Wall clock time and date at job start Mon Mar 30 2020 02:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46496 * 120.00509 * 2 1 4 4 C 1.39686 * 119.99913 * 180.02562 * 2 1 3 5 5 C 1.38933 * 120.06987 * 354.29835 * 4 2 1 6 6 C 1.38083 * 119.91778 * 180.02562 * 5 4 2 7 7 C 1.38300 * 120.08031 * 359.97438 * 6 5 4 8 8 C 1.38266 * 120.14834 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.96453 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.47176 * 205.00042 * 9 8 7 11 11 O 1.42903 * 109.47139 * 324.99909 * 9 8 7 12 12 C 1.50699 * 109.47357 * 84.99761 * 9 8 7 13 13 H 1.08003 * 119.99645 * 359.97438 * 12 9 8 14 14 C 1.37875 * 120.00465 * 180.02562 * 12 9 8 15 15 N 1.31525 * 119.99632 * 0.02562 * 14 12 9 16 16 Si 1.86797 * 120.00452 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47168 * 180.02562 * 16 14 12 18 18 H 1.48498 * 109.47179 * 59.99940 * 16 14 12 19 19 H 1.48504 * 109.46869 * 299.99784 * 16 14 12 20 20 C 1.38122 * 120.07320 * 0.29155 * 8 7 6 21 21 H 1.09002 * 109.47350 * 269.99971 * 1 2 3 22 22 H 1.08996 * 109.47601 * 29.99787 * 1 2 3 23 23 H 1.09005 * 109.47576 * 150.00348 * 1 2 3 24 24 H 1.08998 * 109.47633 * 185.07637 * 3 2 1 25 25 H 1.09005 * 109.47218 * 305.07442 * 3 2 1 26 26 H 1.08997 * 109.47159 * 65.06648 * 3 2 1 27 27 H 1.07993 * 120.04026 * 359.97438 * 5 4 2 28 28 H 1.08004 * 119.96104 * 179.97438 * 6 5 4 29 29 H 1.07998 * 119.93180 * 180.02562 * 7 6 5 30 30 H 0.96700 * 113.99797 * 60.00138 * 11 9 8 31 31 H 0.96996 * 119.99814 * 0.02562 * 15 14 12 32 32 H 1.08001 * 120.03687 * 179.72807 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1633 -1.2097 -0.0005 5 6 1.4753 -2.4108 0.1184 6 6 2.1689 -3.6048 0.1180 7 6 3.5467 -3.6060 -0.0011 8 6 4.2345 -2.4125 -0.1207 9 6 5.7358 -2.4187 -0.2507 10 1 6.1351 -1.4683 0.1034 11 8 6.2774 -3.4843 0.5323 12 6 6.1140 -2.6151 -1.6962 13 1 5.3442 -2.7249 -2.4457 14 6 7.4428 -2.6556 -2.0618 15 7 8.3803 -2.5234 -1.1489 16 14 7.9116 -2.8984 -3.8537 17 1 9.3911 -2.9058 -3.9816 18 1 7.3495 -1.7903 -4.6669 19 1 7.3670 -4.1927 -4.3368 20 6 3.5474 -1.2143 -0.1155 21 1 -0.3634 0.0000 1.0277 22 1 -0.3634 0.8899 -0.5138 23 1 -0.3634 -0.8900 -0.5138 24 1 3.2657 1.0715 -0.0909 25 1 1.8678 1.8786 -0.8411 26 1 2.0041 1.7999 0.9319 27 1 0.3994 -2.4106 0.2118 28 1 1.6347 -4.5389 0.2108 29 1 4.0868 -4.5413 -0.0015 30 1 5.9649 -4.3617 0.2722 31 1 8.1369 -2.3977 -0.2184 32 1 4.0856 -0.2822 -0.2045 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535863852.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:15 Heat of formation + Delta-G solvation = -42.005858 kcal Electronic energy + Delta-G solvation = -14848.202903 eV Core-core repulsion = 12386.746621 eV Total energy + Delta-G solvation = -2461.456282 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.67168 -38.34928 -36.53598 -34.33887 -32.45952 -30.83096 -29.36258 -27.83769 -25.69044 -24.80862 -22.64856 -21.17907 -19.40624 -18.65638 -16.91334 -16.73140 -16.36210 -15.93157 -15.69829 -15.37045 -15.00661 -14.59523 -14.43757 -14.04770 -13.39040 -13.30278 -13.14921 -12.83753 -12.63708 -12.35459 -12.29187 -11.95994 -11.94270 -11.32160 -10.74357 -10.63749 -10.30485 -9.54015 -8.63623 -8.15150 -6.49818 0.59221 0.74782 1.51678 1.59346 1.79864 2.27171 2.54235 3.01140 3.13917 3.92308 3.96134 4.06415 4.20885 4.35447 4.46063 4.50431 4.59857 4.67477 4.76306 4.78182 4.88270 4.91294 5.16739 5.19643 5.38167 5.65507 5.77820 5.94786 6.03826 6.10262 6.39574 6.51727 6.60427 7.08109 7.44909 8.71976 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.033095 B = 0.007713 C = 0.007155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.846084 B = 3629.401440 C = 3912.372039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.648 5.648 3 C 0.086 3.914 4 C 0.209 3.791 5 C -0.212 4.212 6 C -0.068 4.068 7 C -0.191 4.191 8 C -0.048 4.048 9 C 0.243 3.757 10 H 0.025 0.975 11 O -0.588 6.588 12 C -0.643 4.643 13 H 0.045 0.955 14 C -0.016 4.016 15 N -0.918 5.918 16 Si 1.117 2.883 17 H -0.281 1.281 18 H -0.272 1.272 19 H -0.268 1.268 20 C -0.219 4.219 21 H 0.055 0.945 22 H 0.083 0.917 23 H 0.071 0.929 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.148 0.852 28 H 0.150 0.850 29 H 0.113 0.887 30 H 0.365 0.635 31 H 0.267 0.733 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.525 3.333 0.905 16.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.360 5.360 3 C -0.057 4.057 4 C 0.107 3.893 5 C -0.235 4.235 6 C -0.087 4.087 7 C -0.211 4.211 8 C -0.049 4.049 9 C 0.186 3.814 10 H 0.043 0.957 11 O -0.395 6.395 12 C -0.681 4.681 13 H 0.063 0.937 14 C -0.217 4.217 15 N -0.553 5.553 16 Si 0.938 3.062 17 H -0.206 1.206 18 H -0.197 1.197 19 H -0.193 1.193 20 C -0.242 4.242 21 H 0.073 0.927 22 H 0.102 0.898 23 H 0.090 0.910 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.166 0.834 28 H 0.168 0.832 29 H 0.131 0.869 30 H 0.213 0.787 31 H 0.077 0.923 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.068 3.903 0.214 15.566 hybrid contribution -1.069 -0.093 0.946 1.430 sum -16.137 3.810 1.160 16.621 Atomic orbital electron populations 1.21750 0.77689 1.03602 1.01839 1.46500 1.06109 1.02606 1.80822 1.21769 0.97162 0.84739 1.02060 1.17901 0.90343 0.87308 0.93738 1.20853 1.00488 0.90503 1.11609 1.21135 0.92905 0.98629 0.95981 1.20764 0.95248 0.96897 1.08207 1.20596 0.96762 0.94017 0.93507 1.18411 0.86206 0.86453 0.90370 0.95733 1.86436 1.73412 1.17956 1.61671 1.22601 0.94862 1.57194 0.93417 0.93690 1.27374 0.92824 0.91911 1.09641 1.70783 1.36234 1.44646 1.03671 0.82965 0.76027 0.77854 0.69403 1.20639 1.19698 1.19336 1.20534 0.93356 0.97592 1.12687 0.92681 0.89842 0.90993 0.92221 0.91078 0.91668 0.83425 0.83234 0.86891 0.78747 0.92274 0.87322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.70 10.10 127.77 1.29 2.99 16 2 N -0.65 -17.54 3.41 -747.30 -2.55 -20.09 16 3 C 0.09 2.05 10.62 127.77 1.36 3.41 16 4 C 0.21 7.18 6.54 38.21 0.25 7.43 16 5 C -0.21 -6.46 9.16 22.40 0.21 -6.26 16 6 C -0.07 -2.19 10.04 22.25 0.22 -1.97 16 7 C -0.19 -7.70 9.32 22.29 0.21 -7.49 16 8 C -0.05 -2.22 4.94 -19.89 -0.10 -2.32 16 9 C 0.24 13.29 2.67 29.10 0.08 13.37 16 10 H 0.02 1.49 7.92 -2.39 -0.02 1.47 16 11 O -0.59 -31.77 11.81 -148.98 -1.76 -33.53 16 12 C -0.64 -37.49 8.75 25.60 0.22 -37.26 16 13 H 0.04 2.62 7.74 -2.91 -0.02 2.60 16 14 C -0.02 -0.92 5.40 84.65 0.46 -0.46 16 15 N -0.92 -57.87 13.53 21.45 0.29 -57.58 16 16 Si 1.12 50.87 29.90 68.60 2.05 52.92 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 19 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 20 C -0.22 -9.23 8.94 22.40 0.20 -9.03 16 21 H 0.05 0.88 8.14 -2.39 -0.02 0.87 16 22 H 0.08 1.16 8.07 -2.39 -0.02 1.14 16 23 H 0.07 1.23 6.45 -2.38 -0.02 1.22 16 24 H 0.06 1.70 5.31 -2.39 -0.01 1.68 16 25 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.15 3.40 6.31 -2.91 -0.02 3.38 16 28 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 29 H 0.11 4.39 6.61 -2.91 -0.02 4.37 16 30 H 0.37 17.53 7.38 -74.06 -0.55 16.99 16 31 H 0.27 17.41 6.47 -92.71 -0.60 16.81 16 32 H 0.11 4.61 5.74 -2.91 -0.02 4.60 16 Total: -1.00 -71.16 266.93 3.18 -67.98 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 0.75 Total: 27.90 kcal Atomic # 6 Polarization: -42.00 SS G_CDS: 4.40 Total: -37.61 kcal Atomic # 7 Polarization: -75.41 SS G_CDS: -2.26 Total: -77.67 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -1.76 Total: -33.53 kcal Atomic # 14 Polarization: 50.87 SS G_CDS: 2.05 Total: 52.92 kcal Total: -71.16 3.18 -67.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535863852.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.978 kcal (2) G-P(sol) polarization free energy of solvation -71.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds