = 3912.372039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.645 5.645 3 C 0.091 3.909 4 C 0.206 3.794 5 C -0.218 4.218 6 C -0.078 4.078 7 C -0.170 4.170 8 C -0.018 4.018 9 C 0.241 3.759 10 H 0.059 0.941 11 O -0.578 6.578 12 C -0.637 4.637 13 H 0.051 0.949 14 C 0.035 3.965 15 N -0.892 5.892 16 Si 1.068 2.932 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.287 1.287 20 C -0.195 4.195 21 H 0.041 0.959 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.355 0.645 31 H 0.284 0.716 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.652 3.406 1.687 14.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.359 5.359 3 C -0.052 4.052 4 C 0.107 3.893 5 C -0.241 4.241 6 C -0.097 4.097 7 C -0.189 4.189 8 C -0.019 4.019 9 C 0.184 3.816 10 H 0.076 0.924 11 O -0.383 6.383 12 C -0.675 4.675 13 H 0.070 0.930 14 C -0.174 4.174 15 N -0.526 5.526 16 Si 0.896 3.104 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.213 1.213 20 C -0.217 4.217 21 H 0.059 0.941 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.100 0.900 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.201 0.799 31 H 0.096 0.904 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.147 3.949 0.984 12.810 hybrid contribution -1.814 -0.192 0.629 1.930 sum -13.961 3.757 1.612 14.547 Atomic orbital electron populations 1.21480 0.80274 1.02062 1.00487 1.46173 1.04456 1.03252 1.82018 1.21641 0.98382 0.85006 1.00162 1.17785 0.91224 0.85306 0.94954 1.20415 0.98717 0.91401 1.13523 1.20754 0.94194 0.96633 0.98120 1.20662 0.93616 0.97909 1.06739 1.20889 0.98911 0.91988 0.90137 1.18668 0.83391 0.87902 0.91657 0.92366 1.86507 1.72829 1.17288 1.61673 1.22330 0.94882 1.58004 0.92298 0.93025 1.25832 0.92522 0.92979 1.06076 1.70643 1.35739 1.42073 1.04182 0.83584 0.76179 0.76587 0.74080 1.20691 1.21432 1.21345 1.20527 0.91660 0.98561 1.10914 0.94088 0.92158 0.91643 0.90047 0.93145 0.93594 0.87082 0.87000 0.86862 0.79888 0.90431 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.13 10.10 59.84 0.60 1.73 16 2 N -0.64 -9.58 3.41 -187.55 -0.64 -10.22 16 3 C 0.09 1.17 10.62 59.84 0.64 1.80 16 4 C 0.21 3.72 6.54 -83.78 -0.55 3.17 16 5 C -0.22 -3.69 9.16 -39.38 -0.36 -4.05 16 6 C -0.08 -1.37 10.04 -39.62 -0.40 -1.76 16 7 C -0.17 -3.44 9.32 -39.55 -0.37 -3.80 16 8 C -0.02 -0.41 4.94 -104.65 -0.52 -0.93 16 9 C 0.24 6.26 2.67 -29.04 -0.08 6.19 16 10 H 0.06 1.61 7.92 -51.93 -0.41 1.20 16 11 O -0.58 -14.90 11.81 -35.23 -0.42 -15.31 16 12 C -0.64 -18.01 8.75 -34.44 -0.30 -18.31 16 13 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 14 C 0.03 0.99 5.40 -17.82 -0.10 0.90 16 15 N -0.89 -27.22 13.53 55.43 0.75 -26.47 16 16 Si 1.07 25.20 29.90 -169.99 -5.08 20.11 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 20 C -0.19 -4.01 8.94 -39.38 -0.35 -4.36 16 21 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.06 0.56 8.07 -51.93 -0.42 0.14 16 23 H 0.06 0.71 6.45 -51.93 -0.34 0.38 16 24 H 0.08 1.14 5.31 -51.93 -0.28 0.86 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.11 1.57 6.31 -52.49 -0.33 1.24 16 28 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 29 H 0.11 2.19 6.61 -52.49 -0.35 1.84 16 30 H 0.35 8.18 7.38 45.56 0.34 8.52 16 31 H 0.28 8.81 6.47 -40.82 -0.26 8.55 16 32 H 0.12 2.36 5.74 -52.49 -0.30 2.06 16 LS Contribution 266.93 15.07 4.02 4.02 Total: -1.00 -32.08 266.93 -6.39 -38.47 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -3.24 Total: 8.83 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -1.78 Total: -19.43 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.11 Total: -36.69 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.42 Total: -15.31 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.08 Total: 20.11 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -32.08 -6.39 -38.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535863852.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.326 kcal (2) G-P(sol) polarization free energy of solvation -32.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds