Wall clock time and date at job start Mon Mar 30 2020 02:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31807 * 119.12505 * 2 1 4 4 C 1.32316 * 120.82386 * 179.97438 * 3 2 1 5 5 C 1.38625 * 119.10049 * 0.02562 * 4 3 2 6 6 C 1.38577 * 118.39862 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.44591 * 179.97438 * 6 5 4 8 8 N 1.46903 * 109.47083 * 94.99872 * 7 6 5 9 9 C 1.46897 * 110.99909 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.47714 * 325.00745 * 9 8 7 11 11 C 1.53003 * 109.46995 * 85.00189 * 9 8 7 12 12 C 1.50699 * 109.47374 * 205.00101 * 9 8 7 13 13 H 1.07998 * 120.00204 * 0.02562 * 12 9 8 14 14 C 1.37877 * 120.00150 * 180.02562 * 12 9 8 15 15 N 1.31518 * 119.99731 * 0.02562 * 14 12 9 16 16 Si 1.86794 * 119.99978 * 180.02562 * 14 12 9 17 17 H 1.48496 * 109.47186 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47372 * 120.00202 * 16 14 12 19 19 H 1.48507 * 109.47139 * 239.99917 * 16 14 12 20 20 N 1.31788 * 119.12650 * 179.97438 * 2 1 3 21 21 H 1.09005 * 109.47237 * 89.99695 * 1 2 3 22 22 H 1.09005 * 109.47098 * 209.99068 * 1 2 3 23 23 H 1.08995 * 109.47044 * 329.99652 * 1 2 3 24 24 H 1.07999 * 120.45212 * 180.02562 * 4 3 2 25 25 H 1.08000 * 120.79754 * 179.72603 * 5 4 3 26 26 H 1.08999 * 109.47149 * 214.99971 * 7 6 5 27 27 H 1.08997 * 109.46997 * 335.00029 * 7 6 5 28 28 H 1.00897 * 110.99408 * 56.04730 * 8 7 6 29 29 H 1.08997 * 109.47040 * 180.02562 * 11 9 8 30 30 H 1.08996 * 109.47234 * 299.99875 * 11 9 8 31 31 H 1.09002 * 109.47132 * 60.00041 * 11 9 8 32 32 H 0.97002 * 119.99567 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4710 1.1906 0.0005 5 6 4.1808 -0.0001 0.0005 6 6 3.4712 -1.1904 0.0005 7 6 4.1961 -2.5116 -0.0001 8 7 4.3264 -2.9992 1.3795 9 6 5.0292 -4.2886 1.4179 10 1 4.7629 -4.8741 0.5379 11 6 6.5398 -4.0458 1.4308 12 6 4.6309 -5.0411 2.6613 13 1 3.9257 -4.6054 3.3536 14 6 5.1666 -6.2859 2.9152 15 7 6.0257 -6.8164 2.0724 16 14 4.6722 -7.2189 4.4560 17 1 3.6987 -6.4106 5.2332 18 1 4.0483 -8.5111 4.0736 19 1 5.8763 -7.4772 5.2861 20 7 2.1484 -1.1512 0.0005 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3633 -0.8901 0.5137 23 1 -0.3633 0.8899 0.5139 24 1 3.9906 2.1375 0.0009 25 1 5.2608 -0.0001 -0.0035 26 1 3.6326 -3.2349 -0.5895 27 1 5.1872 -2.3820 -0.4347 28 1 3.4241 -3.0662 1.8260 29 1 7.0613 -5.0025 1.4588 30 1 6.8280 -3.5016 0.5314 31 1 6.8063 -3.4604 2.3108 32 1 6.4023 -7.6923 2.2508 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038037931.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:14 Heat of formation + Delta-G solvation = 19.817960 kcal Electronic energy + Delta-G solvation = -14432.796886 eV Core-core repulsion = 12006.314237 eV Total energy + Delta-G solvation = -2426.482649 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.01387 -37.97146 -35.43630 -34.37828 -33.78049 -30.71842 -29.37109 -27.57129 -26.77508 -24.19944 -22.92241 -21.76734 -18.72123 -18.60077 -17.19860 -16.84901 -16.30301 -16.11599 -15.85376 -15.34372 -14.80052 -14.33239 -14.02013 -13.56422 -13.47284 -13.27133 -13.04875 -12.79143 -12.71485 -12.28437 -12.20775 -12.06576 -11.82066 -11.60876 -10.92939 -10.60547 -10.33683 -10.21597 -9.20089 -8.15857 -6.29838 -0.05802 0.10437 1.40441 1.42224 1.54033 2.39952 2.71847 2.96407 3.13100 3.16476 3.54699 3.75965 4.06610 4.18947 4.38257 4.55260 4.62472 4.63612 4.71689 4.81536 5.01397 5.06805 5.07742 5.18073 5.43901 5.51570 5.63136 5.82468 6.07478 6.20253 6.35255 6.64508 6.89826 7.14125 7.40254 8.89982 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041732 B = 0.005948 C = 0.005464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.788612 B = 4706.349157 C = 5122.914931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.297 3.703 3 N -0.538 5.538 4 C 0.151 3.849 5 C -0.215 4.215 6 C 0.173 3.827 7 C 0.109 3.891 8 N -0.675 5.675 9 C 0.215 3.785 10 H -0.026 1.026 11 C -0.113 4.113 12 C -0.540 4.540 13 H 0.055 0.945 14 C 0.016 3.984 15 N -0.915 5.915 16 Si 0.963 3.037 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.277 1.277 20 N -0.544 5.544 21 H 0.098 0.902 22 H 0.084 0.916 23 H 0.098 0.902 24 H 0.208 0.792 25 H 0.169 0.831 26 H 0.030 0.970 27 H 0.097 0.903 28 H 0.330 0.670 29 H 0.058 0.942 30 H 0.030 0.970 31 H 0.029 0.971 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.279 13.549 -4.694 15.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.030 3.970 3 N -0.254 5.254 4 C -0.014 4.014 5 C -0.237 4.237 6 C 0.028 3.972 7 C -0.021 4.021 8 N -0.306 5.306 9 C 0.107 3.893 10 H -0.008 1.008 11 C -0.172 4.172 12 C -0.578 4.578 13 H 0.073 0.927 14 C -0.184 4.184 15 N -0.554 5.554 16 Si 0.788 3.212 17 H -0.194 1.194 18 H -0.205 1.205 19 H -0.203 1.203 20 N -0.261 5.261 21 H 0.116 0.884 22 H 0.102 0.898 23 H 0.116 0.884 24 H 0.225 0.775 25 H 0.187 0.813 26 H 0.048 0.952 27 H 0.115 0.885 28 H 0.147 0.853 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.586 13.738 -4.602 15.527 hybrid contribution 0.256 -1.477 0.316 1.532 sum -5.330 12.260 -4.286 14.039 Atomic orbital electron populations 1.20637 0.83823 1.04677 1.04744 1.23857 0.99568 0.83178 0.90373 1.68313 1.11190 1.30165 1.15694 1.23872 0.89220 0.99778 0.88563 1.22993 1.04225 0.93299 1.03215 1.21741 0.89453 0.96465 0.89575 1.20852 0.98849 0.90460 0.91912 1.60774 1.24477 1.31184 1.14134 1.18985 0.92100 0.83821 0.94383 1.00849 1.21543 0.97591 1.00255 0.97769 1.21564 1.26223 1.02326 1.07692 0.92718 1.25694 0.94825 0.98126 0.99740 1.70016 1.30483 1.17379 1.37548 0.85439 0.78174 0.78231 0.79359 1.19429 1.20516 1.20282 1.68089 1.10456 1.31779 1.15748 0.88386 0.89759 0.88368 0.77512 0.81328 0.95165 0.88478 0.85301 0.92318 0.95145 0.95148 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.66 10.32 71.23 0.74 -0.93 16 2 C 0.30 8.53 7.64 138.75 1.06 9.59 16 3 N -0.54 -14.36 10.33 -187.84 -1.94 -16.30 16 4 C 0.15 3.39 11.31 84.71 0.96 4.35 16 5 C -0.22 -5.51 9.84 22.44 0.22 -5.29 16 6 C 0.17 5.65 6.34 42.56 0.27 5.92 16 7 C 0.11 3.99 5.84 85.56 0.50 4.49 16 8 N -0.67 -29.39 6.29 -499.47 -3.14 -32.53 16 9 C 0.22 11.02 2.60 44.17 0.11 11.13 16 10 H -0.03 -1.47 7.80 -2.39 -0.02 -1.49 16 11 C -0.11 -5.52 9.19 71.98 0.66 -4.86 16 12 C -0.54 -30.06 8.59 25.60 0.22 -29.84 16 13 H 0.05 3.04 7.62 -2.91 -0.02 3.01 16 14 C 0.02 0.87 5.30 84.65 0.45 1.32 16 15 N -0.92 -52.44 11.32 21.45 0.24 -52.20 16 16 Si 0.96 43.71 29.54 68.60 2.03 45.74 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 20 N -0.54 -18.28 10.27 -176.04 -1.81 -20.09 16 21 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 22 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 23 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.21 2.72 8.06 -2.91 -0.02 2.70 16 25 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 26 H 0.03 1.19 8.05 -2.39 -0.02 1.17 16 27 H 0.10 3.25 7.36 -2.39 -0.02 3.23 16 28 H 0.33 14.96 8.21 -89.70 -0.74 14.22 16 29 H 0.06 3.15 6.07 -2.39 -0.01 3.13 16 30 H 0.03 1.28 7.45 -2.39 -0.02 1.26 16 31 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -64.31 275.60 0.94 -63.37 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.38 Total: 16.13 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: 5.19 Total: -4.12 kcal Atomic # 7 Polarization: -114.46 SS G_CDS: -6.65 Total: -121.11 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -64.31 0.94 -63.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038037931.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.187 kcal (2) G-P(sol) polarization free energy of solvation -64.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds